Wall clock time and date at job start Sun Mar 29 2020 21:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 N 1.46903 * 109.47059 * 119.99550 * 2 1 3 5 5 C 1.46900 * 111.00425 * 275.00591 * 4 2 1 6 6 C 1.52994 * 109.47557 * 180.02562 * 5 4 2 7 7 H 1.09008 * 109.46970 * 304.99717 * 6 5 4 8 8 C 1.47205 * 109.47251 * 64.99350 * 6 5 4 9 9 N 4.90938 * 135.91156 * 112.22432 * 2 1 3 10 10 C 1.52997 * 109.47404 * 184.99766 * 6 5 4 11 11 C 1.50701 * 109.47212 * 174.99684 * 10 6 5 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 6 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 6 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.53000 * 109.47349 * 239.99786 * 2 1 3 20 20 C 1.53778 * 113.61268 * 157.49742 * 19 2 1 21 21 C 1.53784 * 87.08199 * 220.01882 * 20 19 2 22 22 C 1.53776 * 113.61473 * 59.99981 * 19 2 1 23 23 H 1.08998 * 109.46949 * 60.00508 * 1 2 3 24 24 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47414 * 299.99763 * 1 2 3 26 26 H 1.00905 * 111.00016 * 38.95675 * 4 2 1 27 27 H 1.09001 * 109.46898 * 59.99249 * 5 4 2 28 28 H 1.09009 * 109.46674 * 299.99940 * 5 4 2 29 29 H 1.09002 * 109.47153 * 54.99686 * 10 6 5 30 30 H 1.09001 * 109.46832 * 294.99876 * 10 6 5 31 31 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 32 32 H 1.08997 * 112.84830 * 288.80213 * 19 2 1 33 33 H 1.08997 * 113.61752 * 334.57179 * 20 19 2 34 34 H 1.09004 * 113.61269 * 105.47030 * 20 19 2 35 35 H 1.08996 * 113.61008 * 270.88482 * 21 20 19 36 36 H 1.08994 * 113.69163 * 139.99461 * 21 20 19 37 37 H 1.08999 * 113.61674 * 254.52948 * 22 19 2 38 38 H 1.09000 * 113.61340 * 25.34873 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2226 2.3470 6 6 2.5961 -0.5327 3.5743 7 1 1.9708 -1.4081 3.7502 8 6 3.9851 -0.9607 3.3411 9 7 5.0562 -1.2920 3.1620 10 6 2.5438 0.3854 4.7971 11 6 2.9327 -0.3935 6.0271 12 1 3.1917 -1.4388 5.9449 13 6 2.9588 0.2285 7.2573 14 7 2.6439 1.5014 7.3574 15 14 3.4416 -0.7369 8.7819 16 1 4.8199 -1.2650 8.6176 17 1 3.3907 0.1542 9.9688 18 1 2.4976 -1.8675 8.9715 19 6 2.0400 -0.7213 -1.2492 20 6 3.4727 -0.3277 -1.6459 21 6 2.9923 -0.3573 -3.1065 22 6 1.5812 -0.0724 -2.5657 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 1.4495 -1.4979 1.4102 27 1 1.0869 0.6164 2.5525 28 1 2.7588 1.0463 2.1183 29 1 1.5321 0.7731 4.9173 30 1 3.2368 1.2152 4.6582 31 1 2.6619 1.9389 8.2229 32 1 1.8759 -1.7982 -1.2128 33 1 3.7639 0.6648 -1.3021 34 1 4.2152 -1.0915 -1.4149 35 1 3.0899 -1.3350 -3.5784 36 1 3.3971 0.4497 -3.7172 37 1 0.7967 -0.6301 -3.0772 38 1 1.3539 0.9896 -2.4730 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757412.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:54 Heat of formation + Delta-G solvation = 3.274851 kcal Electronic energy + Delta-G solvation = -16364.456385 eV Core-core repulsion = 13819.833187 eV Total energy + Delta-G solvation = -2544.623198 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.17842 -38.55555 -36.57826 -35.42256 -33.63758 -30.71267 -27.96206 -26.66845 -26.03398 -24.32180 -23.47298 -21.89444 -20.24918 -18.57901 -18.27868 -16.74397 -16.43472 -16.31552 -15.60863 -15.40497 -15.08893 -14.55857 -14.26304 -13.90860 -13.70661 -13.67397 -13.30657 -13.22560 -13.04932 -12.91179 -12.68848 -12.49600 -12.45205 -12.33814 -11.93061 -11.83696 -11.48661 -11.32895 -11.22040 -11.00194 -10.83071 -10.54868 -9.18478 -8.19228 -6.27631 1.41182 1.43041 1.50046 2.08792 2.15755 2.41846 3.15740 3.19256 3.37355 3.78265 3.90646 3.99392 4.11093 4.25129 4.35080 4.46536 4.49344 4.59928 4.74885 4.81442 4.89680 4.93144 4.94393 5.01153 5.09777 5.15365 5.18113 5.20937 5.39048 5.46635 5.47838 5.62379 5.70947 5.79426 6.13360 6.25037 6.61958 6.83535 6.94704 7.40985 8.91554 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.044572 B = 0.004584 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.041540 B = 6106.515930 C = 6459.798789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 H 0.068 0.932 4 N -0.695 5.695 5 C 0.081 3.919 6 C 0.020 3.980 7 H 0.120 0.880 8 C 0.266 3.734 9 N -0.516 5.516 10 C 0.038 3.962 11 C -0.540 4.540 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.924 5.924 15 Si 0.948 3.052 16 H -0.282 1.282 17 H -0.282 1.282 18 H -0.262 1.262 19 C -0.093 4.093 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.125 4.125 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.348 0.652 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.035 0.965 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 -2.408 -17.982 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.015 4.015 3 H 0.086 0.914 4 N -0.327 5.327 5 C -0.050 4.050 6 C -0.002 4.002 7 H 0.137 0.863 8 C -0.050 4.050 9 N -0.194 5.194 10 C -0.001 4.001 11 C -0.579 4.579 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.774 3.226 16 H -0.207 1.207 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.112 4.112 20 C -0.175 4.175 21 C -0.178 4.178 22 C -0.163 4.163 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.167 0.833 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.017 0.983 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.322 -2.690 -18.289 19.236 hybrid contribution -0.688 -0.008 1.532 1.680 sum -6.010 -2.698 -16.757 18.005 Atomic orbital electron populations 1.22407 0.95821 1.02632 1.02526 1.21581 0.93463 0.97144 0.89322 0.91357 1.60528 1.58409 1.10032 1.03715 1.21849 1.00453 0.94629 0.88032 1.19188 0.83507 1.00858 0.96623 0.86266 1.29356 0.95106 0.91053 0.89464 1.80948 1.13982 1.11718 1.12723 1.18985 0.97609 0.93565 0.89929 1.21538 1.46037 0.96889 0.93388 0.92761 1.25714 0.95247 0.95732 1.02030 1.70026 1.49508 1.11220 1.25619 0.85752 0.78740 0.78991 0.79117 1.20742 1.20708 1.18660 1.22467 0.95672 0.99866 0.93186 1.22849 0.97002 1.00739 0.96874 1.22833 0.97100 1.02120 0.95783 1.22882 0.96776 1.01208 0.95457 0.91015 0.91837 0.92883 0.83262 0.91697 0.91753 0.94637 0.98305 0.92707 0.89536 0.91376 0.93459 0.89949 0.91225 0.90540 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 8.96 71.98 0.65 -2.19 16 2 C 0.09 1.90 2.41 44.91 0.11 2.00 16 3 H 0.07 1.50 7.60 -2.39 -0.02 1.48 16 4 N -0.70 -16.90 5.95 -491.57 -2.92 -19.83 16 5 C 0.08 2.28 4.85 86.30 0.42 2.70 16 6 C 0.02 0.72 2.35 -12.60 -0.03 0.69 16 7 H 0.12 3.82 8.14 -2.38 -0.02 3.80 16 8 C 0.27 11.18 13.67 89.45 1.22 12.40 16 9 N -0.52 -23.83 18.53 20.00 0.37 -23.46 16 10 C 0.04 1.76 4.42 29.85 0.13 1.89 16 11 C -0.54 -28.78 8.60 25.60 0.22 -28.56 16 12 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 13 C 0.01 0.65 5.46 84.66 0.46 1.11 16 14 N -0.92 -53.30 13.29 21.45 0.28 -53.02 16 15 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 19 C -0.09 -1.75 3.45 -10.27 -0.04 -1.79 16 20 C -0.14 -2.94 7.63 31.12 0.24 -2.70 16 21 C -0.14 -2.31 8.08 31.12 0.25 -2.06 16 22 C -0.13 -1.87 6.68 31.12 0.21 -1.66 16 23 H 0.07 1.00 7.45 -2.39 -0.02 0.98 16 24 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 25 H 0.05 0.92 7.45 -2.39 -0.02 0.90 16 26 H 0.35 7.49 8.47 -89.69 -0.76 6.73 16 27 H 0.07 1.64 7.44 -2.39 -0.02 1.62 16 28 H 0.06 1.97 8.05 -2.38 -0.02 1.95 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 30 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.57 7.96 -2.39 -0.02 1.55 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 Total: -1.00 -62.53 316.88 3.86 -58.67 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.26 Total: 10.23 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 3.84 Total: -18.18 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -2.27 Total: -96.30 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -62.53 3.86 -58.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757412.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.943 kcal (2) G-P(sol) polarization free energy of solvation -62.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds