Wall clock time and date at job start Sun Mar 29 2020 22:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46786 * 2 1 4 4 C 1.52997 * 109.47328 * 120.00010 * 2 1 3 5 5 C 1.53006 * 109.47127 * 184.99912 * 4 2 1 6 6 C 1.47201 * 109.47093 * 180.02562 * 5 4 2 7 7 N 4.86665 * 126.63946 * 118.15628 * 2 1 3 8 8 N 1.46898 * 109.47184 * 240.00498 * 2 1 3 9 9 C 1.46850 * 110.99928 * 306.04519 * 8 2 1 10 10 C 1.53035 * 109.52580 * 185.84299 * 9 8 2 11 11 C 1.53121 * 109.27580 * 300.81712 * 10 9 8 12 12 C 1.53118 * 109.16359 * 57.65340 * 11 10 9 13 13 H 1.09006 * 109.49991 * 62.28668 * 12 11 10 14 14 C 1.50692 * 109.50751 * 182.36548 * 12 11 10 15 15 H 1.08002 * 120.00360 * 120.00051 * 14 12 11 16 16 C 1.37881 * 119.99777 * 300.00157 * 14 12 11 17 17 N 1.31521 * 119.99773 * 179.97438 * 16 14 12 18 18 Si 1.86793 * 120.00179 * 359.97438 * 16 14 12 19 19 H 1.48508 * 109.47115 * 90.00040 * 18 16 14 20 20 H 1.48500 * 109.47069 * 209.99912 * 18 16 14 21 21 H 1.48500 * 109.47142 * 330.00068 * 18 16 14 22 22 C 1.46843 * 111.00360 * 70.25096 * 8 2 1 23 23 H 1.09001 * 109.46883 * 299.99387 * 1 2 3 24 24 H 1.08996 * 109.47303 * 60.00314 * 1 2 3 25 25 H 1.09002 * 109.46786 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 65.00233 * 4 2 1 27 27 H 1.08993 * 109.47194 * 304.99754 * 4 2 1 28 28 H 1.09001 * 109.46801 * 300.00272 * 5 4 2 29 29 H 1.09001 * 109.46998 * 59.99868 * 5 4 2 30 30 H 1.09003 * 109.46211 * 305.85340 * 9 8 2 31 31 H 1.08994 * 109.46560 * 65.82831 * 9 8 2 32 32 H 1.09003 * 109.50684 * 60.75482 * 10 9 8 33 33 H 1.09002 * 109.50410 * 180.83602 * 10 9 8 34 34 H 1.09004 * 109.52143 * 177.55894 * 11 10 9 35 35 H 1.08997 * 109.52198 * 297.68868 * 11 10 9 36 36 H 0.96995 * 120.00094 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.46274 * 294.17957 * 22 8 2 38 38 H 1.08998 * 109.46342 * 54.14780 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0557 -1.3077 2.5151 7 7 4.4343 -1.8427 3.4429 8 7 2.0197 -0.6924 -1.1995 9 6 1.4345 -2.0349 -1.3079 10 6 2.0744 -2.7784 -2.4825 11 6 1.8318 -1.9899 -3.7724 12 6 2.4079 -0.5799 -3.6156 13 1 3.4853 -0.6421 -3.4622 14 6 2.1221 0.2216 -4.8592 15 1 1.5379 1.1278 -4.7953 16 6 2.6064 -0.2018 -6.0787 17 7 2.3566 0.4976 -7.1642 18 14 3.6174 -1.7686 -6.1892 19 1 2.7152 -2.9242 -6.4262 20 1 4.5832 -1.6564 -7.3116 21 1 4.3574 -1.9710 -4.9177 22 6 1.7584 0.0998 -2.4080 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7517 -1.7715 1.2055 27 1 1.6055 -0.2617 2.1369 28 1 3.9995 -1.0727 0.4258 29 1 3.8533 0.4370 1.3572 30 1 1.6178 -2.5865 -0.3858 31 1 0.3605 -1.9507 -1.4733 32 1 3.1466 -2.8751 -2.3114 33 1 1.6293 -3.7694 -2.5718 34 1 2.3229 -2.4935 -4.6051 35 1 0.7608 -1.9274 -3.9651 36 1 2.6976 0.1999 -8.0221 37 1 0.6828 0.1740 -2.5681 38 1 2.1769 1.0987 -2.2850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:09 Heat of formation + Delta-G solvation = -3.610567 kcal Electronic energy + Delta-G solvation = -17214.875193 eV Core-core repulsion = 14669.953421 eV Total energy + Delta-G solvation = -2544.921773 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.42441 -37.87027 -36.60411 -34.49655 -32.80271 -31.90461 -30.26369 -26.83868 -25.96011 -24.58930 -23.13155 -21.08798 -19.89304 -18.71394 -18.16783 -17.34624 -16.49135 -15.81460 -15.46341 -15.36513 -15.04024 -14.92675 -14.75271 -14.10874 -13.98712 -13.71891 -13.64567 -13.25648 -12.92614 -12.88589 -12.66756 -12.43550 -12.28217 -11.97788 -11.84738 -11.65019 -11.47966 -11.42714 -11.28441 -10.91403 -10.64680 -10.53100 -8.98266 -8.25377 -6.27718 1.34054 1.40168 1.50905 1.88859 1.93467 2.37181 3.11615 3.15041 3.19441 4.05386 4.11686 4.20958 4.26912 4.38286 4.45662 4.60054 4.63861 4.68068 4.76981 4.81626 4.92848 4.95274 5.02128 5.04826 5.10229 5.17859 5.27088 5.31462 5.36805 5.43260 5.49125 5.59065 5.72983 5.84524 6.27072 6.44045 6.49251 6.72191 6.81509 7.38228 8.91602 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.031265 B = 0.006456 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.345050 B = 4335.991267 C = 4648.512687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.094 0.906 4 C -0.097 4.097 5 C -0.019 4.019 6 C 0.240 3.760 7 N -0.513 5.513 8 N -0.532 5.532 9 C 0.057 3.943 10 C -0.116 4.116 11 C -0.123 4.123 12 C 0.019 3.981 13 H 0.029 0.971 14 C -0.514 4.514 15 H 0.033 0.967 16 C 0.011 3.989 17 N -0.954 5.954 18 Si 0.950 3.050 19 H -0.273 1.273 20 H -0.304 1.304 21 H -0.243 1.243 22 C 0.090 3.910 23 H 0.077 0.923 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.016 0.984 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 -3.866 15.893 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.028 4.028 3 H 0.112 0.888 4 C -0.136 4.136 5 C -0.059 4.059 6 C -0.076 4.076 7 N -0.191 5.191 8 N -0.256 5.256 9 C -0.070 4.070 10 C -0.154 4.154 11 C -0.161 4.161 12 C 0.000 4.000 13 H 0.047 0.953 14 C -0.553 4.553 15 H 0.051 0.949 16 C -0.185 4.185 17 N -0.595 5.595 18 Si 0.778 3.222 19 H -0.199 1.199 20 H -0.233 1.233 21 H -0.166 1.166 22 C -0.038 4.038 23 H 0.096 0.904 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.139 0.861 29 H 0.148 0.852 30 H 0.115 0.885 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.619 -4.704 17.173 17.816 hybrid contribution -0.760 -0.052 -1.518 1.699 sum -1.379 -4.756 15.655 16.419 Atomic orbital electron populations 1.22416 0.97316 1.02323 1.02196 1.21790 0.92921 0.98845 0.89288 0.88803 1.21544 0.92744 1.01953 0.97319 1.19488 0.96580 1.01395 0.88437 1.29958 0.91509 0.92009 0.94087 1.81231 1.11433 1.12322 1.14123 1.62176 1.58521 1.02737 1.02182 1.22120 0.96204 0.90016 0.98687 1.21640 1.01568 0.98201 0.93959 1.21925 0.99798 0.97473 0.96866 1.19088 0.96223 0.92180 0.92522 0.95284 1.21403 1.32477 1.08971 0.92426 0.94902 1.25834 0.97107 1.00225 0.95339 1.70057 1.48250 1.41586 0.99583 0.85818 0.78671 0.79828 0.77893 1.19925 1.23264 1.16619 1.21738 0.96940 0.96223 0.88922 0.90424 0.94167 0.92228 0.90981 0.89209 0.86130 0.85207 0.88486 0.95078 0.91549 0.90824 0.95306 0.93814 0.92787 0.96570 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 8.44 71.98 0.61 -2.75 16 2 C 0.08 1.43 2.31 44.92 0.10 1.53 16 3 H 0.09 1.59 7.98 -2.39 -0.02 1.57 16 4 C -0.10 -1.25 4.57 30.60 0.14 -1.11 16 5 C -0.02 -0.25 5.59 28.79 0.16 -0.09 16 6 C 0.24 4.65 15.43 89.44 1.38 6.03 16 7 N -0.51 -13.50 18.54 20.01 0.37 -13.13 16 8 N -0.53 -13.44 4.06 -871.14 -3.53 -16.98 16 9 C 0.06 1.38 4.54 86.32 0.39 1.78 16 10 C -0.12 -3.37 6.09 30.65 0.19 -3.18 16 11 C -0.12 -4.85 4.73 30.67 0.15 -4.70 16 12 C 0.02 0.83 1.85 -11.49 -0.02 0.81 16 13 H 0.03 1.30 7.21 -2.38 -0.02 1.29 16 14 C -0.51 -28.44 9.15 25.60 0.23 -28.20 16 15 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 16 C 0.01 0.65 5.45 84.65 0.46 1.12 16 17 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 18 Si 0.95 44.85 24.35 68.60 1.67 46.52 16 19 H -0.27 -12.40 6.89 99.48 0.69 -11.71 16 20 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 21 H -0.24 -10.52 6.53 99.48 0.65 -9.87 16 22 C 0.09 3.13 4.36 86.33 0.38 3.51 16 23 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 24 H 0.04 0.92 6.82 -2.39 -0.02 0.90 16 25 H 0.06 1.08 6.46 -2.39 -0.02 1.06 16 26 H 0.07 0.97 6.23 -2.39 -0.01 0.96 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.12 1.78 7.75 -2.39 -0.02 1.76 16 29 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.10 1.80 6.13 -2.39 -0.01 1.79 16 31 H 0.03 0.78 6.58 -2.39 -0.02 0.77 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.03 1.22 3.34 -2.38 -0.01 1.21 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.02 0.60 6.88 -2.39 -0.02 0.58 16 38 H 0.06 2.24 8.01 -2.39 -0.02 2.22 16 Total: -1.00 -67.93 292.49 3.93 -64.00 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 0.96 Total: 3.99 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 4.17 Total: -25.27 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -2.86 Total: -89.24 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.67 Total: 46.52 kcal Total: -67.93 3.93 -64.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.386 kcal (2) G-P(sol) polarization free energy of solvation -67.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds