Wall clock time and date at job start Sun Mar 29 2020 22:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47221 * 2 1 4 4 C 1.53003 * 109.47267 * 120.00332 * 2 1 3 5 5 C 1.53003 * 109.47129 * 184.37122 * 4 2 1 6 6 C 1.47203 * 109.47266 * 176.55151 * 5 4 2 7 7 N 4.86539 * 126.51159 * 116.22700 * 2 1 3 8 8 N 1.46905 * 109.46979 * 239.99913 * 2 1 3 9 9 C 1.46845 * 110.99575 * 73.00049 * 8 2 1 10 10 C 1.53041 * 109.52539 * 174.16002 * 9 8 2 11 11 C 1.53119 * 109.27610 * 59.18086 * 10 9 8 12 12 C 1.53119 * 109.15978 * 302.34825 * 11 10 9 13 13 H 1.08997 * 109.50512 * 297.70941 * 12 11 10 14 14 C 1.50699 * 109.50399 * 177.59393 * 12 11 10 15 15 H 1.08001 * 120.00458 * 240.19463 * 14 12 11 16 16 C 1.37880 * 119.99999 * 60.19794 * 14 12 11 17 17 N 1.31513 * 119.99742 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00089 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47371 * 59.99887 * 18 16 14 20 20 H 1.48501 * 109.47295 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47366 * 300.00095 * 18 16 14 22 22 C 1.46845 * 111.00058 * 308.79718 * 8 2 1 23 23 H 1.08996 * 109.47221 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46658 * 299.99910 * 1 2 3 25 25 H 1.08997 * 109.47344 * 59.99590 * 1 2 3 26 26 H 1.09001 * 109.46995 * 64.37266 * 4 2 1 27 27 H 1.08992 * 109.46999 * 304.37350 * 4 2 1 28 28 H 1.09004 * 109.47182 * 296.55135 * 5 4 2 29 29 H 1.09000 * 109.46878 * 56.54785 * 5 4 2 30 30 H 1.09000 * 109.46727 * 294.17967 * 9 8 2 31 31 H 1.09000 * 109.46277 * 54.14748 * 9 8 2 32 32 H 1.09002 * 109.50030 * 299.24272 * 10 9 8 33 33 H 1.08998 * 109.53897 * 179.14299 * 10 9 8 34 34 H 1.08994 * 109.52273 * 182.44159 * 11 10 9 35 35 H 1.09004 * 109.52405 * 62.24815 * 11 10 9 36 36 H 0.97005 * 119.99562 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.45784 * 305.84828 * 22 8 2 38 38 H 1.08995 * 109.46747 * 65.82740 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5661 -0.6268 1.3054 6 6 4.0508 -1.2484 2.5485 7 7 4.4248 -1.7282 3.5079 8 7 2.0196 -0.6925 -1.1995 9 6 1.8171 0.1280 -2.4003 10 6 2.4671 -0.5579 -3.6041 11 6 1.8401 -1.9415 -3.7970 12 6 2.0223 -2.7588 -2.5151 13 1 3.0856 -2.9004 -2.3217 14 6 1.3563 -4.1011 -2.6753 15 1 0.5582 -4.3911 -2.0080 16 6 1.7659 -4.9591 -3.6739 17 7 2.7381 -4.6063 -4.4862 18 14 0.9398 -6.6227 -3.8730 19 1 -0.5081 -6.4277 -4.1390 20 1 1.5582 -7.3494 -5.0108 21 1 1.1122 -7.4132 -2.6277 22 6 1.3852 -2.0091 -1.3429 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.7421 -1.7691 1.2108 27 1 1.6141 -0.2548 2.1374 28 1 3.9941 -1.1467 0.4483 29 1 3.8663 0.4208 1.2819 30 1 0.7491 0.2470 -2.5831 31 1 2.2713 1.1077 -2.2516 32 1 3.5375 -0.6647 -3.4279 33 1 2.3038 0.0435 -4.4984 34 1 2.3301 -2.4510 -4.6266 35 1 0.7770 -1.8329 -4.0117 36 1 3.0260 -5.2098 -5.1889 37 1 1.5257 -2.5816 -0.4261 38 1 0.3193 -1.8801 -1.5307 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:08 Heat of formation + Delta-G solvation = 7.882958 kcal Electronic energy + Delta-G solvation = -17219.849231 eV Core-core repulsion = 14675.425855 eV Total energy + Delta-G solvation = -2544.423376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.01675 -36.68629 -35.03963 -32.85773 -31.23372 -29.88902 -28.88994 -25.01797 -24.82384 -23.19598 -21.37032 -19.87682 -18.26799 -17.21632 -16.51490 -15.73900 -14.65837 -14.61379 -14.16865 -14.01360 -13.68231 -13.26357 -12.96234 -12.76845 -12.65111 -12.23163 -12.13626 -11.83805 -11.69082 -11.30231 -11.01193 -10.96663 -10.90015 -10.67919 -10.66410 -10.34658 -10.07330 -9.81001 -9.44374 -9.01696 -8.69624 -8.29715 -7.64894 -5.97287 -4.03221 2.90155 2.95123 3.32230 3.37267 3.39642 4.15088 4.35517 4.51092 4.99165 5.17104 5.30067 5.33072 5.47657 5.60565 5.65625 5.70607 5.79923 5.88836 6.01155 6.04187 6.17535 6.21097 6.28477 6.39609 6.45724 6.53764 6.72674 6.77946 6.99686 7.21974 7.40808 7.65419 7.71925 7.75439 7.82242 8.08797 8.18148 8.48680 9.00881 9.61264 11.08596 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.007179 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.464509 B = 3899.108624 C = 4518.565320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.080 3.920 3 H 0.078 0.922 4 C -0.105 4.105 5 C -0.022 4.022 6 C 0.214 3.786 7 N -0.458 5.458 8 N -0.532 5.532 9 C 0.063 3.937 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.055 3.945 13 H 0.034 0.966 14 C -0.515 4.515 15 H 0.052 0.948 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.063 3.937 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.024 0.976 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.060 0.940 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 11.155 5.242 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.029 4.029 3 H 0.096 0.904 4 C -0.145 4.145 5 C -0.062 4.062 6 C -0.103 4.103 7 N -0.135 5.135 8 N -0.256 5.256 9 C -0.065 4.065 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.036 3.964 13 H 0.052 0.948 14 C -0.554 4.554 15 H 0.070 0.930 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.064 4.064 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.121 0.879 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.933 10.291 6.575 12.248 hybrid contribution -1.554 -0.644 -0.696 1.820 sum -2.487 9.647 5.879 11.568 Atomic orbital electron populations 1.22447 0.97747 1.02756 1.01491 1.21665 0.92617 0.97700 0.90927 0.90396 1.21587 0.92788 1.02628 0.97449 1.19319 0.96876 1.01117 0.88883 1.29571 0.92929 0.93163 0.94673 1.81175 1.09659 1.10078 1.12614 1.62238 1.57966 1.04026 1.01377 1.22015 0.97956 0.95503 0.91009 1.21674 1.00578 0.98400 0.94875 1.21650 0.97998 0.92334 1.02915 1.18657 0.96718 0.92079 0.88924 0.94829 1.21115 1.18891 1.00580 1.14825 0.93001 1.24915 0.94967 0.97989 0.95863 1.69877 1.27940 1.36296 1.18578 0.86730 0.79659 0.84407 0.77605 1.20416 1.21331 1.20339 1.22373 0.95700 0.87594 1.00737 0.91703 0.92787 0.92624 0.90505 0.91494 0.85777 0.87927 0.95743 0.92460 0.92088 0.93699 0.89269 0.95285 0.93028 0.92115 0.95787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 8.40 37.16 0.31 -1.88 16 2 C 0.08 0.95 2.30 -67.71 -0.16 0.79 16 3 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 4 C -0.11 -1.15 4.60 -26.73 -0.12 -1.27 16 5 C -0.02 -0.23 5.54 -29.52 -0.16 -0.39 16 6 C 0.21 2.80 15.43 -20.76 -0.32 2.48 16 7 N -0.46 -7.32 18.54 42.15 0.78 -6.54 16 8 N -0.53 -8.16 4.07 -226.69 -0.92 -9.08 16 9 C 0.06 0.97 5.18 -3.83 -0.02 0.95 16 10 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 11 C -0.11 -2.49 5.03 -26.61 -0.13 -2.62 16 12 C 0.05 1.29 2.26 -91.69 -0.21 1.09 16 13 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 14 C -0.52 -13.66 8.56 -34.44 -0.29 -13.96 16 15 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -24.83 11.36 55.43 0.63 -24.20 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.06 1.19 3.69 -3.83 -0.01 1.17 16 23 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 24 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.05 0.68 6.93 -51.93 -0.36 0.32 16 26 H 0.08 0.98 6.37 -51.93 -0.33 0.65 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.12 1.45 7.83 -51.93 -0.41 1.05 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.02 0.38 6.98 -51.93 -0.36 0.02 16 31 H 0.06 0.75 7.98 -51.93 -0.41 0.33 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 2.28 6.17 -51.93 -0.32 1.96 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.06 1.15 6.27 -51.93 -0.33 0.82 16 38 H 0.02 0.47 6.57 -51.93 -0.34 0.13 16 LS Contribution 299.74 15.07 4.52 4.52 Total: -1.00 -28.56 299.74 -7.50 -36.06 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.11 Total: -2.46 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -1.38 Total: -14.27 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.49 Total: -39.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.56 -7.50 -36.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.942 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds