Wall clock time and date at job start Sun Mar 29 2020 22:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08995 * 109.46973 * 2 1 4 4 C 1.53000 * 109.47204 * 240.00040 * 2 1 3 5 5 C 1.52994 * 109.46948 * 175.53337 * 4 2 1 6 6 C 1.47200 * 109.46831 * 185.00598 * 5 4 2 7 7 N 4.86392 * 126.44587 * 244.78677 * 2 1 3 8 8 N 1.46894 * 109.46893 * 119.99837 * 2 1 3 9 9 C 1.46848 * 111.00322 * 58.40309 * 8 2 1 10 10 C 1.53033 * 109.52591 * 174.15505 * 9 8 2 11 11 C 1.53126 * 109.27801 * 59.18340 * 10 9 8 12 12 C 1.53123 * 109.15800 * 302.34350 * 11 10 9 13 13 H 1.09000 * 109.50421 * 297.67557 * 12 11 10 14 14 C 1.50698 * 109.50198 * 177.59511 * 12 11 10 15 15 H 1.08006 * 119.99652 * 239.99938 * 14 12 11 16 16 C 1.37872 * 120.00252 * 60.00344 * 14 12 11 17 17 N 1.31515 * 120.00143 * 179.97438 * 16 14 12 18 18 Si 1.86803 * 119.99713 * 359.97438 * 16 14 12 19 19 H 1.48497 * 109.47165 * 270.00179 * 18 16 14 20 20 H 1.48497 * 109.46996 * 30.00747 * 18 16 14 21 21 H 1.48506 * 109.46790 * 150.00195 * 18 16 14 22 22 C 1.46853 * 111.00344 * 294.19167 * 8 2 1 23 23 H 1.08994 * 109.46728 * 299.99855 * 1 2 3 24 24 H 1.08998 * 109.46977 * 59.99845 * 1 2 3 25 25 H 1.08998 * 109.46565 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46699 * 295.53144 * 4 2 1 27 27 H 1.09003 * 109.47044 * 55.52991 * 4 2 1 28 28 H 1.09007 * 109.47004 * 304.99889 * 5 4 2 29 29 H 1.08999 * 109.47454 * 65.00064 * 5 4 2 30 30 H 1.09001 * 109.45990 * 54.14033 * 9 8 2 31 31 H 1.08996 * 109.46272 * 294.17644 * 9 8 2 32 32 H 1.09000 * 109.50791 * 299.24475 * 10 9 8 33 33 H 1.09001 * 109.50566 * 179.11852 * 10 9 8 34 34 H 1.08997 * 109.52565 * 182.44057 * 11 10 9 35 35 H 1.08996 * 109.52272 * 62.24741 * 11 10 9 36 36 H 0.97003 * 119.99972 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.45679 * 65.82450 * 22 8 2 38 38 H 1.08997 * 109.45742 * 305.85596 * 22 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5659 -0.6246 -1.3066 6 6 4.0477 -1.2128 -2.5671 7 7 4.4196 -1.6667 -3.5399 8 7 2.0197 -0.6924 1.1994 9 6 1.5179 -2.0715 1.2527 10 6 2.1616 -2.8048 2.4316 11 6 1.8232 -2.0683 3.7308 12 6 2.3135 -0.6212 3.6304 13 1 3.3975 -0.6113 3.5166 14 6 1.9321 0.1272 4.8815 15 1 1.2940 0.9962 4.8176 16 6 2.3978 -0.2974 6.1078 17 7 2.0653 0.3561 7.1997 18 14 3.5010 -1.8008 6.2184 19 1 2.6656 -3.0160 6.3931 20 1 4.2978 -1.9228 4.9713 21 1 4.4166 -1.6585 7.3789 22 6 1.6655 0.0489 2.4166 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.7436 -1.7694 -1.2100 27 1 1.6129 -0.2557 -2.1374 28 1 3.8659 0.4221 -1.2562 29 1 3.9963 -1.1669 -0.4647 30 1 1.7688 -2.5853 0.3247 31 1 0.4355 -2.0594 1.3797 32 1 3.2431 -2.8293 2.2984 33 1 1.7771 -3.8236 2.4803 34 1 2.3153 -2.5623 4.5684 35 1 0.7441 -2.0774 3.8842 36 1 2.3926 0.0571 8.0625 37 1 0.5823 0.0510 2.5381 38 1 2.0236 1.0750 2.3339 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:11 Heat of formation + Delta-G solvation = -3.129569 kcal Electronic energy + Delta-G solvation = -17216.181257 eV Core-core repulsion = 14671.280342 eV Total energy + Delta-G solvation = -2544.900915 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.43998 -37.87059 -36.60473 -34.48836 -32.81341 -31.89932 -30.25192 -26.86419 -25.94542 -24.59917 -23.11129 -21.11126 -19.87354 -18.70865 -18.16856 -17.37544 -16.48410 -15.80481 -15.46467 -15.35502 -15.05554 -14.93787 -14.74664 -14.12175 -13.98057 -13.70908 -13.64588 -13.28175 -12.90458 -12.86500 -12.69115 -12.41617 -12.28287 -11.98053 -11.84758 -11.66350 -11.48368 -11.41388 -11.27851 -10.91149 -10.63738 -10.52941 -8.97869 -8.25234 -6.27696 1.34362 1.40433 1.51244 1.88540 1.93140 2.37410 3.11775 3.14132 3.20084 4.04692 4.11612 4.20168 4.27123 4.38669 4.45782 4.59964 4.64076 4.67718 4.76737 4.81796 4.92049 4.95813 5.01594 5.05551 5.09904 5.17452 5.27665 5.31231 5.37111 5.43250 5.49781 5.59375 5.73042 5.84863 6.27129 6.43791 6.49530 6.71934 6.81536 7.38308 8.91744 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.006394 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.958389 B = 4378.178111 C = 4702.985484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.080 3.920 3 H 0.094 0.906 4 C -0.099 4.099 5 C -0.018 4.018 6 C 0.240 3.760 7 N -0.512 5.512 8 N -0.531 5.531 9 C 0.056 3.944 10 C -0.116 4.116 11 C -0.123 4.123 12 C 0.019 3.981 13 H 0.029 0.971 14 C -0.515 4.515 15 H 0.032 0.968 16 C 0.011 3.989 17 N -0.954 5.954 18 Si 0.951 3.049 19 H -0.273 1.273 20 H -0.242 1.242 21 H -0.305 1.305 22 C 0.089 3.911 23 H 0.040 0.960 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.017 0.983 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 -3.880 -15.902 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.028 4.028 3 H 0.112 0.888 4 C -0.137 4.137 5 C -0.058 4.058 6 C -0.076 4.076 7 N -0.191 5.191 8 N -0.256 5.256 9 C -0.072 4.072 10 C -0.154 4.154 11 C -0.161 4.161 12 C 0.000 4.000 13 H 0.047 0.953 14 C -0.553 4.553 15 H 0.050 0.950 16 C -0.185 4.185 17 N -0.595 5.595 18 Si 0.778 3.222 19 H -0.199 1.199 20 H -0.166 1.166 21 H -0.233 1.233 22 C -0.038 4.038 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.147 0.853 29 H 0.139 0.861 30 H 0.118 0.882 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.425 -4.566 -17.232 17.831 hybrid contribution -0.809 -0.108 1.503 1.710 sum -0.384 -4.674 -15.728 16.413 Atomic orbital electron populations 1.22423 0.97468 1.02250 1.02209 1.21800 0.92824 0.98920 0.89234 0.88781 1.21572 0.92808 1.02083 0.97283 1.19470 0.96562 1.03233 0.86504 1.29965 0.91497 0.91665 0.94463 1.81239 1.11402 1.12128 1.14299 1.62195 1.59303 1.02247 1.01806 1.22145 0.96773 0.89398 0.98855 1.21641 1.01457 0.98444 0.93810 1.21927 0.99738 0.97538 0.96879 1.19090 0.96342 0.92119 0.92461 0.95271 1.21408 1.29726 1.12402 0.91785 0.94961 1.25840 0.97504 0.99864 0.95331 1.70059 1.47758 1.42715 0.98970 0.85811 0.79038 0.79617 0.77698 1.19903 1.16557 1.23282 1.21738 0.96543 0.96738 0.88828 0.94110 0.90460 0.92370 0.90701 0.89361 0.85298 0.86056 0.88224 0.95202 0.91432 0.90794 0.95285 0.93853 0.92789 0.96497 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.44 8.50 71.99 0.61 -2.82 16 2 C 0.08 1.44 2.35 44.92 0.11 1.55 16 3 H 0.09 1.60 8.07 -2.39 -0.02 1.58 16 4 C -0.10 -1.26 4.47 30.59 0.14 -1.13 16 5 C -0.02 -0.23 5.52 28.79 0.16 -0.07 16 6 C 0.24 4.55 15.43 89.44 1.38 5.93 16 7 N -0.51 -13.31 18.54 20.01 0.37 -12.94 16 8 N -0.53 -13.37 4.16 -871.11 -3.62 -17.00 16 9 C 0.06 1.33 4.63 86.32 0.40 1.73 16 10 C -0.12 -3.33 6.09 30.65 0.19 -3.14 16 11 C -0.12 -4.84 4.73 30.68 0.15 -4.69 16 12 C 0.02 0.83 1.85 -11.49 -0.02 0.81 16 13 H 0.03 1.31 7.21 -2.39 -0.02 1.29 16 14 C -0.51 -28.49 9.15 25.60 0.23 -28.26 16 15 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 16 C 0.01 0.63 5.45 84.65 0.46 1.09 16 17 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 18 Si 0.95 44.79 24.35 68.60 1.67 46.46 16 19 H -0.27 -12.36 6.89 99.48 0.69 -11.67 16 20 H -0.24 -10.45 6.53 99.48 0.65 -9.80 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 22 C 0.09 3.13 4.27 86.33 0.37 3.50 16 23 H 0.04 0.95 6.67 -2.39 -0.02 0.93 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.08 6.51 -2.39 -0.02 1.06 16 26 H 0.07 0.97 6.10 -2.39 -0.01 0.96 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.13 1.19 8.14 -2.38 -0.02 1.18 16 29 H 0.12 1.68 7.88 -2.39 -0.02 1.66 16 30 H 0.10 1.79 5.97 -2.39 -0.01 1.78 16 31 H 0.03 0.75 6.61 -2.39 -0.02 0.73 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.03 1.22 3.34 -2.39 -0.01 1.21 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.02 0.63 6.75 -2.39 -0.02 0.61 16 38 H 0.06 2.21 8.07 -2.39 -0.02 2.19 16 Total: -1.00 -68.00 292.28 3.84 -64.16 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 0.96 Total: 4.01 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 4.17 Total: -25.51 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -2.95 Total: -89.13 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.46 kcal Total: -68.00 3.84 -64.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.032 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds