Wall clock time and date at job start Sun Mar 29 2020 21:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00060 * 2 1 4 4 C 1.50698 * 109.47144 * 179.97438 * 3 2 1 5 5 C 1.35348 * 126.75498 * 95.00025 * 4 3 2 6 6 N 1.35308 * 106.17926 * 180.02562 * 5 4 3 7 7 C 1.46500 * 125.86894 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47146 * 123.94980 * 7 6 5 9 9 C 1.50698 * 115.54782 * 295.27038 * 8 7 6 10 10 H 1.07994 * 120.00245 * 99.43013 * 9 8 7 11 11 C 1.37880 * 119.99592 * 279.43149 * 9 8 7 12 12 N 1.31509 * 120.00189 * 5.61825 * 11 9 8 13 13 Si 1.86810 * 119.99749 * 185.62346 * 11 9 8 14 14 H 1.48491 * 109.46917 * 269.99650 * 13 11 9 15 15 H 1.48506 * 109.46996 * 29.99911 * 13 11 9 16 16 H 1.48498 * 109.46840 * 149.99593 * 13 11 9 17 17 C 1.53001 * 117.51822 * 80.96717 * 8 7 6 18 18 C 1.53001 * 117.50039 * 149.59732 * 8 7 6 19 19 N 1.28721 * 108.26434 * 0.26294 * 6 5 4 20 20 N 1.28635 * 110.17513 * 359.56179 * 19 6 5 21 21 H 1.09003 * 109.46666 * 60.00365 * 1 2 3 22 22 H 1.09004 * 109.46675 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47443 * 300.00203 * 1 2 3 24 24 H 1.00904 * 111.00120 * 123.95188 * 2 1 3 25 25 H 1.09003 * 109.46806 * 59.99624 * 3 2 1 26 26 H 1.08996 * 109.47054 * 299.99949 * 3 2 1 27 27 H 1.08005 * 126.90772 * 0.04235 * 5 4 3 28 28 H 1.08996 * 109.47226 * 3.94839 * 7 6 5 29 29 H 1.09001 * 109.47006 * 243.94736 * 7 6 5 30 30 H 0.97000 * 119.99705 * 175.44821 * 12 11 9 31 31 H 1.08992 * 117.49732 * 214.96969 * 17 8 7 32 32 H 1.09001 * 117.49875 * 359.97438 * 17 8 7 33 33 H 1.09005 * 117.49464 * 359.97438 * 18 8 7 34 34 H 1.08996 * 117.50034 * 144.99263 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.3145 1.4039 -1.0793 6 7 5.5795 1.3282 -0.6051 7 6 6.8022 1.3663 -1.4113 8 6 7.7031 2.5004 -0.9180 9 6 7.1500 3.8916 -1.0903 10 1 6.6877 4.3962 -0.2549 11 6 7.2341 4.5201 -2.3146 12 7 7.6957 3.8671 -3.3587 13 14 6.6926 6.2993 -2.4902 14 1 5.2513 6.3453 -2.8444 15 1 6.9097 7.0119 -1.2055 16 1 7.4865 6.9550 -3.5603 17 6 8.5668 2.2313 0.3159 18 6 9.2148 2.3176 -1.0674 19 7 5.5239 1.2118 0.6756 20 7 4.2991 1.2160 1.0688 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8306 -0.5261 0.7814 25 1 1.6459 1.8948 0.8900 26 1 1.6460 1.8948 -0.8900 27 1 4.0137 1.5028 -2.1119 28 1 6.5432 1.5364 -2.4563 29 1 7.3290 0.4168 -1.3174 30 1 7.6934 4.2870 -4.2331 31 1 8.7349 3.0605 1.0030 32 1 8.4929 1.2463 0.7768 33 1 9.5674 1.3892 -1.5167 34 1 9.8093 3.2035 -1.2904 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594651166.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:08 Heat of formation + Delta-G solvation = 100.749939 kcal Electronic energy + Delta-G solvation = -16620.442911 eV Core-core repulsion = 13976.506207 eV Total energy + Delta-G solvation = -2643.936705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.98404 -38.71731 -37.10783 -34.66453 -34.06648 -32.25338 -28.89392 -27.86175 -27.41358 -24.52402 -23.15054 -22.84876 -22.17431 -20.98542 -18.50178 -17.55467 -17.07600 -16.81266 -16.66288 -15.88112 -15.56611 -15.37929 -14.84659 -14.71656 -13.87791 -13.77056 -13.35178 -13.09046 -13.01114 -12.88236 -12.61110 -12.47115 -12.29479 -12.08329 -11.81908 -11.64619 -11.00577 -10.75679 -10.46818 -10.16074 -10.02191 -9.37145 -8.20308 -6.31236 0.91581 1.34831 1.39478 1.47178 1.63811 1.74271 2.36629 3.07528 3.39074 3.46769 3.68254 3.89615 4.12823 4.16111 4.23076 4.44718 4.56061 4.57368 4.60121 4.65193 4.72925 4.85000 4.99114 5.09470 5.14628 5.22334 5.35947 5.41957 5.58292 5.67595 5.92330 6.02224 6.30857 6.38714 6.70852 7.37957 7.74355 8.87058 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.007322 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.910856 B = 3823.312657 C = 4517.704461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.700 5.700 3 C 0.157 3.843 4 C -0.041 4.041 5 C -0.031 4.031 6 N -0.256 5.256 7 C 0.158 3.842 8 C 0.002 3.998 9 C -0.508 4.508 10 H 0.030 0.970 11 C 0.044 3.956 12 N -0.894 5.894 13 Si 0.938 3.062 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.277 1.277 17 C -0.179 4.179 18 C -0.143 4.143 19 N -0.108 5.108 20 N -0.310 5.310 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.027 0.973 24 H 0.343 0.657 25 H 0.046 0.954 26 H 0.102 0.898 27 H 0.204 0.796 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.266 0.734 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 -6.054 0.683 11.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.331 5.331 3 C 0.027 3.973 4 C -0.181 4.181 5 C -0.185 4.185 6 N -0.048 5.048 7 C 0.038 3.962 8 C 0.001 3.999 9 C -0.546 4.546 10 H 0.048 0.952 11 C -0.159 4.159 12 N -0.531 5.531 13 Si 0.764 3.236 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.202 1.202 17 C -0.217 4.217 18 C -0.181 4.181 19 N -0.087 5.087 20 N -0.176 5.176 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.046 0.954 24 H 0.160 0.840 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.221 0.779 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.176 -6.221 1.098 10.332 hybrid contribution -0.629 1.595 -0.321 1.744 sum -8.805 -4.626 0.777 9.976 Atomic orbital electron populations 1.22264 0.85887 1.02874 1.01042 1.60449 1.09111 1.13076 1.50449 1.20051 0.84248 0.90784 1.02266 1.22131 0.98275 1.08866 0.88843 1.23772 0.83551 1.08290 1.02849 1.47429 1.08566 1.42843 1.05936 1.21800 0.81382 0.99245 0.93798 1.18998 0.89560 0.93099 0.98230 1.20384 1.39520 0.98841 0.95812 0.95167 1.25419 0.94367 1.00465 0.95620 1.69964 1.45287 1.38436 0.99425 0.85868 0.78570 0.81632 0.77507 1.19935 1.20729 1.20245 1.22858 1.06943 1.00800 0.91055 1.22570 0.96274 1.00887 0.98416 1.78133 1.15417 1.20795 0.94392 1.74877 0.96283 1.18918 1.27476 0.90904 0.90203 0.95418 0.84027 0.93615 0.87994 0.77902 0.87690 0.89121 0.92438 0.91406 0.89368 0.89132 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.70 127.69 1.37 1.85 16 2 N -0.70 -16.50 6.84 -541.23 -3.70 -20.20 16 3 C 0.16 4.16 6.25 85.56 0.53 4.69 16 4 C -0.04 -1.45 6.76 41.59 0.28 -1.17 16 5 C -0.03 -1.13 11.50 83.49 0.96 -0.17 16 6 N -0.26 -10.50 3.33 -347.73 -1.16 -11.65 16 7 C 0.16 6.44 6.28 86.38 0.54 6.98 16 8 C 0.00 0.11 1.31 -52.93 -0.07 0.04 16 9 C -0.51 -26.81 8.71 25.60 0.22 -26.59 16 10 H 0.03 1.73 7.82 -2.91 -0.02 1.70 16 11 C 0.04 2.24 5.42 84.66 0.46 2.69 16 12 N -0.89 -46.02 13.10 21.45 0.28 -45.74 16 13 Si 0.94 41.80 29.54 68.60 2.03 43.82 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 17 C -0.18 -7.64 9.86 30.60 0.30 -7.34 16 18 C -0.14 -6.13 9.67 30.60 0.30 -5.84 16 19 N -0.11 -4.76 12.87 37.02 0.48 -4.28 16 20 N -0.31 -12.83 12.41 -48.60 -0.60 -13.43 16 21 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 23 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.34 8.37 8.81 -89.69 -0.79 7.58 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.20 6.09 8.06 -2.91 -0.02 6.06 16 28 H 0.10 4.36 8.07 -2.39 -0.02 4.34 16 29 H 0.09 3.25 8.10 -2.39 -0.02 3.23 16 30 H 0.27 13.10 8.32 -92.71 -0.77 12.32 16 31 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 34 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -59.24 298.32 2.51 -56.73 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.30 Total: 19.63 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 4.89 Total: -24.86 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -4.71 Total: -95.31 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -59.24 2.51 -56.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651166.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.475 kcal (2) G-P(sol) polarization free energy of solvation -59.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds