Wall clock time and date at job start Sun Mar 29 2020 22:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46786 * 2 1 4 4 C 1.52997 * 109.47328 * 120.00010 * 2 1 3 5 5 C 1.53006 * 109.47127 * 184.99912 * 4 2 1 6 6 C 1.47201 * 109.47093 * 180.02562 * 5 4 2 7 7 N 4.86665 * 126.63946 * 118.15628 * 2 1 3 8 8 N 1.46898 * 109.47184 * 240.00498 * 2 1 3 9 9 C 1.46850 * 110.99928 * 306.04519 * 8 2 1 10 10 C 1.53035 * 109.52580 * 185.84299 * 9 8 2 11 11 C 1.53121 * 109.27580 * 300.81712 * 10 9 8 12 12 C 1.53118 * 109.16359 * 57.65340 * 11 10 9 13 13 H 1.09006 * 109.49991 * 62.28668 * 12 11 10 14 14 C 1.50692 * 109.50751 * 182.36548 * 12 11 10 15 15 H 1.08002 * 120.00360 * 120.00051 * 14 12 11 16 16 C 1.37881 * 119.99777 * 300.00157 * 14 12 11 17 17 N 1.31521 * 119.99773 * 179.97438 * 16 14 12 18 18 Si 1.86793 * 120.00179 * 359.97438 * 16 14 12 19 19 H 1.48508 * 109.47115 * 90.00040 * 18 16 14 20 20 H 1.48500 * 109.47069 * 209.99912 * 18 16 14 21 21 H 1.48500 * 109.47142 * 330.00068 * 18 16 14 22 22 C 1.46843 * 111.00360 * 70.25096 * 8 2 1 23 23 H 1.09001 * 109.46883 * 299.99387 * 1 2 3 24 24 H 1.08996 * 109.47303 * 60.00314 * 1 2 3 25 25 H 1.09002 * 109.46786 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 65.00233 * 4 2 1 27 27 H 1.08993 * 109.47194 * 304.99754 * 4 2 1 28 28 H 1.09001 * 109.46801 * 300.00272 * 5 4 2 29 29 H 1.09001 * 109.46998 * 59.99868 * 5 4 2 30 30 H 1.09003 * 109.46211 * 305.85340 * 9 8 2 31 31 H 1.08994 * 109.46560 * 65.82831 * 9 8 2 32 32 H 1.09003 * 109.50684 * 60.75482 * 10 9 8 33 33 H 1.09002 * 109.50410 * 180.83602 * 10 9 8 34 34 H 1.09004 * 109.52143 * 177.55894 * 11 10 9 35 35 H 1.08997 * 109.52198 * 297.68868 * 11 10 9 36 36 H 0.96995 * 120.00094 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.46274 * 294.17957 * 22 8 2 38 38 H 1.08998 * 109.46342 * 54.14780 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0557 -1.3077 2.5151 7 7 4.4343 -1.8427 3.4429 8 7 2.0197 -0.6924 -1.1995 9 6 1.4345 -2.0349 -1.3079 10 6 2.0744 -2.7784 -2.4825 11 6 1.8318 -1.9899 -3.7724 12 6 2.4079 -0.5799 -3.6156 13 1 3.4853 -0.6421 -3.4622 14 6 2.1221 0.2216 -4.8592 15 1 1.5379 1.1278 -4.7953 16 6 2.6064 -0.2018 -6.0787 17 7 2.3566 0.4976 -7.1642 18 14 3.6174 -1.7686 -6.1892 19 1 2.7152 -2.9242 -6.4262 20 1 4.5832 -1.6564 -7.3116 21 1 4.3574 -1.9710 -4.9177 22 6 1.7584 0.0998 -2.4080 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7517 -1.7715 1.2055 27 1 1.6055 -0.2617 2.1369 28 1 3.9995 -1.0727 0.4258 29 1 3.8533 0.4370 1.3572 30 1 1.6178 -2.5865 -0.3858 31 1 0.3605 -1.9507 -1.4733 32 1 3.1466 -2.8751 -2.3114 33 1 1.6293 -3.7694 -2.5718 34 1 2.3229 -2.4935 -4.6051 35 1 0.7608 -1.9274 -3.9651 36 1 2.6976 0.1999 -8.0221 37 1 0.6828 0.1740 -2.5681 38 1 2.1769 1.0987 -2.2850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:09 Heat of formation + Delta-G solvation = 15.886439 kcal Electronic energy + Delta-G solvation = -17214.029740 eV Core-core repulsion = 14669.953421 eV Total energy + Delta-G solvation = -2544.076319 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.25923 -36.88655 -35.33509 -32.71558 -31.68048 -30.30565 -29.23512 -25.18045 -24.90222 -23.39116 -21.70042 -19.76973 -18.59701 -17.37719 -16.77003 -16.14393 -15.10580 -14.58222 -14.33683 -14.05639 -13.92629 -13.56312 -13.17869 -13.00570 -12.66323 -12.54133 -12.24416 -12.21560 -11.92419 -11.60895 -11.18676 -11.15134 -11.08119 -10.97642 -10.53819 -10.38677 -10.06658 -9.93426 -9.68462 -9.09596 -8.92759 -8.51475 -7.82609 -6.07142 -4.06252 2.73373 2.77922 3.28514 3.40053 3.42601 3.97770 4.25686 4.42358 4.84738 5.00961 5.12090 5.24254 5.34581 5.42560 5.45723 5.55956 5.61634 5.73677 5.76241 5.85781 5.97434 6.04723 6.10749 6.13204 6.28173 6.30967 6.34256 6.51210 6.62003 6.80363 6.84052 7.20610 7.39586 7.54380 7.58712 7.64791 7.86201 8.51866 8.96297 9.55931 11.06166 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.031265 B = 0.006456 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.345050 B = 4335.991267 C = 4648.512687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.079 3.921 3 H 0.086 0.914 4 C -0.105 4.105 5 C -0.025 4.025 6 C 0.213 3.787 7 N -0.457 5.457 8 N -0.535 5.535 9 C 0.057 3.943 10 C -0.120 4.120 11 C -0.123 4.123 12 C 0.020 3.980 13 H 0.035 0.965 14 C -0.514 4.514 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.903 5.903 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.299 1.299 21 H -0.263 1.263 22 C 0.076 3.924 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.263 0.737 37 H 0.029 0.971 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 -2.526 13.549 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.030 4.030 3 H 0.104 0.896 4 C -0.144 4.144 5 C -0.065 4.065 6 C -0.104 4.104 7 N -0.134 5.134 8 N -0.259 5.259 9 C -0.071 4.071 10 C -0.158 4.158 11 C -0.160 4.160 12 C 0.001 3.999 13 H 0.053 0.947 14 C -0.552 4.552 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.541 5.541 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.188 1.188 22 C -0.050 4.050 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.141 0.859 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.894 -3.360 14.791 15.194 hybrid contribution -0.593 -0.583 -0.785 1.143 sum -1.487 -3.943 14.007 14.627 Atomic orbital electron populations 1.22451 0.97578 1.02241 1.02246 1.21687 0.92717 0.98400 0.90173 0.89558 1.21613 0.92857 1.02053 0.97912 1.19355 0.96758 1.00389 0.89959 1.29586 0.92966 0.93342 0.94544 1.81191 1.09600 1.10398 1.12256 1.62235 1.58096 1.02773 1.02801 1.22069 0.96576 0.90260 0.98212 1.21662 1.00865 0.97574 0.95720 1.22025 1.00969 0.98221 0.94798 1.19156 0.96241 0.91368 0.93124 0.94670 1.21005 1.34191 1.09896 0.90135 0.91014 1.24986 0.95611 0.96820 0.95684 1.69901 1.46083 1.39276 0.98861 0.86829 0.80174 0.83732 0.77399 1.20825 1.22721 1.18777 1.22087 0.98312 0.96247 0.88392 0.92555 0.91908 0.92362 0.91049 0.91218 0.85886 0.87535 0.91701 0.94901 0.91880 0.92994 0.93688 0.92662 0.92714 0.95296 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.97 8.44 37.16 0.31 -1.66 16 2 C 0.08 0.85 2.31 -67.71 -0.16 0.69 16 3 H 0.09 0.89 7.98 -51.93 -0.41 0.47 16 4 C -0.11 -0.92 4.57 -26.73 -0.12 -1.04 16 5 C -0.02 -0.21 5.59 -29.51 -0.16 -0.38 16 6 C 0.21 2.38 15.43 -20.76 -0.32 2.05 16 7 N -0.46 -6.45 18.54 42.15 0.78 -5.67 16 8 N -0.53 -7.53 4.06 -226.70 -0.92 -8.45 16 9 C 0.06 0.79 4.54 -3.83 -0.02 0.77 16 10 C -0.12 -1.95 6.09 -26.65 -0.16 -2.11 16 11 C -0.12 -2.50 4.73 -26.61 -0.13 -2.63 16 12 C 0.02 0.45 1.85 -91.69 -0.17 0.28 16 13 H 0.04 0.81 7.21 -51.93 -0.37 0.44 16 14 C -0.51 -13.80 9.15 -34.44 -0.32 -14.12 16 15 H 0.07 2.08 7.99 -52.49 -0.42 1.67 16 16 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 17 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 18 Si 0.89 21.60 24.35 -169.99 -4.14 17.47 16 19 H -0.28 -6.70 6.89 56.52 0.39 -6.31 16 20 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 22 C 0.08 1.37 4.36 -3.83 -0.02 1.35 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.76 6.82 -51.93 -0.35 0.41 16 25 H 0.06 0.62 6.46 -51.93 -0.34 0.29 16 26 H 0.07 0.66 6.23 -51.93 -0.32 0.33 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.12 1.16 7.75 -51.93 -0.40 0.76 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.77 6.13 -51.93 -0.32 0.45 16 31 H 0.03 0.47 6.58 -51.93 -0.34 0.12 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.99 3.34 -51.93 -0.17 0.82 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.03 0.54 6.88 -51.93 -0.36 0.18 16 38 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -30.18 292.49 -6.40 -36.58 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -5.95 Total: -3.05 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.35 Total: -14.91 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.64 Total: -40.50 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.47 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.18 -6.40 -36.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.464 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds