Wall clock time and date at job start Sun Mar 29 2020 22:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00398 * 2 1 4 4 H 1.48502 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47062 * 299.99247 * 3 2 1 6 6 H 1.48499 * 109.47300 * 59.99547 * 3 2 1 7 7 C 1.38817 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00472 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99599 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99974 * 180.02562 * 9 7 2 11 11 C 1.50701 * 115.54691 * 325.57827 * 10 9 7 12 12 C 1.38239 * 120.00209 * 92.73196 * 11 10 9 13 13 C 1.38221 * 120.00933 * 179.97438 * 12 11 10 14 14 C 1.38261 * 120.02593 * 359.97438 * 13 12 11 15 15 C 1.38190 * 120.01842 * 359.97438 * 14 13 12 16 16 C 1.38328 * 120.00941 * 272.68684 * 11 10 9 17 17 Cl 1.73602 * 120.01275 * 0.04519 * 16 11 10 18 18 C 1.53000 * 117.50013 * 111.25125 * 10 9 7 19 19 C 1.53002 * 117.49659 * 179.91263 * 10 9 7 20 20 H 0.97003 * 119.99413 * 0.02562 * 1 2 3 21 21 H 0.97006 * 120.00313 * 359.97438 * 9 7 2 22 22 H 1.08000 * 119.99197 * 359.97438 * 12 11 10 23 23 H 1.07995 * 119.98542 * 179.97438 * 13 12 11 24 24 H 1.08001 * 119.99125 * 179.97438 * 14 13 12 25 25 H 1.08000 * 120.01008 * 179.72494 * 15 14 13 26 26 H 1.09000 * 117.49896 * 214.99913 * 18 10 9 27 27 H 1.09002 * 117.49936 * 0.02592 * 18 10 9 28 28 H 1.08993 * 117.50203 * 359.97438 * 19 10 9 29 29 H 1.09003 * 117.49221 * 144.99700 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0578 -3.6569 0.0017 11 6 3.3547 -3.6593 -0.7659 12 6 4.5424 -3.3768 -0.1173 13 6 5.7320 -3.3796 -0.8211 14 6 5.7349 -3.6654 -2.1739 15 6 4.5485 -3.9490 -2.8231 16 6 3.3570 -3.9452 -2.1193 17 17 1.8659 -4.3001 -2.9345 18 6 1.9840 -4.5141 1.2668 19 6 1.2356 -4.9472 0.0037 20 1 -0.4849 0.8401 -0.0004 21 1 0.3554 -2.3880 0.0005 22 1 4.5407 -3.1540 0.9394 23 1 6.6596 -3.1584 -0.3141 24 1 6.6647 -3.6670 -2.7233 25 1 4.5503 -4.1678 -3.8807 26 1 2.8735 -5.0799 1.5440 27 1 1.3902 -4.1342 2.0982 28 1 0.1498 -4.8521 0.0046 29 1 1.6328 -5.7978 -0.5502 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592137192.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:16 Heat of formation + Delta-G solvation = 39.282999 kcal Electronic energy + Delta-G solvation = -14573.346329 eV Core-core repulsion = 12101.608874 eV Total energy + Delta-G solvation = -2471.737454 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.62167 -38.10011 -37.19233 -35.03179 -31.76584 -31.59973 -31.29047 -25.96959 -24.20255 -23.93354 -22.64181 -20.74339 -19.25319 -17.90351 -17.06089 -16.21247 -16.11315 -15.81679 -15.42791 -14.73035 -14.62848 -14.19518 -13.86203 -13.05952 -12.97001 -12.57868 -12.43087 -12.42344 -12.21736 -12.08507 -12.04338 -11.75245 -11.64561 -10.98421 -10.66183 -9.74930 -9.50525 -8.89916 -7.94103 -5.21300 0.32606 0.42422 1.37658 1.45218 1.45888 1.55542 2.53607 2.78684 3.04764 3.47475 3.61530 3.83456 4.01510 4.17249 4.30954 4.42615 4.58598 4.65725 4.73770 4.81434 4.93186 5.04837 5.16527 5.35025 5.42786 5.54512 5.57068 5.63485 5.99667 6.27050 7.33172 8.04514 8.29817 9.29632 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.010433 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.088086 B = 2683.149427 C = 3053.987480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.689 5.689 10 C 0.166 3.834 11 C -0.044 4.044 12 C -0.108 4.108 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.123 4.123 16 C -0.038 4.038 17 Cl -0.078 7.078 18 C -0.203 4.203 19 C -0.171 4.171 20 H 0.249 0.751 21 H 0.376 0.624 22 H 0.127 0.873 23 H 0.156 0.844 24 H 0.165 0.835 25 H 0.148 0.852 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.603 -10.363 -3.518 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.325 5.325 10 C 0.074 3.926 11 C -0.046 4.046 12 C -0.126 4.126 13 C -0.135 4.135 14 C -0.127 4.127 15 C -0.142 4.142 16 C -0.065 4.065 17 Cl -0.049 7.049 18 C -0.244 4.244 19 C -0.209 4.209 20 H 0.058 0.942 21 H 0.209 0.791 22 H 0.145 0.855 23 H 0.174 0.826 24 H 0.183 0.817 25 H 0.166 0.834 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.589 -10.228 -3.603 15.871 hybrid contribution -0.844 1.061 0.076 1.358 sum 10.745 -9.166 -3.527 14.557 Atomic orbital electron populations 1.69821 1.06543 1.25805 1.59952 1.25487 0.96272 1.00800 1.04140 0.85191 0.78499 0.80344 0.76570 1.18855 1.22397 1.22026 1.19554 0.91522 0.84346 1.39877 0.90323 1.41931 1.04685 0.99515 1.86362 1.18695 0.91449 0.84534 0.97900 1.19191 0.94438 0.98824 0.92141 1.21175 0.91724 0.98860 1.00868 1.21550 0.98223 0.98819 0.94924 1.21455 0.98208 0.98362 0.94632 1.21311 0.90634 1.01219 1.00990 1.21021 0.87907 1.04988 0.92558 1.98336 1.34747 1.93106 1.78699 1.23637 1.02828 1.05349 0.92629 1.23155 0.98345 0.97888 1.01527 0.94160 0.79089 0.85545 0.82616 0.81739 0.83411 0.87861 0.90219 0.89798 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.00 13.06 21.65 0.28 -59.71 15 2 C -0.08 -4.34 5.50 84.86 0.47 -3.88 15 3 Si 0.96 46.63 29.55 68.60 2.03 48.66 15 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 15 6 H -0.29 -14.12 7.11 99.48 0.71 -13.41 15 7 C -0.22 -12.22 9.51 84.03 0.80 -11.42 15 8 H 0.08 4.21 6.43 -2.91 -0.02 4.19 15 9 N -0.69 -35.26 5.63 -306.73 -1.73 -36.98 15 10 C 0.17 6.81 1.98 2.86 0.01 6.81 15 11 C -0.04 -1.63 4.20 -19.84 -0.08 -1.72 15 12 C -0.11 -3.47 8.62 22.27 0.19 -3.28 15 13 C -0.12 -2.93 10.05 22.27 0.22 -2.70 15 14 C -0.11 -2.48 10.04 22.26 0.22 -2.26 15 15 C -0.12 -3.37 9.83 22.29 0.22 -3.15 15 16 C -0.04 -1.31 6.27 22.32 0.14 -1.17 15 17 Cl -0.08 -2.74 26.64 -2.72 -0.07 -2.81 15 18 C -0.20 -7.24 9.95 30.62 0.30 -6.93 15 19 C -0.17 -6.05 8.70 30.62 0.27 -5.78 15 20 H 0.25 14.99 8.31 -92.71 -0.77 14.22 15 21 H 0.38 20.97 7.97 -92.70 -0.74 20.23 15 22 H 0.13 4.03 8.06 -2.91 -0.02 4.01 15 23 H 0.16 2.80 8.06 -2.91 -0.02 2.78 15 24 H 0.17 2.43 8.06 -2.91 -0.02 2.41 15 25 H 0.15 3.32 8.06 -2.91 -0.02 3.30 15 26 H 0.10 3.16 8.14 -2.39 -0.02 3.14 15 27 H 0.08 3.00 8.14 -2.39 -0.02 2.98 15 28 H 0.08 3.06 8.14 -2.39 -0.02 3.04 15 29 H 0.10 3.27 7.92 -2.39 -0.02 3.25 15 Total: -1.00 -64.88 268.15 3.69 -61.19 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.42 Total: 25.14 kcal Atomic # 6 Polarization: -38.24 SS G_CDS: 2.76 Total: -35.48 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -1.44 Total: -96.70 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.07 Total: -2.81 kcal Total: -64.88 3.69 -61.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592137192.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.474 kcal (2) G-P(sol) polarization free energy of solvation -64.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds