Wall clock time and date at job start Sun Mar 29 2020 21:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 5 5 C 1.46903 * 110.99908 * 274.99684 * 4 2 1 6 6 C 1.52996 * 109.47400 * 179.97438 * 5 4 2 7 7 H 1.09007 * 109.47030 * 55.00080 * 6 5 4 8 8 C 1.47197 * 109.47369 * 295.00068 * 6 5 4 9 9 N 4.90937 * 82.27688 * 119.13410 * 2 1 3 10 10 C 1.53001 * 109.47324 * 174.99825 * 6 5 4 11 11 C 1.50698 * 109.46943 * 184.99895 * 10 6 5 12 12 H 1.07996 * 120.00558 * 0.02562 * 11 10 6 13 13 C 1.37884 * 119.99826 * 179.97438 * 11 10 6 14 14 N 1.31515 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00009 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47239 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46844 * 120.00746 * 15 13 11 18 18 H 1.48500 * 109.47145 * 240.00397 * 15 13 11 19 19 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 20 20 C 1.53779 * 113.61807 * 157.49918 * 19 2 1 21 21 C 1.53775 * 87.08445 * 220.02120 * 20 19 2 22 22 C 1.53780 * 87.08291 * 25.43110 * 21 20 19 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.00895 * 111.00219 * 151.04779 * 4 2 1 27 27 H 1.09003 * 109.46856 * 300.00136 * 5 4 2 28 28 H 1.09001 * 109.47072 * 60.00127 * 5 4 2 29 29 H 1.08997 * 109.46935 * 304.99818 * 10 6 5 30 30 H 1.08996 * 109.47017 * 64.99978 * 10 6 5 31 31 H 0.96998 * 119.99902 * 179.97438 * 14 13 11 32 32 H 1.09006 * 112.85292 * 288.81039 * 19 2 1 33 33 H 1.09003 * 113.61460 * 334.56934 * 20 19 2 34 34 H 1.08997 * 113.61480 * 105.47119 * 20 19 2 35 35 H 1.09008 * 113.61327 * 270.88310 * 21 20 19 36 36 H 1.08999 * 113.69441 * 139.99189 * 21 20 19 37 37 H 1.08996 * 113.61725 * 220.02384 * 22 21 20 38 38 H 1.08991 * 113.69226 * 89.12796 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5744 7 1 3.5507 -1.0021 3.3396 8 6 1.6208 -1.5688 3.9552 9 7 0.8703 -2.3685 4.2493 10 6 2.7790 0.4457 4.7359 11 6 3.3988 -0.2740 5.9059 12 1 3.6380 -1.3243 5.8288 13 6 3.6615 0.4088 7.0747 14 7 3.3707 1.6879 7.1685 15 14 4.4291 -0.4834 8.5252 16 1 4.6572 -1.9063 8.1668 17 1 5.7255 0.1541 8.8687 18 1 3.5152 -0.4072 9.6932 19 6 2.0400 -0.7213 -1.2492 20 6 3.4726 -0.3278 -1.6461 21 6 2.9922 -0.3574 -3.1066 22 6 1.5811 -0.0723 -2.5658 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 2.9172 -1.1205 1.0287 27 1 2.7589 1.0461 2.1181 28 1 1.0871 0.6163 2.5525 29 1 3.4315 1.2611 4.4239 30 1 1.8094 0.8480 5.0290 31 1 3.5552 2.1682 7.9908 32 1 1.8757 -1.7983 -1.2129 33 1 3.7640 0.6647 -1.3023 34 1 4.2151 -1.0917 -1.4152 35 1 3.0896 -1.3351 -3.5786 36 1 3.3970 0.4496 -3.7173 37 1 0.7966 -0.6299 -3.0772 38 1 1.3539 0.9896 -2.4731 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591757413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:56 Heat of formation + Delta-G solvation = 20.238194 kcal Electronic energy + Delta-G solvation = -16347.539291 eV Core-core repulsion = 13803.651679 eV Total energy + Delta-G solvation = -2543.887613 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.47359 -37.09543 -35.13874 -33.56932 -31.96017 -29.59328 -26.70103 -25.59297 -25.34962 -22.81605 -21.75546 -20.74392 -19.50725 -17.12772 -16.42103 -15.84012 -15.36441 -14.89971 -14.53682 -14.15040 -13.73406 -13.09654 -12.90379 -12.64052 -12.51657 -12.27101 -12.07076 -11.86774 -11.81729 -11.68147 -11.24463 -11.11122 -11.00035 -10.67046 -10.59314 -10.56814 -10.33230 -10.21508 -10.16064 -9.49764 -9.18942 -8.45557 -8.23124 -6.09050 -4.11991 3.28910 3.37175 3.42001 3.77902 3.87559 4.16757 4.42140 4.45624 4.54151 4.65983 4.76055 4.95309 5.15507 5.29204 5.29864 5.47909 5.56380 5.57659 5.67098 5.68949 5.72783 5.78255 5.82085 5.86918 5.99411 6.06446 6.13792 6.30189 6.40911 6.45050 6.53553 7.21953 7.43674 7.53707 7.59041 7.86671 8.24263 8.62285 8.93192 9.53518 11.01950 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038937 B = 0.004546 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.942468 B = 6158.035197 C = 6356.790661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.095 3.905 3 H 0.044 0.956 4 N -0.689 5.689 5 C 0.067 3.933 6 C 0.009 3.991 7 H 0.098 0.902 8 C 0.256 3.744 9 N -0.480 5.480 10 C 0.031 3.969 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.111 4.111 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.132 4.132 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.341 0.659 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 -0.252 -18.888 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.015 4.015 3 H 0.062 0.938 4 N -0.320 5.320 5 C -0.063 4.063 6 C -0.013 4.013 7 H 0.116 0.884 8 C -0.061 4.061 9 N -0.157 5.157 10 C -0.008 4.008 11 C -0.563 4.563 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.130 4.130 20 C -0.179 4.179 21 C -0.180 4.180 22 C -0.170 4.170 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.159 0.841 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.927 -1.560 -18.153 18.321 hybrid contribution 1.499 0.460 0.640 1.694 sum -0.427 -1.100 -17.513 17.553 Atomic orbital electron populations 1.21763 0.94842 1.02184 1.00929 1.21492 0.95800 0.95512 0.88704 0.93799 1.60567 1.33428 1.33761 1.04274 1.22106 1.01537 0.93608 0.89086 1.19212 0.93311 0.92133 0.96616 0.88404 1.28827 0.93237 0.93072 0.90915 1.80951 1.11608 1.11942 1.11213 1.19171 0.98308 0.93148 0.90136 1.21193 1.41106 0.96191 0.97845 0.92438 1.24958 0.95558 0.94821 0.98659 1.69950 1.47769 1.08108 1.27254 0.86538 0.78946 0.80035 0.82587 1.19657 1.20872 1.20960 1.22742 0.95868 1.00660 0.93708 1.23002 0.96684 1.01902 0.96321 1.22792 0.96988 1.01705 0.96530 1.22882 0.96792 1.00994 0.96364 0.92747 0.92906 0.92257 0.84109 0.93427 0.90618 0.94490 0.95582 0.92870 0.88618 0.90154 0.91411 0.90377 0.91688 0.91624 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.22 37.16 0.34 -1.26 16 2 C 0.09 1.06 2.44 -67.72 -0.17 0.89 16 3 H 0.04 0.49 7.60 -51.93 -0.39 0.10 16 4 N -0.69 -9.09 6.01 -106.73 -0.64 -9.73 16 5 C 0.07 1.00 4.85 -3.82 -0.02 0.98 16 6 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 7 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 8 C 0.26 5.45 13.67 -20.78 -0.28 5.17 16 9 N -0.48 -11.11 18.53 42.13 0.78 -10.33 16 10 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 11 C -0.53 -14.08 8.60 -34.44 -0.30 -14.38 16 12 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 15 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C -0.11 -1.05 3.13 -89.81 -0.28 -1.33 16 20 C -0.14 -1.22 7.56 -25.92 -0.20 -1.41 16 21 C -0.14 -1.10 8.08 -25.92 -0.21 -1.31 16 22 C -0.13 -1.08 6.68 -25.92 -0.17 -1.26 16 23 H 0.05 0.68 7.45 -51.93 -0.39 0.29 16 24 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.34 4.12 8.29 -39.29 -0.33 3.80 16 27 H 0.05 0.66 8.06 -51.93 -0.42 0.24 16 28 H 0.08 1.20 7.43 -51.93 -0.39 0.81 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.71 7.96 -51.93 -0.41 0.29 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -29.71 316.65 -7.56 -37.28 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.47 Total: -1.71 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -1.72 Total: -11.74 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.88 Total: -44.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.71 -7.56 -37.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.516 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds