Wall clock time and date at job start Sun Mar 29 2020 22:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46774 * 2 1 4 4 C 1.52994 * 109.47040 * 240.00246 * 2 1 3 5 5 C 1.52999 * 109.47257 * 176.24627 * 4 2 1 6 6 C 1.47204 * 109.47464 * 185.00977 * 5 4 2 7 7 N 4.86393 * 126.49996 * 244.53284 * 2 1 3 8 8 N 1.46898 * 109.47368 * 120.00191 * 2 1 3 9 9 C 1.46848 * 111.00119 * 290.08875 * 8 2 1 10 10 C 1.53035 * 109.52503 * 185.83715 * 9 8 2 11 11 C 1.53124 * 109.31198 * 300.80193 * 10 9 8 12 12 C 1.53203 * 109.11548 * 57.63090 * 11 10 9 13 13 H 1.09007 * 109.48980 * 62.32091 * 12 11 10 14 14 C 1.50697 * 109.52250 * 182.40361 * 12 11 10 15 15 H 1.08001 * 120.00176 * 119.85269 * 14 12 11 16 16 C 1.37884 * 120.00448 * 299.84117 * 14 12 11 17 17 N 1.31523 * 119.99545 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00361 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46919 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47116 * 120.00177 * 18 16 14 21 21 H 1.48503 * 109.47165 * 240.00500 * 18 16 14 22 22 C 1.46846 * 110.99924 * 54.29574 * 8 2 1 23 23 H 1.09001 * 109.46774 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47129 * 299.99609 * 1 2 3 25 25 H 1.08994 * 109.47171 * 60.00078 * 1 2 3 26 26 H 1.09002 * 109.47636 * 296.24867 * 4 2 1 27 27 H 1.09001 * 109.47137 * 56.24933 * 4 2 1 28 28 H 1.09004 * 109.46991 * 305.00430 * 5 4 2 29 29 H 1.08996 * 109.47365 * 65.00429 * 5 4 2 30 30 H 1.08998 * 109.46063 * 65.82262 * 9 8 2 31 31 H 1.08997 * 109.45044 * 305.84969 * 9 8 2 32 32 H 1.09003 * 109.50311 * 60.75800 * 10 9 8 33 33 H 1.08997 * 109.50847 * 180.83955 * 10 9 8 34 34 H 1.08998 * 109.52358 * 177.57736 * 11 10 9 35 35 H 1.08996 * 109.52139 * 297.76749 * 11 10 9 36 36 H 0.96991 * 119.99475 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.46321 * 294.17758 * 22 8 2 38 38 H 1.09000 * 109.46293 * 54.14223 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5671 -0.6399 -1.2974 6 6 4.0503 -1.2276 -2.5576 7 7 4.4232 -1.6812 -3.5300 8 7 2.0198 -0.6925 1.1994 9 6 1.7513 0.0959 2.4088 10 6 2.4007 -0.5832 3.6167 11 6 1.8311 -1.9963 3.7701 12 6 2.0810 -2.7809 2.4782 13 1 3.1542 -2.8720 2.3098 14 6 1.4720 -4.1542 2.5972 15 1 0.7048 -4.4666 1.9042 16 6 1.8943 -5.0120 3.5907 17 7 2.8283 -4.6314 4.4349 18 14 1.1388 -6.7139 3.7387 19 1 0.1170 -6.8959 2.6766 20 1 2.1998 -7.7414 3.5854 21 1 0.4994 -6.8575 5.0713 22 6 1.4409 -2.0380 1.3034 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.7326 -1.7664 -1.2164 27 1 1.6228 -0.2476 -2.1379 28 1 3.8774 0.4035 -1.2407 29 1 3.9869 -1.1901 -0.4554 30 1 0.6749 0.1645 2.5660 31 1 2.1653 1.0970 2.2888 32 1 3.4788 -0.6398 3.4663 33 1 2.1887 -0.0058 4.5165 34 1 2.3225 -2.4986 4.6034 35 1 0.7593 -1.9384 3.9593 36 1 3.1251 -5.2347 5.1339 37 1 0.3659 -1.9594 1.4658 38 1 1.6293 -2.5868 0.3806 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:06 Heat of formation + Delta-G solvation = -8.464952 kcal Electronic energy + Delta-G solvation = -17230.856162 eV Core-core repulsion = 14685.723888 eV Total energy + Delta-G solvation = -2545.132274 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29601 -37.82557 -36.44898 -34.55229 -32.48550 -31.56012 -30.06309 -26.89382 -25.86145 -24.55041 -22.96552 -21.14495 -19.72586 -18.39600 -18.15974 -17.14159 -16.38137 -15.78592 -15.40105 -15.21300 -14.97551 -14.68837 -14.38839 -14.19995 -13.93053 -13.60946 -13.46846 -13.11690 -12.84645 -12.79555 -12.64069 -12.47506 -12.39365 -11.96285 -11.79525 -11.64382 -11.48098 -11.43119 -11.20838 -10.72124 -10.50937 -10.31164 -8.90557 -8.04825 -6.17274 1.39295 1.42211 1.52010 1.86745 1.91686 2.44408 3.18632 3.22624 3.26223 4.07862 4.22646 4.31044 4.43896 4.48161 4.54133 4.66301 4.73828 4.81104 4.83027 4.90261 4.99241 5.03370 5.09188 5.16460 5.24545 5.28751 5.36675 5.40144 5.50653 5.57295 5.64323 5.70625 6.08877 6.24398 6.32334 6.56331 6.58264 6.70543 6.98045 7.50427 8.99479 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.007283 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.647935 B = 3843.385666 C = 4507.270932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.113 0.887 4 C -0.103 4.103 5 C -0.015 4.015 6 C 0.238 3.762 7 N -0.513 5.513 8 N -0.534 5.534 9 C 0.067 3.933 10 C -0.111 4.111 11 C -0.105 4.105 12 C 0.051 3.949 13 H 0.000 1.000 14 C -0.531 4.531 15 H 0.048 0.952 16 C 0.015 3.985 17 N -0.914 5.914 18 Si 0.945 3.055 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.281 1.281 22 C 0.081 3.919 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.142 0.858 29 H 0.111 0.889 30 H 0.025 0.975 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.017 0.983 36 H 0.258 0.742 37 H 0.015 0.985 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 13.198 -5.861 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.131 0.869 4 C -0.143 4.143 5 C -0.054 4.054 6 C -0.078 4.078 7 N -0.191 5.191 8 N -0.258 5.258 9 C -0.061 4.061 10 C -0.149 4.149 11 C -0.143 4.143 12 C 0.032 3.968 13 H 0.018 0.982 14 C -0.570 4.570 15 H 0.066 0.934 16 C -0.184 4.184 17 N -0.554 5.554 18 Si 0.771 3.229 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.046 4.046 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.160 0.840 29 H 0.129 0.871 30 H 0.043 0.957 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.886 12.409 -7.218 14.479 hybrid contribution -1.307 -1.354 0.933 2.100 sum -3.193 11.055 -6.285 13.111 Atomic orbital electron populations 1.22418 0.97592 1.01571 1.02662 1.21824 0.92737 0.98972 0.89032 0.86903 1.21582 0.93055 1.01421 0.98195 1.19458 0.96358 1.03453 0.86174 1.30055 0.91497 0.91693 0.94545 1.81201 1.11478 1.11891 1.14577 1.62168 1.58700 1.02251 1.02686 1.22014 0.97690 0.96960 0.89435 1.21581 1.00040 0.95852 0.97412 1.21470 0.97143 0.94745 1.00955 1.18620 0.94645 0.92037 0.91487 0.98184 1.21606 1.21245 1.00454 1.13714 0.93416 1.25644 0.95514 1.01479 0.95717 1.70036 1.30435 1.36809 1.18139 0.85707 0.78471 0.80796 0.77890 1.19342 1.20901 1.20707 1.21950 0.95121 0.89047 0.98525 0.94091 0.92788 0.90298 0.92879 0.89061 0.84021 0.87095 0.95689 0.88615 0.92784 0.91896 0.93031 0.96450 0.93251 0.96659 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 8.45 71.98 0.61 -3.13 16 2 C 0.08 1.63 2.32 44.91 0.10 1.73 16 3 H 0.11 1.59 7.99 -2.39 -0.02 1.57 16 4 C -0.10 -1.94 4.54 30.59 0.14 -1.80 16 5 C -0.01 -0.26 5.52 28.79 0.16 -0.10 16 6 C 0.24 5.87 15.43 89.44 1.38 7.25 16 7 N -0.51 -16.09 18.54 20.01 0.37 -15.72 16 8 N -0.53 -15.13 4.10 -871.14 -3.57 -18.69 16 9 C 0.07 1.84 5.13 86.33 0.44 2.28 16 10 C -0.11 -3.85 6.09 30.65 0.19 -3.66 16 11 C -0.10 -4.80 5.03 30.70 0.15 -4.65 16 12 C 0.05 2.46 2.26 -11.46 -0.03 2.43 16 13 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 14 C -0.53 -28.94 8.56 25.60 0.22 -28.72 16 15 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 16 C 0.02 0.83 5.31 84.65 0.45 1.28 16 17 N -0.91 -52.73 11.36 21.45 0.24 -52.49 16 18 Si 0.94 43.80 29.54 68.60 2.03 45.83 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 C 0.08 3.06 3.77 86.32 0.33 3.38 16 23 H 0.04 1.02 6.46 -2.39 -0.02 1.01 16 24 H 0.05 1.13 6.81 -2.38 -0.02 1.11 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.28 6.27 -2.39 -0.01 1.26 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.11 2.41 7.86 -2.39 -0.02 2.39 16 30 H 0.02 0.71 6.87 -2.39 -0.02 0.69 16 31 H 0.10 2.00 8.02 -2.39 -0.02 1.98 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 2.74 6.17 -2.39 -0.01 2.72 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.02 0.60 6.58 -2.38 -0.02 0.58 16 38 H 0.06 2.22 6.14 -2.39 -0.01 2.21 16 Total: -1.00 -64.66 299.47 4.24 -60.42 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.03 Total: 4.37 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.14 Total: -23.71 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.95 Total: -86.90 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -64.66 4.24 -60.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.957 kcal (2) G-P(sol) polarization free energy of solvation -64.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds