Wall clock time and date at job start Sun Mar 29 2020 21:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 5 5 C 1.46903 * 110.99908 * 274.99684 * 4 2 1 6 6 C 1.52996 * 109.47400 * 179.97438 * 5 4 2 7 7 H 1.09007 * 109.47030 * 55.00080 * 6 5 4 8 8 C 1.47197 * 109.47369 * 295.00068 * 6 5 4 9 9 N 4.90937 * 82.27688 * 119.13410 * 2 1 3 10 10 C 1.53001 * 109.47324 * 174.99825 * 6 5 4 11 11 C 1.50698 * 109.46943 * 184.99895 * 10 6 5 12 12 H 1.07996 * 120.00558 * 0.02562 * 11 10 6 13 13 C 1.37884 * 119.99826 * 179.97438 * 11 10 6 14 14 N 1.31515 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00009 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47239 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46844 * 120.00746 * 15 13 11 18 18 H 1.48500 * 109.47145 * 240.00397 * 15 13 11 19 19 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 20 20 C 1.53779 * 113.61807 * 157.49918 * 19 2 1 21 21 C 1.53775 * 87.08445 * 220.02120 * 20 19 2 22 22 C 1.53780 * 87.08291 * 25.43110 * 21 20 19 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.00895 * 111.00219 * 151.04779 * 4 2 1 27 27 H 1.09003 * 109.46856 * 300.00136 * 5 4 2 28 28 H 1.09001 * 109.47072 * 60.00127 * 5 4 2 29 29 H 1.08997 * 109.46935 * 304.99818 * 10 6 5 30 30 H 1.08996 * 109.47017 * 64.99978 * 10 6 5 31 31 H 0.96998 * 119.99902 * 179.97438 * 14 13 11 32 32 H 1.09006 * 112.85292 * 288.81039 * 19 2 1 33 33 H 1.09003 * 113.61460 * 334.56934 * 20 19 2 34 34 H 1.08997 * 113.61480 * 105.47119 * 20 19 2 35 35 H 1.09008 * 113.61327 * 270.88310 * 21 20 19 36 36 H 1.08999 * 113.69441 * 139.99189 * 21 20 19 37 37 H 1.08996 * 113.61725 * 220.02384 * 22 21 20 38 38 H 1.08991 * 113.69226 * 89.12796 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5744 7 1 3.5507 -1.0021 3.3396 8 6 1.6208 -1.5688 3.9552 9 7 0.8703 -2.3685 4.2493 10 6 2.7790 0.4457 4.7359 11 6 3.3988 -0.2740 5.9059 12 1 3.6380 -1.3243 5.8288 13 6 3.6615 0.4088 7.0747 14 7 3.3707 1.6879 7.1685 15 14 4.4291 -0.4834 8.5252 16 1 4.6572 -1.9063 8.1668 17 1 5.7255 0.1541 8.8687 18 1 3.5152 -0.4072 9.6932 19 6 2.0400 -0.7213 -1.2492 20 6 3.4726 -0.3278 -1.6461 21 6 2.9922 -0.3574 -3.1066 22 6 1.5811 -0.0723 -2.5658 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 2.9172 -1.1205 1.0287 27 1 2.7589 1.0461 2.1181 28 1 1.0871 0.6163 2.5525 29 1 3.4315 1.2611 4.4239 30 1 1.8094 0.8480 5.0290 31 1 3.5552 2.1682 7.9908 32 1 1.8757 -1.7983 -1.2129 33 1 3.7640 0.6647 -1.3023 34 1 4.2151 -1.0917 -1.4152 35 1 3.0896 -1.3351 -3.5786 36 1 3.3970 0.4496 -3.7173 37 1 0.7966 -0.6299 -3.0772 38 1 1.3539 0.9896 -2.4731 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:56 Heat of formation + Delta-G solvation = 3.191936 kcal Electronic energy + Delta-G solvation = -16348.278472 eV Core-core repulsion = 13803.651679 eV Total energy + Delta-G solvation = -2544.626794 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.25493 -38.53647 -36.47721 -35.40304 -33.61373 -30.87175 -28.16615 -26.65312 -26.05405 -24.28475 -23.45423 -21.65718 -20.22347 -18.63915 -18.36768 -16.87949 -16.48888 -16.29761 -15.73161 -15.35974 -15.10281 -14.59235 -14.22006 -13.97159 -13.68547 -13.45887 -13.31838 -13.25150 -13.08096 -12.95216 -12.73818 -12.51963 -12.45423 -12.27710 -12.02296 -11.84807 -11.47231 -11.28503 -11.21591 -10.97120 -10.82092 -10.55923 -9.27705 -8.19774 -6.28026 1.39104 1.42240 1.52769 2.07915 2.14761 2.41584 3.15048 3.18028 3.37011 3.74892 3.82216 3.96515 4.06793 4.20121 4.34313 4.45757 4.48249 4.68256 4.78579 4.81091 4.90214 4.93424 4.94367 4.98335 5.07705 5.13758 5.16344 5.19231 5.41184 5.44617 5.47035 5.61825 5.67946 5.79286 6.12883 6.24420 6.59881 6.83359 6.93931 7.40757 8.91456 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038937 B = 0.004546 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.942468 B = 6158.035197 C = 6356.790661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.049 0.951 4 N -0.696 5.696 5 C 0.079 3.921 6 C 0.020 3.980 7 H 0.120 0.880 8 C 0.266 3.734 9 N -0.515 5.515 10 C 0.037 3.963 11 C -0.538 4.538 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.924 5.924 15 Si 0.949 3.051 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.285 1.285 19 C -0.111 4.111 20 C -0.141 4.141 21 C -0.138 4.138 22 C -0.129 4.129 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.349 0.651 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.035 0.965 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -0.439 -20.125 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.013 4.013 3 H 0.067 0.933 4 N -0.329 5.329 5 C -0.051 4.051 6 C -0.002 4.002 7 H 0.137 0.863 8 C -0.050 4.050 9 N -0.193 5.193 10 C -0.002 4.002 11 C -0.576 4.576 12 H 0.073 0.927 13 C -0.188 4.188 14 N -0.564 5.564 15 Si 0.775 3.225 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.212 1.212 19 C -0.129 4.129 20 C -0.178 4.178 21 C -0.176 4.176 22 C -0.167 4.167 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.168 0.832 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.017 0.983 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.052 -1.755 -19.407 19.514 hybrid contribution 1.205 0.523 1.003 1.653 sum 0.153 -1.232 -18.403 18.445 Atomic orbital electron populations 1.21759 0.95220 1.01443 1.01138 1.21536 0.95434 0.95806 0.88528 0.93343 1.60502 1.34113 1.33714 1.04565 1.21889 1.01150 0.93710 0.88342 1.19183 0.93914 0.90751 0.96319 0.86274 1.29341 0.92854 0.92799 0.89989 1.80948 1.12867 1.13258 1.12221 1.18995 0.96389 0.93803 0.90967 1.21590 1.40731 0.96239 0.99088 0.92749 1.25720 0.96241 0.95527 1.01278 1.70041 1.48991 1.09341 1.28047 0.85631 0.78413 0.79055 0.79403 1.19344 1.19732 1.21162 1.22694 0.96772 1.00109 0.93361 1.23004 0.96046 1.01867 0.96929 1.22783 0.96400 1.02288 0.96095 1.22885 0.97305 1.01115 0.95424 0.94265 0.90989 0.93424 0.83211 0.91736 0.91650 0.94630 0.98253 0.92715 0.89334 0.90190 0.91288 0.89895 0.90942 0.91223 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.22 71.98 0.66 -2.35 16 2 C 0.10 1.99 2.44 44.92 0.11 2.10 16 3 H 0.05 0.98 7.60 -2.39 -0.02 0.97 16 4 N -0.70 -17.31 6.01 -491.57 -2.95 -20.26 16 5 C 0.08 2.28 4.85 86.30 0.42 2.70 16 6 C 0.02 0.73 2.35 -12.60 -0.03 0.70 16 7 H 0.12 3.84 8.14 -2.38 -0.02 3.82 16 8 C 0.27 11.20 13.67 89.45 1.22 12.42 16 9 N -0.52 -23.78 18.53 20.00 0.37 -23.41 16 10 C 0.04 1.73 4.42 29.85 0.13 1.87 16 11 C -0.54 -28.71 8.60 25.60 0.22 -28.49 16 12 H 0.05 2.88 7.59 -2.91 -0.02 2.85 16 13 C 0.01 0.61 5.46 84.66 0.46 1.08 16 14 N -0.92 -53.32 13.29 21.45 0.28 -53.04 16 15 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 19 C -0.11 -1.88 3.13 -10.27 -0.03 -1.91 16 20 C -0.14 -2.12 7.56 31.12 0.24 -1.88 16 21 C -0.14 -1.81 8.08 31.12 0.25 -1.55 16 22 C -0.13 -1.82 6.68 31.12 0.21 -1.62 16 23 H 0.04 0.96 7.45 -2.39 -0.02 0.94 16 24 H 0.07 1.27 7.45 -2.39 -0.02 1.25 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.35 7.73 8.29 -89.70 -0.74 6.99 16 27 H 0.06 1.66 8.06 -2.39 -0.02 1.64 16 28 H 0.06 2.03 7.43 -2.39 -0.02 2.01 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.08 1.22 7.96 -2.39 -0.02 1.20 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 Total: -1.00 -62.43 316.65 3.87 -58.56 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.28 Total: 9.43 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 3.86 Total: -16.93 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -2.30 Total: -96.71 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -62.43 3.87 -58.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.754 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds