Wall clock time and date at job start Sun Mar 29 2020 21:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.46869 * 2 1 4 4 C 1.39203 * 119.99566 * 180.02562 * 3 2 1 5 5 N 1.32395 * 120.14175 * 359.97438 * 4 3 2 6 6 C 1.32445 * 120.00112 * 179.97438 * 5 4 3 7 7 C 1.37905 * 120.27597 * 0.02562 * 6 5 4 8 8 N 1.32449 * 120.27802 * 0.02562 * 7 6 5 9 9 C 1.32399 * 119.99523 * 359.97438 * 8 7 6 10 10 N 1.39206 * 120.13232 * 180.02562 * 9 8 7 11 11 C 1.46491 * 120.00262 * 359.97438 * 10 9 8 12 12 C 1.53001 * 109.47337 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47605 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99964 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00628 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99453 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00476 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47339 * 59.99446 * 17 15 13 19 19 H 1.48505 * 109.46910 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46680 * 299.99261 * 17 15 13 21 21 H 1.08997 * 109.47046 * 60.00009 * 1 2 3 22 22 H 1.08998 * 109.46726 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47084 * 299.99668 * 1 2 3 24 24 H 1.08999 * 109.46987 * 239.99597 * 2 1 3 25 25 H 1.09005 * 109.46889 * 119.99713 * 2 1 3 26 26 H 0.96992 * 119.99928 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.86433 * 180.02562 * 6 5 4 28 28 H 1.07997 * 119.85907 * 179.72329 * 7 6 5 29 29 H 0.97006 * 119.99730 * 179.97438 * 10 9 8 30 30 H 1.09000 * 109.47443 * 299.99348 * 11 10 9 31 31 H 1.09001 * 109.47336 * 59.99920 * 11 10 9 32 32 H 1.09005 * 109.46692 * 300.00162 * 12 11 10 33 33 H 1.09006 * 109.47470 * 59.99489 * 12 11 10 34 34 H 0.97004 * 119.99903 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3869 1.6356 -0.0005 5 7 4.2497 0.6314 -0.0005 6 6 5.5513 0.8765 -0.0016 7 6 6.0141 2.1756 -0.0021 8 7 5.1607 3.1885 -0.0011 9 6 3.8573 2.9559 -0.0001 10 7 2.9579 4.0184 0.0005 11 6 3.4528 5.3972 0.0005 12 6 2.2675 6.3646 0.0017 13 6 2.7765 7.7829 0.0011 14 1 3.8393 7.9752 0.0003 15 6 1.8857 8.8352 0.0026 16 7 0.5915 8.6011 0.0041 17 14 2.5167 10.5934 0.0025 18 1 3.3415 10.8233 -1.2108 19 1 1.3662 11.5323 0.0036 20 1 3.3442 10.8222 1.2142 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.3880 2.1184 -0.0004 27 1 6.2531 0.0557 -0.0020 28 1 7.0768 2.3678 0.0016 29 1 2.0033 3.8457 0.0008 30 1 4.0595 5.5655 0.8903 31 1 4.0588 5.5657 -0.8897 32 1 1.6603 6.1964 -0.8878 33 1 1.6617 6.1960 0.8922 34 1 -0.0354 9.3414 0.0047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596190914.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:24 Heat of formation + Delta-G solvation = 45.707493 kcal Electronic energy + Delta-G solvation = -16024.832336 eV Core-core repulsion = 13378.508811 eV Total energy + Delta-G solvation = -2646.323524 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.67739 -36.51250 -36.07476 -33.43218 -32.79220 -31.27695 -29.29454 -28.01626 -25.13194 -23.68535 -22.70551 -22.00388 -20.91013 -17.91514 -17.19904 -17.10455 -16.06522 -15.39784 -14.94896 -14.65022 -14.53029 -14.38332 -13.69406 -13.55692 -13.08530 -12.37041 -12.24731 -11.97638 -11.88943 -11.33135 -11.24021 -10.98360 -10.90666 -10.62779 -10.57470 -9.96046 -9.60714 -9.33636 -8.69844 -8.68894 -8.41545 -6.82469 -6.09460 -4.12108 1.46885 1.70425 3.20408 3.30961 3.34761 3.37363 3.59166 4.21708 4.41308 4.61489 4.75176 4.97945 5.04195 5.14736 5.27651 5.31900 5.55182 5.60170 5.73045 5.87137 5.95134 6.30279 6.40909 6.44326 6.79308 7.06985 7.15971 7.40154 7.57818 7.62669 7.78885 7.91010 8.12083 8.28338 8.51357 8.93555 9.52556 11.02242 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.005174 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.758721 B = 5410.480523 C = 6372.187687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.135 3.865 3 N -0.726 5.726 4 C 0.304 3.696 5 N -0.477 5.477 6 C 0.004 3.996 7 C 0.037 3.963 8 N -0.480 5.480 9 C 0.331 3.669 10 N -0.711 5.711 11 C 0.137 3.863 12 C 0.012 3.988 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.404 0.596 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.400 0.600 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -16.108 -0.007 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.010 3.990 3 N -0.367 5.367 4 C 0.057 3.943 5 N -0.200 5.200 6 C -0.152 4.152 7 C -0.121 4.121 8 N -0.203 5.203 9 C 0.083 3.917 10 N -0.346 5.346 11 C 0.014 3.986 12 C -0.026 4.026 13 C -0.559 4.559 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.241 0.759 27 H 0.174 0.826 28 H 0.175 0.825 29 H 0.236 0.764 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.923 -16.043 -0.005 16.307 hybrid contribution -0.288 1.189 0.000 1.224 sum 2.635 -14.853 -0.004 15.085 Atomic orbital electron populations 1.22029 0.94982 1.02872 1.02661 1.21101 0.93390 0.82834 1.01628 1.44327 1.01629 1.08005 1.82693 1.18785 0.86767 0.88650 1.00116 1.67716 1.03090 1.32693 1.16472 1.22820 0.91089 0.97206 1.04119 1.22999 0.99705 0.88897 1.00479 1.67954 1.00222 1.35022 1.17124 1.19030 0.89466 0.86350 0.96859 1.44961 1.06119 1.04642 1.78866 1.21630 0.98826 0.77652 1.00492 1.19325 0.92432 0.93189 0.97649 1.20998 0.93179 0.90355 1.51343 0.92278 1.24996 0.94822 0.99459 0.94999 1.69949 1.01106 1.31955 1.50388 0.86569 0.78266 0.83906 0.78779 1.20107 1.21256 1.20104 0.91975 0.91004 0.91980 0.92250 0.92248 0.75894 0.82610 0.82478 0.76442 0.92854 0.92845 0.96115 0.96110 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.03 37.16 0.37 -0.99 16 2 C 0.13 1.44 6.44 -4.04 -0.03 1.41 16 3 N -0.73 -9.39 5.70 -60.07 -0.34 -9.74 16 4 C 0.30 4.80 7.52 -154.44 -1.16 3.64 16 5 N -0.48 -7.29 9.73 -12.06 -0.12 -7.40 16 6 C 0.00 0.06 11.20 -17.41 -0.19 -0.14 16 7 C 0.04 0.52 11.20 -17.41 -0.19 0.33 16 8 N -0.48 -8.56 9.73 -12.05 -0.12 -8.68 16 9 C 0.33 5.82 7.52 -154.43 -1.16 4.66 16 10 N -0.71 -12.79 5.70 -60.08 -0.34 -13.13 16 11 C 0.14 2.90 5.66 -4.05 -0.02 2.88 16 12 C 0.01 0.29 5.09 -27.89 -0.14 0.14 16 13 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 17 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.40 4.80 6.66 -40.82 -0.27 4.53 16 27 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.40 6.40 6.66 -40.82 -0.27 6.13 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 292.99 15.07 4.42 4.42 Total: -1.00 -31.25 292.99 -8.46 -39.71 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.74 Total: 5.14 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.94 Total: -1.23 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: -0.18 Total: -64.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.25 -8.46 -39.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596190914.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.421 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds