Wall clock time and date at job start Sun Mar 29 2020 21:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47392 * 285.81200 * 3 2 1 5 5 N 1.46898 * 109.47210 * 179.47471 * 4 3 2 6 6 C 1.46899 * 110.99916 * 297.54351 * 5 4 3 7 7 C 1.50694 * 109.47572 * 292.84316 * 6 5 4 8 8 H 1.07997 * 119.99799 * 354.99328 * 7 6 5 9 9 C 1.37879 * 120.00398 * 174.98502 * 7 6 5 10 10 N 1.31519 * 119.99338 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00133 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47011 * 60.00444 * 11 9 7 13 13 H 1.48503 * 109.47078 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47429 * 300.00102 * 11 9 7 15 15 C 1.46902 * 111.00399 * 61.50298 * 5 4 3 16 16 C 1.52996 * 109.47117 * 66.04332 * 15 5 4 17 17 C 1.52999 * 109.47211 * 180.02562 * 16 15 5 18 18 C 1.53780 * 113.61572 * 85.86139 * 17 16 15 19 19 C 1.54054 * 86.98631 * 140.02361 * 18 17 16 20 20 C 1.53777 * 113.61793 * 183.46956 * 17 16 15 21 21 H 1.09003 * 109.46841 * 165.81379 * 3 2 1 22 22 H 1.08996 * 109.47603 * 45.81478 * 3 2 1 23 23 H 1.08993 * 109.46751 * 59.47502 * 4 3 2 24 24 H 1.08997 * 109.47168 * 299.47409 * 4 3 2 25 25 H 1.09005 * 109.47203 * 52.84644 * 6 5 4 26 26 H 1.09007 * 109.47363 * 172.84026 * 6 5 4 27 27 H 0.97000 * 119.98992 * 179.97438 * 10 9 7 28 28 H 1.09006 * 109.46536 * 306.04734 * 15 5 4 29 29 H 1.08995 * 109.47301 * 186.04634 * 15 5 4 30 30 H 1.08990 * 109.47183 * 60.00340 * 16 15 5 31 31 H 1.09005 * 109.47265 * 300.00424 * 16 15 5 32 32 H 1.09007 * 112.84856 * 314.66863 * 17 16 15 33 33 H 1.09001 * 113.61612 * 254.61341 * 18 17 16 34 34 H 1.09003 * 113.61388 * 25.51822 * 18 17 16 35 35 H 1.09002 * 113.61912 * 220.02536 * 19 18 17 36 36 H 1.08995 * 113.69062 * 89.13020 * 19 18 17 37 37 H 1.09001 * 113.61600 * 334.48594 * 20 17 16 38 38 H 1.09004 * 113.61347 * 105.29731 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1182 -0.3922 1.3879 5 7 4.5871 -0.4037 1.3844 6 6 5.1034 -1.4079 0.4447 7 6 4.7589 -2.7873 0.9440 8 1 4.2830 -2.9102 1.9057 9 6 5.0509 -3.8925 0.1731 10 7 5.6307 -3.7427 -0.9978 11 14 4.6245 -5.6024 0.7924 12 1 3.1592 -5.6972 1.0147 13 1 5.0390 -6.6115 -0.2151 14 1 5.3366 -5.8580 2.0702 15 6 5.1234 0.9291 1.0779 16 6 4.7697 1.8942 2.2112 17 6 5.3277 3.2825 1.8917 18 6 4.3922 4.1368 1.0200 19 6 4.7946 5.3330 1.9034 20 6 5.0989 4.3111 3.0116 21 1 2.9708 0.9972 -0.2519 22 1 2.9716 -0.7154 -0.7369 23 1 2.7476 -1.3848 1.6436 24 1 2.7623 0.3292 2.1234 25 1 4.6530 -1.2534 -0.5359 26 1 6.1862 -1.3097 0.3666 27 1 5.8365 -4.5203 -1.5400 28 1 4.6896 1.2895 0.1451 29 1 6.2070 0.8701 0.9758 30 1 5.2033 1.5338 3.1439 31 1 3.6860 1.9532 2.3133 32 1 6.3554 3.2525 1.5296 33 1 4.7211 4.2267 -0.0153 34 1 3.3410 3.8624 1.1089 35 1 3.9653 5.9997 2.1400 36 1 5.6763 5.8647 1.5456 37 1 4.2406 4.0844 3.6441 38 1 5.9976 4.5405 3.5841 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595394799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:44 Heat of formation + Delta-G solvation = 18.968936 kcal Electronic energy + Delta-G solvation = -16657.968541 eV Core-core repulsion = 14114.025890 eV Total energy + Delta-G solvation = -2543.942652 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06255 -38.89482 -37.32538 -34.74558 -32.57755 -31.36067 -28.42881 -26.42691 -25.90302 -25.12818 -22.74098 -20.91233 -20.13117 -18.81737 -18.19391 -16.93340 -16.44691 -16.30337 -15.95773 -15.60138 -15.02828 -14.75388 -14.41067 -14.33747 -13.73144 -13.50065 -13.20190 -13.18732 -13.00027 -12.87575 -12.77554 -12.63037 -12.40720 -12.09671 -11.86575 -11.81957 -11.37154 -11.30948 -11.24609 -10.85661 -10.69303 -10.51110 -8.85692 -8.12673 -6.19820 1.45771 1.46164 1.53622 1.75891 1.79224 2.45229 3.00973 3.21174 3.46026 3.85739 3.89590 4.02891 4.10641 4.17205 4.26933 4.40594 4.53023 4.70887 4.75097 4.88220 4.88492 4.97946 5.00333 5.08511 5.17620 5.18151 5.21818 5.29783 5.40013 5.43914 5.51398 5.61091 5.76130 5.78118 6.17604 6.40478 6.58781 6.76090 6.97261 7.49415 8.96705 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.005965 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.495895 B = 4693.066715 C = 5431.877446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.245 3.755 3 C -0.061 4.061 4 C 0.074 3.926 5 N -0.537 5.537 6 C 0.199 3.801 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.952 3.048 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.271 1.271 15 C 0.051 3.949 16 C -0.096 4.096 17 C -0.110 4.110 18 C -0.140 4.140 19 C -0.139 4.139 20 C -0.136 4.136 21 H 0.130 0.870 22 H 0.102 0.898 23 H 0.064 0.936 24 H 0.091 0.909 25 H -0.006 1.006 26 H 0.002 0.998 27 H 0.262 0.738 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.359 15.233 4.633 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.071 4.071 3 C -0.103 4.103 4 C -0.056 4.056 5 N -0.260 5.260 6 C 0.073 3.927 7 C -0.556 4.556 8 H 0.078 0.922 9 C -0.189 4.189 10 N -0.571 5.571 11 Si 0.779 3.221 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.077 4.077 16 C -0.134 4.134 17 C -0.129 4.129 18 C -0.177 4.177 19 C -0.177 4.177 20 C -0.173 4.173 21 H 0.148 0.852 22 H 0.120 0.880 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.012 0.988 26 H 0.020 0.980 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.803 14.997 4.967 15.900 hybrid contribution 0.240 -1.119 -0.886 1.447 sum -1.563 13.878 4.081 14.549 Atomic orbital electron populations 1.81157 1.14146 1.11197 1.10744 1.29363 0.95208 0.91161 0.91410 1.20155 0.80529 1.06104 1.03487 1.22019 0.88208 1.02192 0.93140 1.62249 1.05967 1.05516 1.52235 1.19504 0.93837 0.89684 0.89695 1.21459 1.38642 0.91809 1.03684 0.92205 1.25688 0.95408 1.02753 0.95078 1.70041 1.43569 1.31223 1.12255 0.85690 0.78677 0.79738 0.78040 1.19815 1.21269 1.19653 1.22201 0.99425 0.88449 0.97635 1.21507 1.00847 0.93128 0.97878 1.22526 0.99643 0.93002 0.97731 1.23053 0.99601 0.96515 0.98558 1.22845 1.01638 0.96230 0.96971 1.22928 1.01862 0.96183 0.96363 0.85194 0.87987 0.91716 0.89036 0.98846 0.98015 0.92934 0.94014 0.92418 0.92140 0.91429 0.89554 0.91582 0.90183 0.91219 0.89870 0.90132 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.51 18.54 20.00 0.37 -17.14 16 2 C 0.25 7.66 15.43 89.44 1.38 9.04 16 3 C -0.06 -1.75 5.05 28.79 0.15 -1.61 16 4 C 0.07 2.38 4.91 86.30 0.42 2.81 16 5 N -0.54 -19.66 4.69 -900.81 -4.23 -23.89 16 6 C 0.20 9.32 4.53 85.56 0.39 9.71 16 7 C -0.52 -27.17 8.39 25.60 0.21 -26.96 16 8 H 0.06 3.12 7.38 -2.91 -0.02 3.10 16 9 C 0.01 0.49 5.46 84.65 0.46 0.95 16 10 N -0.93 -53.10 13.29 21.45 0.28 -52.81 16 11 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 C 0.05 1.46 4.74 86.30 0.41 1.87 16 16 C -0.10 -2.22 4.97 30.59 0.15 -2.06 16 17 C -0.11 -2.11 3.64 -10.27 -0.04 -2.15 16 18 C -0.14 -2.42 7.65 31.21 0.24 -2.18 16 19 C -0.14 -2.13 8.09 31.21 0.25 -1.88 16 20 C -0.14 -2.27 7.64 31.12 0.24 -2.03 16 21 H 0.13 2.97 6.34 -2.39 -0.02 2.96 16 22 H 0.10 3.44 6.28 -2.39 -0.02 3.42 16 23 H 0.06 2.41 6.98 -2.39 -0.02 2.39 16 24 H 0.09 2.45 6.40 -2.39 -0.02 2.44 16 25 H -0.01 -0.30 6.02 -2.38 -0.01 -0.31 16 26 H 0.00 0.09 7.91 -2.38 -0.02 0.07 16 27 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.04 1.10 6.06 -2.38 -0.01 1.09 16 29 H 0.06 1.80 7.92 -2.39 -0.02 1.78 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.47 6.25 -2.38 -0.01 1.46 16 32 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.38 7.92 -2.39 -0.02 1.36 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 38 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -59.67 308.58 3.75 -55.92 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.03 Total: 7.29 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.27 Total: -14.48 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -3.57 Total: -93.84 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -59.67 3.75 -55.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595394799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.885 kcal (2) G-P(sol) polarization free energy of solvation -59.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds