Wall clock time and date at job start Sun Mar 29 2020 22:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00398 * 2 1 4 4 H 1.48502 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47062 * 299.99247 * 3 2 1 6 6 H 1.48499 * 109.47300 * 59.99547 * 3 2 1 7 7 C 1.38817 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00472 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99599 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99974 * 180.02562 * 9 7 2 11 11 C 1.50701 * 115.54691 * 325.57827 * 10 9 7 12 12 C 1.38239 * 120.00209 * 92.73196 * 11 10 9 13 13 C 1.38221 * 120.00933 * 179.97438 * 12 11 10 14 14 C 1.38261 * 120.02593 * 359.97438 * 13 12 11 15 15 C 1.38190 * 120.01842 * 359.97438 * 14 13 12 16 16 C 1.38328 * 120.00941 * 272.68684 * 11 10 9 17 17 Cl 1.73602 * 120.01275 * 0.04519 * 16 11 10 18 18 C 1.53000 * 117.50013 * 111.25125 * 10 9 7 19 19 C 1.53002 * 117.49659 * 179.91263 * 10 9 7 20 20 H 0.97003 * 119.99413 * 0.02562 * 1 2 3 21 21 H 0.97006 * 120.00313 * 359.97438 * 9 7 2 22 22 H 1.08000 * 119.99197 * 359.97438 * 12 11 10 23 23 H 1.07995 * 119.98542 * 179.97438 * 13 12 11 24 24 H 1.08001 * 119.99125 * 179.97438 * 14 13 12 25 25 H 1.08000 * 120.01008 * 179.72494 * 15 14 13 26 26 H 1.09000 * 117.49896 * 214.99913 * 18 10 9 27 27 H 1.09002 * 117.49936 * 0.02592 * 18 10 9 28 28 H 1.08993 * 117.50203 * 359.97438 * 19 10 9 29 29 H 1.09003 * 117.49221 * 144.99700 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0578 -3.6569 0.0017 11 6 3.3547 -3.6593 -0.7659 12 6 4.5424 -3.3768 -0.1173 13 6 5.7320 -3.3796 -0.8211 14 6 5.7349 -3.6654 -2.1739 15 6 4.5485 -3.9490 -2.8231 16 6 3.3570 -3.9452 -2.1193 17 17 1.8659 -4.3001 -2.9345 18 6 1.9840 -4.5141 1.2668 19 6 1.2356 -4.9472 0.0037 20 1 -0.4849 0.8401 -0.0004 21 1 0.3554 -2.3880 0.0005 22 1 4.5407 -3.1540 0.9394 23 1 6.6596 -3.1584 -0.3141 24 1 6.6647 -3.6670 -2.7233 25 1 4.5503 -4.1678 -3.8807 26 1 2.8735 -5.0799 1.5440 27 1 1.3902 -4.1342 2.0982 28 1 0.1498 -4.8521 0.0046 29 1 1.6328 -5.7978 -0.5502 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592137192.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:16 Heat of formation + Delta-G solvation = 56.315453 kcal Electronic energy + Delta-G solvation = -14572.607746 eV Core-core repulsion = 12101.608874 eV Total energy + Delta-G solvation = -2470.998872 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.30313 -36.62501 -35.86865 -33.04601 -30.47696 -30.13262 -29.60151 -23.96436 -22.84034 -22.61134 -21.25932 -19.27066 -17.30068 -16.49729 -15.50169 -14.90813 -14.66593 -14.11220 -13.80446 -13.41189 -12.89644 -12.86998 -12.40919 -11.39637 -11.18106 -11.13680 -10.96024 -10.91401 -10.76344 -10.50825 -10.25632 -10.11617 -9.72202 -9.48014 -8.74509 -8.49760 -8.23496 -6.93454 -5.80629 -3.08723 1.55492 1.64844 2.68317 3.41474 3.47683 3.49700 4.00298 4.51617 4.61567 4.99722 5.16668 5.29534 5.42581 5.55321 5.57180 5.69142 5.91572 6.03067 6.09675 6.25490 6.28601 6.45176 6.54051 6.64957 6.76804 6.85018 6.91226 7.17445 7.72781 8.36639 9.48686 10.01683 10.37646 11.41604 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.010433 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.088086 B = 2683.149427 C = 3053.987480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.673 5.673 10 C 0.192 3.808 11 C -0.015 4.015 12 C -0.090 4.090 13 C -0.124 4.124 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.015 4.015 17 Cl -0.066 7.066 18 C -0.218 4.218 19 C -0.186 4.186 20 H 0.256 0.744 21 H 0.391 0.609 22 H 0.130 0.870 23 H 0.122 0.878 24 H 0.124 0.876 25 H 0.126 0.874 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.779 -9.673 -3.037 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.310 5.310 10 C 0.097 3.903 11 C -0.017 4.017 12 C -0.109 4.109 13 C -0.142 4.142 14 C -0.138 4.138 15 C -0.140 4.140 16 C -0.042 4.042 17 Cl -0.037 7.037 18 C -0.260 4.260 19 C -0.225 4.225 20 H 0.065 0.935 21 H 0.227 0.773 22 H 0.148 0.852 23 H 0.140 0.860 24 H 0.142 0.858 25 H 0.144 0.856 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.714 -9.483 -3.128 13.253 hybrid contribution -0.066 0.983 -0.063 0.987 sum 8.649 -8.500 -3.191 12.539 Atomic orbital electron populations 1.69672 1.05111 1.25695 1.57282 1.24741 0.95485 0.97686 1.02646 0.86143 0.78939 0.84107 0.77230 1.20418 1.21787 1.21778 1.19277 0.91322 0.83454 1.42750 0.90691 1.41842 1.05230 0.98202 1.85684 1.18392 0.90145 0.85664 0.96087 1.19199 0.94698 0.96283 0.91525 1.21033 0.91133 0.98080 1.00631 1.21149 0.98047 1.00533 0.94478 1.20954 0.97272 1.00845 0.94773 1.20943 0.91100 1.02066 0.99863 1.20761 0.87322 1.03588 0.92557 1.98347 1.33740 1.92945 1.78631 1.23702 1.02238 1.06524 0.93548 1.23166 0.98791 0.98704 1.01845 0.93454 0.77320 0.85240 0.85958 0.85837 0.85568 0.90247 0.89107 0.89198 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.06 55.49 0.72 -27.25 15 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 15 3 Si 0.90 22.50 29.55 -169.99 -5.02 17.48 15 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 15 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 15 7 C -0.24 -6.51 9.51 -15.06 -0.14 -6.65 15 8 H 0.08 2.02 6.43 -52.49 -0.34 1.68 15 9 N -0.67 -16.94 5.63 -48.30 -0.27 -17.21 15 10 C 0.19 3.95 1.98 -132.97 -0.26 3.69 15 11 C -0.01 -0.29 4.20 -104.59 -0.44 -0.72 15 12 C -0.09 -1.55 8.62 -39.59 -0.34 -1.89 15 13 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 15 14 C -0.12 -1.65 10.04 -39.59 -0.40 -2.04 15 15 C -0.12 -1.85 9.83 -39.55 -0.39 -2.24 15 16 C -0.02 -0.27 6.27 -39.50 -0.25 -0.52 15 17 Cl -0.07 -1.17 26.64 -51.86 -1.38 -2.55 15 18 C -0.22 -3.98 9.95 -26.69 -0.27 -4.24 15 19 C -0.19 -3.35 8.70 -26.69 -0.23 -3.58 15 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 21 H 0.39 10.53 7.97 -40.82 -0.33 10.21 15 22 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 23 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 24 H 0.12 1.30 8.06 -52.49 -0.42 0.87 15 25 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 27 H 0.09 1.72 8.14 -51.93 -0.42 1.29 15 28 H 0.09 1.62 8.14 -51.93 -0.42 1.20 15 29 H 0.09 1.42 7.92 -51.93 -0.41 1.01 15 LS Contribution 268.15 15.07 4.04 4.04 Total: -1.00 -29.84 268.15 -8.29 -38.13 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -3.17 Total: 8.12 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -3.21 Total: -20.76 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.45 Total: -44.46 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.38 Total: -2.55 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.84 -8.29 -38.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592137192.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.446 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds