Wall clock time and date at job start Sun Mar 29 2020 21:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47392 * 285.81200 * 3 2 1 5 5 N 1.46898 * 109.47210 * 179.47471 * 4 3 2 6 6 C 1.46899 * 110.99916 * 297.54351 * 5 4 3 7 7 C 1.50694 * 109.47572 * 292.84316 * 6 5 4 8 8 H 1.07997 * 119.99799 * 354.99328 * 7 6 5 9 9 C 1.37879 * 120.00398 * 174.98502 * 7 6 5 10 10 N 1.31519 * 119.99338 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00133 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47011 * 60.00444 * 11 9 7 13 13 H 1.48503 * 109.47078 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47429 * 300.00102 * 11 9 7 15 15 C 1.46902 * 111.00399 * 61.50298 * 5 4 3 16 16 C 1.52996 * 109.47117 * 66.04332 * 15 5 4 17 17 C 1.52999 * 109.47211 * 180.02562 * 16 15 5 18 18 C 1.53780 * 113.61572 * 85.86139 * 17 16 15 19 19 C 1.54054 * 86.98631 * 140.02361 * 18 17 16 20 20 C 1.53777 * 113.61793 * 183.46956 * 17 16 15 21 21 H 1.09003 * 109.46841 * 165.81379 * 3 2 1 22 22 H 1.08996 * 109.47603 * 45.81478 * 3 2 1 23 23 H 1.08993 * 109.46751 * 59.47502 * 4 3 2 24 24 H 1.08997 * 109.47168 * 299.47409 * 4 3 2 25 25 H 1.09005 * 109.47203 * 52.84644 * 6 5 4 26 26 H 1.09007 * 109.47363 * 172.84026 * 6 5 4 27 27 H 0.97000 * 119.98992 * 179.97438 * 10 9 7 28 28 H 1.09006 * 109.46536 * 306.04734 * 15 5 4 29 29 H 1.08995 * 109.47301 * 186.04634 * 15 5 4 30 30 H 1.08990 * 109.47183 * 60.00340 * 16 15 5 31 31 H 1.09005 * 109.47265 * 300.00424 * 16 15 5 32 32 H 1.09007 * 112.84856 * 314.66863 * 17 16 15 33 33 H 1.09001 * 113.61612 * 254.61341 * 18 17 16 34 34 H 1.09003 * 113.61388 * 25.51822 * 18 17 16 35 35 H 1.09002 * 113.61912 * 220.02536 * 19 18 17 36 36 H 1.08995 * 113.69062 * 89.13020 * 19 18 17 37 37 H 1.09001 * 113.61600 * 334.48594 * 20 17 16 38 38 H 1.09004 * 113.61347 * 105.29731 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1182 -0.3922 1.3879 5 7 4.5871 -0.4037 1.3844 6 6 5.1034 -1.4079 0.4447 7 6 4.7589 -2.7873 0.9440 8 1 4.2830 -2.9102 1.9057 9 6 5.0509 -3.8925 0.1731 10 7 5.6307 -3.7427 -0.9978 11 14 4.6245 -5.6024 0.7924 12 1 3.1592 -5.6972 1.0147 13 1 5.0390 -6.6115 -0.2151 14 1 5.3366 -5.8580 2.0702 15 6 5.1234 0.9291 1.0779 16 6 4.7697 1.8942 2.2112 17 6 5.3277 3.2825 1.8917 18 6 4.3922 4.1368 1.0200 19 6 4.7946 5.3330 1.9034 20 6 5.0989 4.3111 3.0116 21 1 2.9708 0.9972 -0.2519 22 1 2.9716 -0.7154 -0.7369 23 1 2.7476 -1.3848 1.6436 24 1 2.7623 0.3292 2.1234 25 1 4.6530 -1.2534 -0.5359 26 1 6.1862 -1.3097 0.3666 27 1 5.8365 -4.5203 -1.5400 28 1 4.6896 1.2895 0.1451 29 1 6.2070 0.8701 0.9758 30 1 5.2033 1.5338 3.1439 31 1 3.6860 1.9532 2.3133 32 1 6.3554 3.2525 1.5296 33 1 4.7211 4.2267 -0.0153 34 1 3.3410 3.8624 1.1089 35 1 3.9653 5.9997 2.1400 36 1 5.6763 5.8647 1.5456 37 1 4.2406 4.0844 3.6441 38 1 5.9976 4.5405 3.5841 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595394799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:45 Heat of formation + Delta-G solvation = 34.340955 kcal Electronic energy + Delta-G solvation = -16657.301961 eV Core-core repulsion = 14114.025890 eV Total energy + Delta-G solvation = -2543.276071 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.08201 -37.63085 -35.91307 -32.78514 -31.38391 -29.86034 -26.74920 -25.63505 -24.69135 -23.60871 -21.45340 -19.55384 -19.30840 -17.40823 -16.25673 -15.58497 -15.49289 -14.76244 -14.59648 -14.37983 -13.67470 -13.42411 -13.13225 -12.89289 -12.44670 -12.26428 -12.02820 -11.96993 -11.69100 -11.48519 -11.26147 -11.02993 -10.79897 -10.67356 -10.59165 -10.44142 -10.22467 -10.18428 -9.99756 -9.65181 -9.22562 -8.46740 -7.32786 -6.06948 -4.08374 3.10629 3.13304 3.32469 3.36904 3.39858 4.33086 4.42196 4.60748 4.66923 4.73716 4.86278 5.04706 5.29016 5.36872 5.49744 5.57519 5.61139 5.73436 5.75929 5.79954 5.82760 5.86327 5.87810 6.00074 6.13147 6.23170 6.29524 6.44589 6.54391 6.61434 6.69776 7.21061 7.26467 7.76234 7.88483 8.02924 8.10113 8.47548 8.99651 9.56748 11.03325 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.005965 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.495895 B = 4693.066715 C = 5431.877446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.225 3.775 3 C -0.075 4.075 4 C 0.072 3.928 5 N -0.529 5.529 6 C 0.186 3.814 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.058 3.942 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.050 3.950 16 C -0.107 4.107 17 C -0.108 4.108 18 C -0.139 4.139 19 C -0.145 4.145 20 C -0.138 4.138 21 H 0.100 0.900 22 H 0.121 0.879 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.004 0.996 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 14.070 3.942 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.092 4.092 3 C -0.117 4.117 4 C -0.058 4.058 5 N -0.251 5.251 6 C 0.061 3.939 7 C -0.548 4.548 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.079 4.079 16 C -0.144 4.144 17 C -0.127 4.127 18 C -0.176 4.176 19 C -0.182 4.182 20 C -0.175 4.175 21 H 0.118 0.882 22 H 0.139 0.861 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.021 0.979 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.324 13.817 4.259 14.519 hybrid contribution 0.067 -0.802 -0.695 1.064 sum -1.257 13.015 3.564 13.553 Atomic orbital electron populations 1.81131 1.13220 1.10007 1.09788 1.29322 0.95314 0.92215 0.92370 1.20257 0.81409 1.05002 1.04983 1.22065 0.89498 1.02658 0.91628 1.62376 1.04711 1.04552 1.53486 1.19846 0.95504 0.89287 0.89268 1.21116 1.39482 0.90248 1.03988 0.91847 1.24957 0.95294 0.99269 0.94862 1.69935 1.42239 1.30409 1.11156 0.86609 0.78839 0.83763 0.78526 1.20281 1.21405 1.20153 1.22134 1.00086 0.89813 0.95845 1.21601 1.00445 0.92835 0.99555 1.22532 0.99575 0.93976 0.96579 1.23031 0.99828 0.96318 0.98425 1.22857 1.01101 0.96479 0.97765 1.22928 1.01553 0.96588 0.96442 0.88208 0.86149 0.89231 0.91756 0.97878 0.95326 0.92842 0.95320 0.91329 0.91208 0.92142 0.89389 0.91746 0.90274 0.91966 0.90531 0.90278 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.51 18.54 42.15 0.78 -7.73 16 2 C 0.23 3.69 15.43 -20.76 -0.32 3.37 16 3 C -0.07 -1.13 5.05 -29.52 -0.15 -1.28 16 4 C 0.07 1.20 4.91 -3.83 -0.02 1.18 16 5 N -0.53 -9.84 4.69 -236.08 -1.11 -10.95 16 6 C 0.19 4.30 4.53 -4.98 -0.02 4.28 16 7 C -0.51 -13.28 8.39 -34.44 -0.29 -13.57 16 8 H 0.06 1.65 7.38 -52.49 -0.39 1.26 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.32 13.29 55.43 0.74 -24.59 16 11 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.05 0.75 4.74 -3.83 -0.02 0.73 16 16 C -0.11 -1.34 4.97 -26.73 -0.13 -1.47 16 17 C -0.11 -1.15 3.64 -89.81 -0.33 -1.48 16 18 C -0.14 -1.38 7.65 -25.78 -0.20 -1.58 16 19 C -0.14 -1.30 8.09 -25.78 -0.21 -1.51 16 20 C -0.14 -1.32 7.64 -25.92 -0.20 -1.52 16 21 H 0.10 1.28 6.34 -51.93 -0.33 0.95 16 22 H 0.12 2.06 6.28 -51.93 -0.33 1.73 16 23 H 0.09 1.69 6.98 -51.93 -0.36 1.33 16 24 H 0.06 0.94 6.40 -51.93 -0.33 0.61 16 25 H 0.00 0.08 6.02 -51.93 -0.31 -0.23 16 26 H 0.03 0.72 7.91 -51.92 -0.41 0.31 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.03 0.41 6.06 -51.93 -0.31 0.09 16 29 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.75 6.25 -51.93 -0.32 0.42 16 32 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 308.58 15.07 4.65 4.65 Total: -1.00 -28.15 308.58 -7.95 -36.11 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.01 Total: -2.08 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -1.98 Total: -11.38 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.41 Total: -43.26 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.15 -7.95 -36.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595394799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.447 kcal (2) G-P(sol) polarization free energy of solvation -28.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds