Wall clock time and date at job start Sun Mar 29 2020 22:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46942 * 2 1 4 4 C 1.53002 * 109.47211 * 119.99859 * 2 1 3 5 5 C 1.50701 * 109.47171 * 183.54484 * 4 2 1 6 6 H 1.07995 * 120.00120 * 5.07066 * 5 4 2 7 7 C 1.37878 * 119.99728 * 185.06676 * 5 4 2 8 8 N 1.31516 * 119.99648 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00166 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46887 * 90.00161 * 9 7 5 11 11 H 1.48497 * 109.46948 * 209.99854 * 9 7 5 12 12 H 1.48496 * 109.47167 * 329.99894 * 9 7 5 13 13 N 1.46898 * 109.47322 * 239.99806 * 2 1 3 14 14 C 1.46851 * 110.99703 * 72.95207 * 13 2 1 15 15 C 1.53043 * 109.52114 * 174.15895 * 14 13 2 16 16 C 1.53116 * 109.27481 * 59.18396 * 15 14 13 17 17 C 1.53115 * 109.16277 * 302.34220 * 16 15 14 18 18 C 1.53003 * 109.50576 * 177.59811 * 17 16 15 19 19 C 1.47200 * 109.50176 * 297.71779 * 17 16 15 20 20 N 4.79861 * 129.28058 * 213.54268 * 2 1 3 21 21 C 1.46847 * 111.00291 * 308.74537 * 13 2 1 22 22 H 1.08996 * 109.47329 * 299.99966 * 1 2 3 23 23 H 1.09003 * 109.47160 * 60.00044 * 1 2 3 24 24 H 1.09004 * 109.46942 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47051 * 303.55175 * 4 2 1 26 26 H 1.09000 * 109.47042 * 63.54808 * 4 2 1 27 27 H 0.96998 * 119.99504 * 180.02562 * 8 7 5 28 28 H 1.08991 * 109.46417 * 294.17883 * 14 13 2 29 29 H 1.09003 * 109.46231 * 54.14939 * 14 13 2 30 30 H 1.08993 * 109.50272 * 299.24011 * 15 14 13 31 31 H 1.08998 * 109.50271 * 179.12158 * 15 14 13 32 32 H 1.08999 * 109.51904 * 182.43800 * 16 15 14 33 33 H 1.08996 * 109.57626 * 62.28121 * 16 15 14 34 34 H 1.08998 * 109.47031 * 300.19523 * 18 17 16 35 35 H 1.08995 * 109.46723 * 60.19652 * 18 17 16 36 36 H 1.08999 * 109.46778 * 180.19895 * 18 17 16 37 37 H 1.08994 * 109.46139 * 305.85776 * 21 13 2 38 38 H 1.09004 * 109.46004 * 65.82038 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5445 -0.6456 1.2940 6 1 4.0782 -0.0656 0.5557 7 6 4.2395 -1.3169 2.2775 8 7 5.5524 -1.2504 2.3168 9 14 3.3164 -2.3206 3.5542 10 1 3.1536 -3.7134 3.0656 11 1 4.0827 -2.3286 4.8261 12 1 1.9793 -1.7177 3.7856 13 7 2.0197 -0.6925 -1.1994 14 6 1.8162 0.1275 -2.4005 15 6 2.4663 -0.5584 -3.6042 16 6 1.8402 -1.9424 -3.7964 17 6 2.0234 -2.7593 -2.5143 18 6 1.3481 -4.1226 -2.6764 19 6 3.4596 -2.9492 -2.2537 20 7 4.5681 -3.0959 -2.0524 21 6 1.3862 -2.0096 -1.3422 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6256 -0.2454 2.1381 26 1 1.7295 -1.7656 1.2181 27 1 6.0414 -1.7230 3.0085 28 1 0.7481 0.2457 -2.5829 29 1 2.2698 1.1076 -2.2522 30 1 3.5367 -0.6643 -3.4283 31 1 2.3017 0.0428 -4.4984 32 1 2.3304 -2.4518 -4.6260 33 1 0.7771 -1.8356 -4.0114 34 1 0.2851 -3.9807 -2.8711 35 1 1.8024 -4.6560 -3.5113 36 1 1.4759 -4.7022 -1.7622 37 1 1.5274 -2.5818 -0.4253 38 1 0.3201 -1.8814 -1.5296 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591026519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:34 Heat of formation + Delta-G solvation = -4.695188 kcal Electronic energy + Delta-G solvation = -17773.702546 eV Core-core repulsion = 15228.733741 eV Total energy + Delta-G solvation = -2544.968805 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89632 -37.80140 -36.06413 -34.61428 -33.36861 -31.37868 -29.45578 -27.58530 -25.62937 -24.40624 -23.81296 -21.85687 -20.51440 -18.81138 -17.80007 -16.59730 -16.31676 -15.77390 -15.63316 -15.30638 -14.81974 -14.70183 -14.40087 -14.17370 -13.95570 -13.65371 -13.46173 -13.24157 -13.05987 -12.84044 -12.74149 -12.55419 -12.43730 -12.13052 -12.01002 -11.75664 -11.64033 -11.42346 -11.31461 -11.19258 -10.87939 -10.68505 -8.77031 -8.19313 -6.17633 1.30487 1.32901 1.44065 2.04306 2.08650 2.38303 3.00945 3.15514 3.29599 3.81248 3.91437 4.08243 4.17622 4.31995 4.44086 4.49764 4.61115 4.67453 4.72485 4.79999 4.86006 4.94546 5.01010 5.04700 5.09568 5.13277 5.21033 5.22152 5.29687 5.33410 5.42391 5.47056 5.58493 5.74844 6.37241 6.52222 6.58793 6.89603 6.90718 7.42494 8.99105 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.009638 C = 0.008518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.462986 B = 2904.382193 C = 3286.188052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 H 0.055 0.945 4 C -0.003 4.003 5 C -0.481 4.481 6 H 0.022 0.978 7 C -0.010 4.010 8 N -0.963 5.963 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.237 1.237 13 N -0.553 5.553 14 C 0.056 3.944 15 C -0.121 4.121 16 C -0.097 4.097 17 C 0.036 3.964 18 C -0.135 4.135 19 C 0.245 3.755 20 N -0.511 5.511 21 C 0.066 3.934 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.257 0.743 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.024 0.976 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.637 -2.098 -13.107 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 H 0.073 0.927 4 C -0.041 4.041 5 C -0.519 4.519 6 H 0.041 0.959 7 C -0.204 4.204 8 N -0.606 5.606 9 Si 0.768 3.232 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.160 1.160 13 N -0.277 5.277 14 C -0.072 4.072 15 C -0.159 4.159 16 C -0.135 4.135 17 C 0.032 3.968 18 C -0.194 4.194 19 C -0.072 4.072 20 N -0.187 5.187 21 C -0.062 4.062 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.307 -2.433 -12.651 20.782 hybrid contribution -0.029 -0.073 1.024 1.027 sum -16.336 -2.506 -11.627 20.208 Atomic orbital electron populations 1.22398 0.95331 1.02756 1.02698 1.21433 0.93104 0.96549 0.89641 0.92686 1.19629 0.93957 0.95931 0.94553 1.21242 0.92162 1.28152 1.10356 0.95940 1.26038 0.95441 0.98429 1.00533 1.70126 1.08456 1.46047 1.35929 0.85764 0.80076 0.79229 0.78167 1.20188 1.21666 1.15962 1.61769 1.59800 1.03467 1.02683 1.22121 0.99690 0.95897 0.89444 1.21663 0.98617 0.97484 0.98152 1.21729 1.04335 0.93671 0.93784 1.18866 0.80192 0.99463 0.98285 1.21881 1.02752 0.91861 1.02867 1.29736 0.95513 0.90636 0.91315 1.81191 1.15690 1.11691 1.10113 1.22203 0.97420 0.90021 0.96589 0.92111 0.90883 0.91391 0.96152 0.96394 0.93435 0.91715 0.92814 0.95686 0.88313 0.89975 0.85988 0.86795 0.90595 0.92878 0.92502 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 8.40 71.98 0.60 -3.76 16 2 C 0.10 3.68 2.26 44.92 0.10 3.79 16 3 H 0.05 2.19 7.93 -2.38 -0.02 2.17 16 4 C 0.00 -0.15 3.47 29.85 0.10 -0.04 16 5 C -0.48 -28.93 9.35 25.60 0.24 -28.70 16 6 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 7 C -0.01 -0.65 5.47 84.65 0.46 -0.19 16 8 N -0.96 -65.90 13.96 21.45 0.30 -65.60 16 9 Si 0.94 47.03 27.37 68.60 1.88 48.90 16 10 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.24 -10.50 6.69 99.48 0.67 -9.83 16 13 N -0.55 -19.16 3.85 -871.11 -3.36 -22.51 16 14 C 0.06 1.47 5.18 86.33 0.45 1.92 16 15 C -0.12 -2.86 5.83 30.65 0.18 -2.68 16 16 C -0.10 -1.72 4.77 30.67 0.15 -1.58 16 17 C 0.04 0.89 0.72 -53.94 -0.04 0.85 16 18 C -0.14 -2.25 8.44 71.98 0.61 -1.64 16 19 C 0.25 9.43 12.34 89.44 1.10 10.53 16 20 N -0.51 -24.70 18.54 20.01 0.37 -24.33 16 21 C 0.07 1.86 3.16 86.32 0.27 2.13 16 22 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 1.47 6.93 -2.39 -0.02 1.45 16 24 H 0.07 1.54 6.45 -2.38 -0.02 1.53 16 25 H 0.02 0.92 7.55 -2.39 -0.02 0.91 16 26 H 0.02 0.81 5.54 -2.39 -0.01 0.80 16 27 H 0.26 16.61 8.31 -92.71 -0.77 15.84 16 28 H 0.06 1.25 6.98 -2.39 -0.02 1.24 16 29 H 0.05 1.58 7.98 -2.39 -0.02 1.56 16 30 H 0.02 0.81 7.36 -2.39 -0.02 0.79 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.94 6.28 -2.39 -0.02 1.93 16 38 H 0.09 1.74 6.57 -2.39 -0.02 1.72 16 Total: -1.00 -83.42 296.87 4.40 -79.01 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 0.98 Total: 3.89 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 4.23 Total: -19.36 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -2.69 Total: -112.44 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.88 Total: 48.90 kcal Total: -83.42 4.40 -79.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591026519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.317 kcal (2) G-P(sol) polarization free energy of solvation -83.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds