Wall clock time and date at job start Sun Mar 29 2020 21:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 N 1.46903 * 109.47059 * 119.99550 * 2 1 3 5 5 C 1.46900 * 111.00425 * 275.00591 * 4 2 1 6 6 C 1.52994 * 109.47557 * 180.02562 * 5 4 2 7 7 H 1.09008 * 109.46970 * 304.99717 * 6 5 4 8 8 C 1.47205 * 109.47251 * 64.99350 * 6 5 4 9 9 N 4.90938 * 135.91156 * 112.22432 * 2 1 3 10 10 C 1.52997 * 109.47404 * 184.99766 * 6 5 4 11 11 C 1.50701 * 109.47212 * 174.99684 * 10 6 5 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 6 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 6 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.53000 * 109.47349 * 239.99786 * 2 1 3 20 20 C 1.53778 * 113.61268 * 157.49742 * 19 2 1 21 21 C 1.53784 * 87.08199 * 220.01882 * 20 19 2 22 22 C 1.53776 * 113.61473 * 59.99981 * 19 2 1 23 23 H 1.08998 * 109.46949 * 60.00508 * 1 2 3 24 24 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47414 * 299.99763 * 1 2 3 26 26 H 1.00905 * 111.00016 * 38.95675 * 4 2 1 27 27 H 1.09001 * 109.46898 * 59.99249 * 5 4 2 28 28 H 1.09009 * 109.46674 * 299.99940 * 5 4 2 29 29 H 1.09002 * 109.47153 * 54.99686 * 10 6 5 30 30 H 1.09001 * 109.46832 * 294.99876 * 10 6 5 31 31 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 32 32 H 1.08997 * 112.84830 * 288.80213 * 19 2 1 33 33 H 1.08997 * 113.61752 * 334.57179 * 20 19 2 34 34 H 1.09004 * 113.61269 * 105.47030 * 20 19 2 35 35 H 1.08996 * 113.61008 * 270.88482 * 21 20 19 36 36 H 1.08994 * 113.69163 * 139.99461 * 21 20 19 37 37 H 1.08999 * 113.61674 * 254.52948 * 22 19 2 38 38 H 1.09000 * 113.61340 * 25.34873 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2226 2.3470 6 6 2.5961 -0.5327 3.5743 7 1 1.9708 -1.4081 3.7502 8 6 3.9851 -0.9607 3.3411 9 7 5.0562 -1.2920 3.1620 10 6 2.5438 0.3854 4.7971 11 6 2.9327 -0.3935 6.0271 12 1 3.1917 -1.4388 5.9449 13 6 2.9588 0.2285 7.2573 14 7 2.6439 1.5014 7.3574 15 14 3.4416 -0.7369 8.7819 16 1 4.8199 -1.2650 8.6176 17 1 3.3907 0.1542 9.9688 18 1 2.4976 -1.8675 8.9715 19 6 2.0400 -0.7213 -1.2492 20 6 3.4727 -0.3277 -1.6459 21 6 2.9923 -0.3573 -3.1065 22 6 1.5812 -0.0724 -2.5657 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 1.4495 -1.4979 1.4102 27 1 1.0869 0.6164 2.5525 28 1 2.7588 1.0463 2.1183 29 1 1.5321 0.7731 4.9173 30 1 3.2368 1.2152 4.6582 31 1 2.6619 1.9389 8.2229 32 1 1.8759 -1.7982 -1.2128 33 1 3.7639 0.6648 -1.3021 34 1 4.2152 -1.0915 -1.4149 35 1 3.0899 -1.3350 -3.5784 36 1 3.3971 0.4497 -3.7172 37 1 0.7967 -0.6301 -3.0772 38 1 1.3539 0.9896 -2.4730 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591757412.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:54 Heat of formation + Delta-G solvation = 20.223628 kcal Electronic energy + Delta-G solvation = -16363.721431 eV Core-core repulsion = 13819.833187 eV Total energy + Delta-G solvation = -2543.888244 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.33107 -37.13317 -35.24434 -33.58651 -31.97569 -29.45475 -26.48643 -25.63060 -25.26690 -22.83135 -21.77978 -20.98054 -19.43378 -16.95879 -16.38840 -15.70957 -15.31000 -14.79291 -14.47042 -14.27246 -13.70508 -13.08994 -12.91323 -12.74522 -12.49788 -12.29797 -12.14307 -11.91985 -11.70351 -11.53240 -11.24499 -11.07849 -11.02227 -10.69503 -10.59508 -10.49803 -10.24675 -10.19386 -10.18542 -9.49360 -9.21114 -8.44683 -8.17987 -6.08718 -4.11863 3.31774 3.35972 3.39852 3.78151 3.87949 4.18111 4.42396 4.57274 4.67499 4.79551 4.90684 4.98029 5.18871 5.27267 5.29391 5.36555 5.61416 5.62527 5.63897 5.71099 5.73189 5.79436 5.86923 5.94806 6.03582 6.09110 6.17571 6.25213 6.42806 6.48599 6.55227 7.20782 7.43377 7.53585 7.58397 7.86488 8.24344 8.62587 8.92773 9.53521 11.02182 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.044572 B = 0.004584 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.041540 B = 6106.515930 C = 6459.798789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.093 3.907 3 H 0.076 0.924 4 N -0.687 5.687 5 C 0.067 3.933 6 C 0.009 3.991 7 H 0.098 0.902 8 C 0.256 3.744 9 N -0.480 5.480 10 C 0.032 3.968 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.094 4.094 20 C -0.126 4.126 21 C -0.147 4.147 22 C -0.136 4.136 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.340 0.660 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.026 0.974 31 H 0.263 0.737 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.286 -1.698 -17.119 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.017 4.017 3 H 0.095 0.905 4 N -0.317 5.317 5 C -0.063 4.063 6 C -0.013 4.013 7 H 0.116 0.884 8 C -0.061 4.061 9 N -0.157 5.157 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.112 4.112 20 C -0.164 4.164 21 C -0.184 4.184 22 C -0.174 4.174 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.158 0.842 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.014 -1.968 -17.413 17.977 hybrid contribution -1.119 -0.234 1.289 1.723 sum -5.133 -2.202 -16.124 17.064 Atomic orbital electron populations 1.22484 0.97421 1.02036 1.02119 1.21562 0.92256 0.97749 0.90119 0.90545 1.60591 1.57387 1.09883 1.03852 1.22081 1.00137 0.95234 0.88854 1.19211 0.84487 1.00741 0.96838 0.88416 1.28828 0.94736 0.92023 0.90492 1.80950 1.12893 1.10377 1.11466 1.19159 0.98733 0.93898 0.88892 1.21116 1.46701 0.96676 0.91997 0.92559 1.24949 0.95019 0.94865 0.99102 1.69929 1.48273 1.09929 1.24957 0.86655 0.79305 0.79872 0.82251 1.20205 1.21196 1.20067 1.22469 0.96266 0.99857 0.92654 1.22815 0.96824 1.01870 0.94853 1.22844 0.97010 1.01466 0.97092 1.22931 0.96731 1.00889 0.96837 0.92254 0.92549 0.92448 0.84187 0.93394 0.90693 0.94512 0.95603 0.92755 0.89439 0.90407 0.91608 0.90579 0.91876 0.91909 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 8.96 37.16 0.33 -1.38 16 2 C 0.09 1.01 2.41 -67.71 -0.16 0.85 16 3 H 0.08 0.88 7.60 -51.93 -0.39 0.49 16 4 N -0.69 -8.87 5.95 -106.72 -0.63 -9.50 16 5 C 0.07 0.99 4.85 -3.83 -0.02 0.97 16 6 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 7 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 8 C 0.26 5.42 13.67 -20.78 -0.28 5.13 16 9 N -0.48 -11.07 18.53 42.13 0.78 -10.29 16 10 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 11 C -0.53 -14.10 8.60 -34.44 -0.30 -14.40 16 12 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 15 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.09 -0.96 3.45 -89.81 -0.31 -1.27 16 20 C -0.13 -1.39 7.63 -25.92 -0.20 -1.59 16 21 C -0.15 -1.33 8.08 -25.92 -0.21 -1.54 16 22 C -0.14 -1.18 6.68 -25.92 -0.17 -1.35 16 23 H 0.06 0.50 7.45 -51.93 -0.39 0.12 16 24 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 25 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 26 H 0.34 4.03 8.47 -39.29 -0.33 3.69 16 27 H 0.05 0.65 7.44 -51.93 -0.39 0.27 16 28 H 0.07 1.17 8.05 -51.92 -0.42 0.75 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.90 7.96 -51.93 -0.41 0.48 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -29.57 316.88 -7.60 -37.17 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.48 Total: -1.25 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.76 Total: -12.36 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.88 Total: -44.70 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.57 -7.60 -37.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757412.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.390 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds