Wall clock time and date at job start Sun Mar 29 2020 22:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46774 * 2 1 4 4 C 1.52994 * 109.47040 * 240.00246 * 2 1 3 5 5 C 1.52999 * 109.47257 * 176.24627 * 4 2 1 6 6 C 1.47204 * 109.47464 * 185.00977 * 5 4 2 7 7 N 4.86393 * 126.49996 * 244.53284 * 2 1 3 8 8 N 1.46898 * 109.47368 * 120.00191 * 2 1 3 9 9 C 1.46848 * 111.00119 * 290.08875 * 8 2 1 10 10 C 1.53035 * 109.52503 * 185.83715 * 9 8 2 11 11 C 1.53124 * 109.31198 * 300.80193 * 10 9 8 12 12 C 1.53203 * 109.11548 * 57.63090 * 11 10 9 13 13 H 1.09007 * 109.48980 * 62.32091 * 12 11 10 14 14 C 1.50697 * 109.52250 * 182.40361 * 12 11 10 15 15 H 1.08001 * 120.00176 * 119.85269 * 14 12 11 16 16 C 1.37884 * 120.00448 * 299.84117 * 14 12 11 17 17 N 1.31523 * 119.99545 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00361 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46919 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47116 * 120.00177 * 18 16 14 21 21 H 1.48503 * 109.47165 * 240.00500 * 18 16 14 22 22 C 1.46846 * 110.99924 * 54.29574 * 8 2 1 23 23 H 1.09001 * 109.46774 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47129 * 299.99609 * 1 2 3 25 25 H 1.08994 * 109.47171 * 60.00078 * 1 2 3 26 26 H 1.09002 * 109.47636 * 296.24867 * 4 2 1 27 27 H 1.09001 * 109.47137 * 56.24933 * 4 2 1 28 28 H 1.09004 * 109.46991 * 305.00430 * 5 4 2 29 29 H 1.08996 * 109.47365 * 65.00429 * 5 4 2 30 30 H 1.08998 * 109.46063 * 65.82262 * 9 8 2 31 31 H 1.08997 * 109.45044 * 305.84969 * 9 8 2 32 32 H 1.09003 * 109.50311 * 60.75800 * 10 9 8 33 33 H 1.08997 * 109.50847 * 180.83955 * 10 9 8 34 34 H 1.08998 * 109.52358 * 177.57736 * 11 10 9 35 35 H 1.08996 * 109.52139 * 297.76749 * 11 10 9 36 36 H 0.96991 * 119.99475 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.46321 * 294.17758 * 22 8 2 38 38 H 1.09000 * 109.46293 * 54.14223 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5671 -0.6399 -1.2974 6 6 4.0503 -1.2276 -2.5576 7 7 4.4232 -1.6812 -3.5300 8 7 2.0198 -0.6925 1.1994 9 6 1.7513 0.0959 2.4088 10 6 2.4007 -0.5832 3.6167 11 6 1.8311 -1.9963 3.7701 12 6 2.0810 -2.7809 2.4782 13 1 3.1542 -2.8720 2.3098 14 6 1.4720 -4.1542 2.5972 15 1 0.7048 -4.4666 1.9042 16 6 1.8943 -5.0120 3.5907 17 7 2.8283 -4.6314 4.4349 18 14 1.1388 -6.7139 3.7387 19 1 0.1170 -6.8959 2.6766 20 1 2.1998 -7.7414 3.5854 21 1 0.4994 -6.8575 5.0713 22 6 1.4409 -2.0380 1.3034 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.7326 -1.7664 -1.2164 27 1 1.6228 -0.2476 -2.1379 28 1 3.8774 0.4035 -1.2407 29 1 3.9869 -1.1901 -0.4554 30 1 0.6749 0.1645 2.5660 31 1 2.1653 1.0970 2.2888 32 1 3.4788 -0.6398 3.4663 33 1 2.1887 -0.0058 4.5165 34 1 2.3225 -2.4986 4.6034 35 1 0.7593 -1.9384 3.9593 36 1 3.1251 -5.2347 5.1339 37 1 0.3659 -1.9594 1.4658 38 1 1.6293 -2.5868 0.3806 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:06 Heat of formation + Delta-G solvation = 8.059896 kcal Electronic energy + Delta-G solvation = -17230.139591 eV Core-core repulsion = 14685.723888 eV Total energy + Delta-G solvation = -2544.415703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.02948 -36.68138 -35.03615 -32.86151 -31.21808 -29.89340 -28.89593 -25.04757 -24.79228 -23.21578 -21.36021 -19.88718 -18.26147 -17.21287 -16.52365 -15.74795 -14.64722 -14.61774 -14.16065 -14.00339 -13.71390 -13.26930 -12.95757 -12.78216 -12.64699 -12.25377 -12.11905 -11.83708 -11.67723 -11.30708 -11.01762 -10.98447 -10.92292 -10.67388 -10.63934 -10.32716 -10.06221 -9.81430 -9.44975 -9.01849 -8.68425 -8.30461 -7.64852 -5.97869 -4.03601 2.90226 2.95228 3.29648 3.38206 3.41383 4.15046 4.35628 4.51017 4.99059 5.16292 5.30603 5.32713 5.47745 5.60514 5.65543 5.70267 5.80099 5.88790 6.00560 6.04065 6.17362 6.20662 6.28518 6.39496 6.46021 6.53809 6.72662 6.77996 6.99463 7.21801 7.40587 7.65234 7.72040 7.75569 7.82077 8.08360 8.17805 8.48426 9.00999 9.61042 11.08105 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.007283 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.647935 B = 3843.385666 C = 4507.270932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.080 3.920 3 H 0.078 0.922 4 C -0.106 4.106 5 C -0.022 4.022 6 C 0.214 3.786 7 N -0.458 5.458 8 N -0.532 5.532 9 C 0.063 3.937 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.054 3.946 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.062 3.938 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.025 0.975 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.028 0.972 36 H 0.259 0.741 37 H 0.023 0.977 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 11.099 -5.099 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.029 4.029 3 H 0.096 0.904 4 C -0.146 4.146 5 C -0.062 4.062 6 C -0.103 4.103 7 N -0.135 5.135 8 N -0.256 5.256 9 C -0.065 4.065 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.036 3.964 13 H 0.052 0.948 14 C -0.552 4.552 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.715 3.285 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.065 4.065 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.142 0.858 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.227 10.299 -6.447 12.213 hybrid contribution -1.504 -0.716 0.673 1.797 sum -2.731 9.583 -5.775 11.517 Atomic orbital electron populations 1.22451 0.97810 1.02721 1.01526 1.21668 0.92575 0.97780 0.90863 0.90354 1.21604 0.92837 1.02638 0.97477 1.19314 0.96813 1.01717 0.88326 1.29580 0.92926 0.93085 0.94750 1.81176 1.09650 1.10041 1.12669 1.62248 1.58688 1.03587 1.01068 1.22013 0.97755 0.95825 0.90903 1.21674 1.00587 0.98441 0.94826 1.21663 0.98198 0.92037 1.02985 1.18681 0.96682 0.92202 0.88878 0.94819 1.21191 1.21410 0.98630 1.14010 0.92892 1.24923 0.94971 0.98097 0.95803 1.69899 1.29329 1.35788 1.17673 0.86616 0.79191 0.84815 0.77842 1.19891 1.21076 1.21118 1.22380 0.96144 0.87051 1.00894 0.91775 0.92574 0.92775 0.90449 0.91480 0.87866 0.85803 0.95692 0.92469 0.92090 0.93709 0.89268 0.95289 0.93147 0.95830 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.19 8.45 37.16 0.31 -1.88 16 2 C 0.08 0.95 2.32 -67.71 -0.16 0.79 16 3 H 0.08 0.80 7.99 -51.93 -0.41 0.38 16 4 C -0.11 -1.16 4.54 -26.73 -0.12 -1.28 16 5 C -0.02 -0.23 5.52 -29.52 -0.16 -0.39 16 6 C 0.21 2.81 15.43 -20.76 -0.32 2.49 16 7 N -0.46 -7.33 18.54 42.15 0.78 -6.55 16 8 N -0.53 -8.15 4.10 -226.70 -0.93 -9.08 16 9 C 0.06 0.97 5.13 -3.83 -0.02 0.95 16 10 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 11 C -0.11 -2.48 5.03 -26.56 -0.13 -2.61 16 12 C 0.05 1.27 2.26 -91.65 -0.21 1.07 16 13 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 14 C -0.51 -13.59 8.56 -34.44 -0.29 -13.89 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 16 C 0.06 1.71 5.31 -17.81 -0.09 1.62 16 17 N -0.89 -24.81 11.36 55.43 0.63 -24.18 16 18 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.06 1.17 3.77 -3.84 -0.01 1.16 16 23 H 0.06 0.86 6.46 -51.93 -0.34 0.52 16 24 H 0.06 0.68 6.81 -51.93 -0.35 0.33 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.99 6.27 -51.93 -0.33 0.66 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.12 1.47 7.86 -51.93 -0.41 1.06 16 30 H 0.02 0.39 6.87 -51.93 -0.36 0.03 16 31 H 0.06 0.75 8.02 -51.93 -0.42 0.33 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 2.28 6.17 -51.93 -0.32 1.96 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.02 0.46 6.58 -51.93 -0.34 0.12 16 38 H 0.06 1.15 6.14 -51.93 -0.32 0.83 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -28.56 299.47 -7.49 -36.05 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.09 Total: -2.47 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -1.37 Total: -14.26 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.48 Total: -39.80 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.56 -7.49 -36.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.107 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds