Wall clock time and date at job start Sun Mar 29 2020 21:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00060 * 2 1 4 4 C 1.50698 * 109.47144 * 179.97438 * 3 2 1 5 5 C 1.35348 * 126.75498 * 95.00025 * 4 3 2 6 6 N 1.35308 * 106.17926 * 180.02562 * 5 4 3 7 7 C 1.46500 * 125.86894 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47146 * 123.94980 * 7 6 5 9 9 C 1.50698 * 115.54782 * 295.27038 * 8 7 6 10 10 H 1.07994 * 120.00245 * 99.43013 * 9 8 7 11 11 C 1.37880 * 119.99592 * 279.43149 * 9 8 7 12 12 N 1.31509 * 120.00189 * 5.61825 * 11 9 8 13 13 Si 1.86810 * 119.99749 * 185.62346 * 11 9 8 14 14 H 1.48491 * 109.46917 * 269.99650 * 13 11 9 15 15 H 1.48506 * 109.46996 * 29.99911 * 13 11 9 16 16 H 1.48498 * 109.46840 * 149.99593 * 13 11 9 17 17 C 1.53001 * 117.51822 * 80.96717 * 8 7 6 18 18 C 1.53001 * 117.50039 * 149.59732 * 8 7 6 19 19 N 1.28721 * 108.26434 * 0.26294 * 6 5 4 20 20 N 1.28635 * 110.17513 * 359.56179 * 19 6 5 21 21 H 1.09003 * 109.46666 * 60.00365 * 1 2 3 22 22 H 1.09004 * 109.46675 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47443 * 300.00203 * 1 2 3 24 24 H 1.00904 * 111.00120 * 123.95188 * 2 1 3 25 25 H 1.09003 * 109.46806 * 59.99624 * 3 2 1 26 26 H 1.08996 * 109.47054 * 299.99949 * 3 2 1 27 27 H 1.08005 * 126.90772 * 0.04235 * 5 4 3 28 28 H 1.08996 * 109.47226 * 3.94839 * 7 6 5 29 29 H 1.09001 * 109.47006 * 243.94736 * 7 6 5 30 30 H 0.97000 * 119.99705 * 175.44821 * 12 11 9 31 31 H 1.08992 * 117.49732 * 214.96969 * 17 8 7 32 32 H 1.09001 * 117.49875 * 359.97438 * 17 8 7 33 33 H 1.09005 * 117.49464 * 359.97438 * 18 8 7 34 34 H 1.08996 * 117.50034 * 144.99263 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.3145 1.4039 -1.0793 6 7 5.5795 1.3282 -0.6051 7 6 6.8022 1.3663 -1.4113 8 6 7.7031 2.5004 -0.9180 9 6 7.1500 3.8916 -1.0903 10 1 6.6877 4.3962 -0.2549 11 6 7.2341 4.5201 -2.3146 12 7 7.6957 3.8671 -3.3587 13 14 6.6926 6.2993 -2.4902 14 1 5.2513 6.3453 -2.8444 15 1 6.9097 7.0119 -1.2055 16 1 7.4865 6.9550 -3.5603 17 6 8.5668 2.2313 0.3159 18 6 9.2148 2.3176 -1.0674 19 7 5.5239 1.2118 0.6756 20 7 4.2991 1.2160 1.0688 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8306 -0.5261 0.7814 25 1 1.6459 1.8948 0.8900 26 1 1.6460 1.8948 -0.8900 27 1 4.0137 1.5028 -2.1119 28 1 6.5432 1.5364 -2.4563 29 1 7.3290 0.4168 -1.3174 30 1 7.6934 4.2870 -4.2331 31 1 8.7349 3.0605 1.0030 32 1 8.4929 1.2463 0.7768 33 1 9.5674 1.3892 -1.5167 34 1 9.8093 3.2035 -1.2904 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594651166.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:08 Heat of formation + Delta-G solvation = 119.409670 kcal Electronic energy + Delta-G solvation = -16619.633765 eV Core-core repulsion = 13976.506207 eV Total energy + Delta-G solvation = -2643.127558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.45185 -36.99515 -36.03599 -33.09120 -32.11614 -30.88910 -27.36752 -26.57546 -25.50608 -23.51994 -21.54617 -21.13946 -20.69443 -19.23954 -16.84480 -15.98510 -15.63897 -15.45400 -14.76103 -14.49224 -14.30514 -13.89771 -13.58845 -13.07206 -12.58046 -12.16647 -11.99136 -11.75787 -11.64074 -11.10734 -11.06163 -10.79738 -10.62659 -10.35049 -10.19643 -9.97533 -9.24127 -8.96721 -8.62848 -8.60877 -8.37822 -8.28715 -6.22855 -4.29102 2.43877 3.10398 3.18922 3.26770 3.27815 3.32153 4.27308 4.47535 4.93900 5.05396 5.14627 5.22965 5.38228 5.42041 5.58465 5.68869 5.76163 5.80571 5.81249 6.07285 6.14685 6.31642 6.41721 6.67652 6.71616 6.78912 6.92474 6.99998 7.17051 7.33446 7.37207 7.49095 7.71987 8.22512 8.74153 9.29623 9.38656 10.85603 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.007322 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.910856 B = 3823.312657 C = 4517.704461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.692 5.692 3 C 0.153 3.847 4 C -0.046 4.046 5 C -0.023 4.023 6 N -0.250 5.250 7 C 0.150 3.850 8 C 0.024 3.976 9 C -0.492 4.492 10 H 0.059 0.941 11 C 0.074 3.926 12 N -0.882 5.882 13 Si 0.891 3.109 14 H -0.279 1.279 15 H -0.272 1.272 16 H -0.284 1.284 17 C -0.190 4.190 18 C -0.151 4.151 19 N -0.076 5.076 20 N -0.291 5.291 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.021 0.979 24 H 0.346 0.654 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.179 0.821 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.263 0.737 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 -5.607 1.372 9.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C 0.023 3.977 4 C -0.185 4.185 5 C -0.176 4.176 6 N -0.041 5.041 7 C 0.030 3.970 8 C 0.023 3.977 9 C -0.530 4.530 10 H 0.077 0.923 11 C -0.130 4.130 12 N -0.518 5.518 13 Si 0.718 3.282 14 H -0.205 1.205 15 H -0.197 1.197 16 H -0.210 1.210 17 C -0.227 4.227 18 C -0.189 4.189 19 N -0.056 5.056 20 N -0.157 5.157 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.039 0.961 24 H 0.163 0.837 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.197 0.803 28 H 0.128 0.872 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.094 -5.767 1.779 9.314 hybrid contribution -0.915 1.455 -0.559 1.807 sum -8.009 -4.312 1.220 9.178 Atomic orbital electron populations 1.22184 0.87929 1.01689 1.00357 1.60441 1.07235 1.14169 1.50485 1.19965 0.86806 0.89626 1.01328 1.21501 0.96549 1.10647 0.89846 1.23219 0.84195 1.08783 1.01429 1.47403 1.07966 1.42624 1.06101 1.21965 0.81459 0.99258 0.94366 1.18919 0.88587 0.93443 0.96745 1.20374 1.38972 0.97175 0.96456 0.92324 1.24970 0.94227 0.97917 0.95858 1.69928 1.45059 1.37560 0.99285 0.86598 0.78598 0.84957 0.78053 1.20532 1.19722 1.20961 1.22920 1.07832 1.00498 0.91456 1.22618 0.97403 1.00636 0.98289 1.78173 1.14662 1.19066 0.93706 1.74920 0.96103 1.18368 1.26322 0.91697 0.91572 0.96085 0.83678 0.93796 0.89706 0.80340 0.87159 0.91251 0.92697 0.90228 0.90918 0.91493 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.70 60.06 0.64 0.92 16 2 N -0.69 -8.88 6.84 -122.42 -0.84 -9.71 16 3 C 0.15 2.18 6.25 -4.98 -0.03 2.15 16 4 C -0.05 -0.84 6.76 -82.77 -0.56 -1.40 16 5 C -0.02 -0.43 11.50 -17.05 -0.20 -0.62 16 6 N -0.25 -5.21 3.33 -61.26 -0.20 -5.41 16 7 C 0.15 3.13 6.28 -4.04 -0.03 3.10 16 8 C 0.02 0.57 1.31 -155.66 -0.20 0.36 16 9 C -0.49 -12.91 8.71 -34.44 -0.30 -13.21 16 10 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 11 C 0.07 1.91 5.42 -17.82 -0.10 1.81 16 12 N -0.88 -23.05 13.10 55.43 0.73 -22.32 16 13 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 C -0.19 -4.09 9.86 -26.73 -0.26 -4.35 16 18 C -0.15 -3.30 9.67 -26.73 -0.26 -3.56 16 19 N -0.08 -1.69 12.87 60.35 0.78 -0.91 16 20 N -0.29 -6.08 12.41 33.29 0.41 -5.67 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.35 4.48 8.81 -39.29 -0.35 4.14 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.18 2.86 8.06 -52.48 -0.42 2.43 16 28 H 0.11 2.35 8.07 -51.93 -0.42 1.93 16 29 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 30 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 31 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -28.32 298.32 -5.90 -34.23 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.96 Total: 4.62 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.29 Total: -14.80 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.87 Total: -44.03 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.32 -5.90 -34.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651166.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.635 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds