Wall clock time and date at job start Sun Mar 29 2020 22:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47221 * 2 1 4 4 C 1.53003 * 109.47267 * 120.00332 * 2 1 3 5 5 C 1.53003 * 109.47129 * 184.37122 * 4 2 1 6 6 C 1.47203 * 109.47266 * 176.55151 * 5 4 2 7 7 N 4.86539 * 126.51159 * 116.22700 * 2 1 3 8 8 N 1.46905 * 109.46979 * 239.99913 * 2 1 3 9 9 C 1.46845 * 110.99575 * 73.00049 * 8 2 1 10 10 C 1.53041 * 109.52539 * 174.16002 * 9 8 2 11 11 C 1.53119 * 109.27610 * 59.18086 * 10 9 8 12 12 C 1.53119 * 109.15978 * 302.34825 * 11 10 9 13 13 H 1.08997 * 109.50512 * 297.70941 * 12 11 10 14 14 C 1.50699 * 109.50399 * 177.59393 * 12 11 10 15 15 H 1.08001 * 120.00458 * 240.19463 * 14 12 11 16 16 C 1.37880 * 119.99999 * 60.19794 * 14 12 11 17 17 N 1.31513 * 119.99742 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00089 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47371 * 59.99887 * 18 16 14 20 20 H 1.48501 * 109.47295 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47366 * 300.00095 * 18 16 14 22 22 C 1.46845 * 111.00058 * 308.79718 * 8 2 1 23 23 H 1.08996 * 109.47221 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46658 * 299.99910 * 1 2 3 25 25 H 1.08997 * 109.47344 * 59.99590 * 1 2 3 26 26 H 1.09001 * 109.46995 * 64.37266 * 4 2 1 27 27 H 1.08992 * 109.46999 * 304.37350 * 4 2 1 28 28 H 1.09004 * 109.47182 * 296.55135 * 5 4 2 29 29 H 1.09000 * 109.46878 * 56.54785 * 5 4 2 30 30 H 1.09000 * 109.46727 * 294.17967 * 9 8 2 31 31 H 1.09000 * 109.46277 * 54.14748 * 9 8 2 32 32 H 1.09002 * 109.50030 * 299.24272 * 10 9 8 33 33 H 1.08998 * 109.53897 * 179.14299 * 10 9 8 34 34 H 1.08994 * 109.52273 * 182.44159 * 11 10 9 35 35 H 1.09004 * 109.52405 * 62.24815 * 11 10 9 36 36 H 0.97005 * 119.99562 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.45784 * 305.84828 * 22 8 2 38 38 H 1.08995 * 109.46747 * 65.82740 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5661 -0.6268 1.3054 6 6 4.0508 -1.2484 2.5485 7 7 4.4248 -1.7282 3.5079 8 7 2.0196 -0.6925 -1.1995 9 6 1.8171 0.1280 -2.4003 10 6 2.4671 -0.5579 -3.6041 11 6 1.8401 -1.9415 -3.7970 12 6 2.0223 -2.7588 -2.5151 13 1 3.0856 -2.9004 -2.3217 14 6 1.3563 -4.1011 -2.6753 15 1 0.5582 -4.3911 -2.0080 16 6 1.7659 -4.9591 -3.6739 17 7 2.7381 -4.6063 -4.4862 18 14 0.9398 -6.6227 -3.8730 19 1 -0.5081 -6.4277 -4.1390 20 1 1.5582 -7.3494 -5.0108 21 1 1.1122 -7.4132 -2.6277 22 6 1.3852 -2.0091 -1.3429 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.7421 -1.7691 1.2108 27 1 1.6141 -0.2548 2.1374 28 1 3.9941 -1.1467 0.4483 29 1 3.8663 0.4208 1.2819 30 1 0.7491 0.2470 -2.5831 31 1 2.2713 1.1077 -2.2516 32 1 3.5375 -0.6647 -3.4279 33 1 2.3038 0.0435 -4.4984 34 1 2.3301 -2.4510 -4.6266 35 1 0.7770 -1.8329 -4.0117 36 1 3.0260 -5.2098 -5.1889 37 1 1.5257 -2.5816 -0.4261 38 1 0.3193 -1.8801 -1.5307 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:07 Heat of formation + Delta-G solvation = -8.649314 kcal Electronic energy + Delta-G solvation = -17220.566124 eV Core-core repulsion = 14675.425855 eV Total energy + Delta-G solvation = -2545.140269 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28644 -37.82696 -36.45058 -34.55144 -32.49183 -31.56816 -30.05374 -26.88891 -25.87055 -24.52898 -22.97943 -21.13026 -19.73863 -18.39361 -18.15526 -17.12750 -16.38873 -15.78725 -15.40263 -15.22617 -14.94784 -14.68596 -14.38304 -14.19403 -13.93501 -13.59507 -13.47272 -13.11043 -12.83412 -12.79506 -12.65350 -12.48593 -12.39859 -11.95640 -11.80316 -11.63743 -11.48301 -11.43758 -11.20883 -10.72523 -10.51521 -10.30840 -8.90769 -8.04441 -6.17161 1.41889 1.42295 1.49596 1.87014 1.92002 2.44596 3.19449 3.22815 3.25665 4.08083 4.23474 4.31162 4.44203 4.48260 4.54025 4.66467 4.73924 4.80690 4.83318 4.90687 4.99555 5.03513 5.08802 5.16282 5.24772 5.28692 5.37153 5.40202 5.50006 5.57054 5.64125 5.70412 6.08832 6.24537 6.32363 6.56162 6.58462 6.70866 6.97773 7.50420 8.99462 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.007179 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.464509 B = 3899.108624 C = 4518.565320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.113 0.887 4 C -0.102 4.102 5 C -0.015 4.015 6 C 0.238 3.762 7 N -0.514 5.514 8 N -0.534 5.534 9 C 0.067 3.933 10 C -0.111 4.111 11 C -0.105 4.105 12 C 0.051 3.949 13 H -0.001 1.001 14 C -0.534 4.534 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.914 5.914 18 Si 0.945 3.055 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.082 3.918 23 H 0.041 0.959 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.143 0.857 30 H 0.024 0.976 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.017 0.983 36 H 0.259 0.741 37 H 0.057 0.943 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.746 13.290 6.017 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.131 0.869 4 C -0.141 4.141 5 C -0.055 4.055 6 C -0.078 4.078 7 N -0.192 5.192 8 N -0.258 5.258 9 C -0.061 4.061 10 C -0.149 4.149 11 C -0.143 4.143 12 C 0.033 3.967 13 H 0.017 0.983 14 C -0.573 4.573 15 H 0.066 0.934 16 C -0.183 4.183 17 N -0.554 5.554 18 Si 0.771 3.229 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.046 4.046 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.130 0.870 29 H 0.160 0.840 30 H 0.043 0.957 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -1.571 12.435 7.360 14.535 hybrid contribution -1.364 -1.292 -0.958 2.109 sum -2.935 11.144 6.402 13.183 Atomic orbital electron populations 1.22414 0.97575 1.01595 1.02603 1.21821 0.92746 0.98929 0.89090 0.86902 1.21565 0.93084 1.01345 0.98155 1.19469 0.96340 1.02912 0.86744 1.30062 0.91491 0.91799 0.94437 1.81201 1.11505 1.11944 1.14555 1.62155 1.57855 1.02856 1.02977 1.22019 0.97980 0.96531 0.89556 1.21582 0.99896 0.95983 0.97427 1.21456 0.97084 0.94867 1.00906 1.18598 0.94615 0.92023 0.91509 0.98253 1.21554 1.18837 1.02323 1.14585 0.93403 1.25641 0.95625 1.01248 0.95790 1.70022 1.29103 1.37240 1.19004 0.85818 0.78919 0.80604 0.77538 1.19778 1.21055 1.19967 1.21939 0.94801 0.89468 0.98351 0.94029 0.90273 0.92919 0.93012 0.89055 0.87007 0.83982 0.95743 0.88542 0.92783 0.91865 0.93028 0.96454 0.93227 0.92485 0.96571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.40 71.98 0.60 -3.14 16 2 C 0.08 1.62 2.30 44.91 0.10 1.73 16 3 H 0.11 1.58 7.93 -2.39 -0.02 1.56 16 4 C -0.10 -1.92 4.60 30.60 0.14 -1.77 16 5 C -0.01 -0.26 5.54 28.79 0.16 -0.10 16 6 C 0.24 5.85 15.43 89.44 1.38 7.23 16 7 N -0.51 -16.11 18.54 20.01 0.37 -15.74 16 8 N -0.53 -15.17 4.07 -871.12 -3.55 -18.72 16 9 C 0.07 1.84 5.18 86.33 0.45 2.29 16 10 C -0.11 -3.85 6.09 30.65 0.19 -3.66 16 11 C -0.10 -4.81 5.03 30.67 0.15 -4.66 16 12 C 0.05 2.48 2.26 -11.49 -0.03 2.46 16 13 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 14 C -0.53 -29.15 8.56 25.60 0.22 -28.94 16 15 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 16 C 0.02 0.87 5.30 84.66 0.45 1.32 16 17 N -0.91 -52.79 11.36 21.45 0.24 -52.55 16 18 Si 0.94 43.79 29.54 68.60 2.03 45.82 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 C 0.08 3.10 3.69 86.33 0.32 3.42 16 23 H 0.04 1.04 6.44 -2.39 -0.02 1.03 16 24 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.05 1.12 6.93 -2.39 -0.02 1.10 16 26 H 0.05 1.25 6.37 -2.39 -0.02 1.23 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.11 2.39 7.83 -2.39 -0.02 2.37 16 29 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.02 0.69 6.98 -2.39 -0.02 0.67 16 31 H 0.10 2.00 7.98 -2.39 -0.02 1.98 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 2.74 6.17 -2.39 -0.01 2.72 16 35 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.26 14.33 8.31 -92.70 -0.77 13.55 16 37 H 0.06 2.17 6.27 -2.39 -0.01 2.16 16 38 H 0.02 0.63 6.57 -2.39 -0.02 0.62 16 Total: -1.00 -64.84 299.74 4.26 -60.58 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.03 Total: 4.44 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 4.14 Total: -23.83 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -2.93 Total: -87.00 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -64.84 4.26 -60.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.929 kcal (2) G-P(sol) polarization free energy of solvation -64.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds