Wall clock time and date at job start Sun Mar 29 2020 21:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.46869 * 2 1 4 4 C 1.39203 * 119.99566 * 180.02562 * 3 2 1 5 5 N 1.32395 * 120.14175 * 359.97438 * 4 3 2 6 6 C 1.32445 * 120.00112 * 179.97438 * 5 4 3 7 7 C 1.37905 * 120.27597 * 0.02562 * 6 5 4 8 8 N 1.32449 * 120.27802 * 0.02562 * 7 6 5 9 9 C 1.32399 * 119.99523 * 359.97438 * 8 7 6 10 10 N 1.39206 * 120.13232 * 180.02562 * 9 8 7 11 11 C 1.46491 * 120.00262 * 359.97438 * 10 9 8 12 12 C 1.53001 * 109.47337 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47605 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99964 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00628 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99453 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00476 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47339 * 59.99446 * 17 15 13 19 19 H 1.48505 * 109.46910 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46680 * 299.99261 * 17 15 13 21 21 H 1.08997 * 109.47046 * 60.00009 * 1 2 3 22 22 H 1.08998 * 109.46726 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47084 * 299.99668 * 1 2 3 24 24 H 1.08999 * 109.46987 * 239.99597 * 2 1 3 25 25 H 1.09005 * 109.46889 * 119.99713 * 2 1 3 26 26 H 0.96992 * 119.99928 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.86433 * 180.02562 * 6 5 4 28 28 H 1.07997 * 119.85907 * 179.72329 * 7 6 5 29 29 H 0.97006 * 119.99730 * 179.97438 * 10 9 8 30 30 H 1.09000 * 109.47443 * 299.99348 * 11 10 9 31 31 H 1.09001 * 109.47336 * 59.99920 * 11 10 9 32 32 H 1.09005 * 109.46692 * 300.00162 * 12 11 10 33 33 H 1.09006 * 109.47470 * 59.99489 * 12 11 10 34 34 H 0.97004 * 119.99903 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3869 1.6356 -0.0005 5 7 4.2497 0.6314 -0.0005 6 6 5.5513 0.8765 -0.0016 7 6 6.0141 2.1756 -0.0021 8 7 5.1607 3.1885 -0.0011 9 6 3.8573 2.9559 -0.0001 10 7 2.9579 4.0184 0.0005 11 6 3.4528 5.3972 0.0005 12 6 2.2675 6.3646 0.0017 13 6 2.7765 7.7829 0.0011 14 1 3.8393 7.9752 0.0003 15 6 1.8857 8.8352 0.0026 16 7 0.5915 8.6011 0.0041 17 14 2.5167 10.5934 0.0025 18 1 3.3415 10.8233 -1.2108 19 1 1.3662 11.5323 0.0036 20 1 3.3442 10.8222 1.2142 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.3880 2.1184 -0.0004 27 1 6.2531 0.0557 -0.0020 28 1 7.0768 2.3678 0.0016 29 1 2.0033 3.8457 0.0008 30 1 4.0595 5.5655 0.8903 31 1 4.0588 5.5657 -0.8897 32 1 1.6603 6.1964 -0.8878 33 1 1.6617 6.1960 0.8922 34 1 -0.0354 9.3414 0.0047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596190914.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:23 Heat of formation + Delta-G solvation = 24.988786 kcal Electronic energy + Delta-G solvation = -16025.730766 eV Core-core repulsion = 13378.508811 eV Total energy + Delta-G solvation = -2647.221955 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.86835 -37.66634 -37.43057 -35.26558 -34.10432 -32.68203 -30.74122 -29.22894 -26.85487 -24.96695 -23.96744 -23.05854 -22.65608 -19.17013 -18.75882 -18.28681 -17.83027 -16.53768 -16.51210 -15.98162 -15.73292 -15.60003 -15.18015 -15.04800 -14.32514 -14.06309 -13.21270 -13.13888 -13.09660 -12.82475 -12.68873 -12.52223 -12.50698 -12.20147 -11.90987 -11.55325 -11.42504 -11.37667 -10.58054 -9.92756 -9.90931 -8.23577 -8.03751 -6.34044 0.31168 0.48894 1.41961 1.44557 1.52430 2.16548 2.22089 2.44826 3.03729 3.11215 3.53615 3.59577 4.00280 4.19504 4.28918 4.45271 4.54032 4.57286 4.58270 4.61370 4.90652 4.97318 5.10495 5.25265 5.32277 5.45404 5.60209 5.72612 5.93673 6.03064 6.16775 6.27014 6.55116 6.79221 6.96792 7.28428 7.35368 8.88320 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.005174 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.758721 B = 5410.480523 C = 6372.187687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 N -0.723 5.723 4 C 0.301 3.699 5 N -0.488 5.488 6 C 0.022 3.978 7 C 0.024 3.976 8 N -0.507 5.507 9 C 0.301 3.699 10 N -0.716 5.716 11 C 0.164 3.836 12 C 0.022 3.978 13 C -0.544 4.544 14 H 0.060 0.940 15 C 0.006 3.994 16 N -0.928 5.928 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.268 1.268 21 H 0.062 0.938 22 H 0.090 0.910 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.407 0.593 27 H 0.198 0.802 28 H 0.190 0.810 29 H 0.406 0.594 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -17.009 -0.007 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 N -0.363 5.363 4 C 0.054 3.946 5 N -0.211 5.211 6 C -0.136 4.136 7 C -0.133 4.133 8 N -0.231 5.231 9 C 0.055 3.945 10 N -0.353 5.353 11 C 0.040 3.960 12 C -0.016 4.016 13 C -0.583 4.583 14 H 0.079 0.921 15 C -0.192 4.192 16 N -0.568 5.568 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.193 1.193 21 H 0.081 0.919 22 H 0.109 0.891 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.244 0.756 27 H 0.215 0.785 28 H 0.207 0.793 29 H 0.243 0.757 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.868 -16.987 -0.005 17.422 hybrid contribution -0.506 1.303 0.000 1.397 sum 3.362 -15.684 -0.005 16.041 Atomic orbital electron populations 1.21992 0.92953 1.04152 1.02698 1.21219 0.95016 0.81432 1.01237 1.44513 1.00821 1.09158 1.81781 1.18868 0.87920 0.88047 0.99777 1.67861 1.03920 1.32345 1.17011 1.23541 0.91039 0.98201 1.00781 1.23581 1.00780 0.88684 1.00245 1.67894 1.00875 1.37131 1.17205 1.19108 0.89532 0.86723 0.99115 1.44585 1.06616 1.03508 1.80589 1.21021 0.96703 0.78934 0.99310 1.19135 0.93190 0.93405 0.95856 1.21428 0.93478 0.91930 1.51449 0.92142 1.25891 0.94972 1.03956 0.94401 1.70065 1.02293 1.33349 1.51094 0.85487 0.77881 0.78441 0.79177 1.19268 1.20668 1.19261 0.91925 0.89078 0.91931 0.92561 0.92560 0.75582 0.78515 0.79292 0.75713 0.93999 0.93988 0.97810 0.97806 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 10.03 71.98 0.72 -1.64 16 2 C 0.13 2.71 6.44 86.38 0.56 3.27 16 3 N -0.72 -18.33 5.70 -343.97 -1.96 -20.29 16 4 C 0.30 9.26 7.52 133.25 1.00 10.26 16 5 N -0.49 -14.02 9.73 -192.06 -1.87 -15.89 16 6 C 0.02 0.52 11.20 84.52 0.95 1.47 16 7 C 0.02 0.65 11.20 84.52 0.95 1.60 16 8 N -0.51 -17.86 9.73 -192.05 -1.87 -19.72 16 9 C 0.30 10.61 7.52 133.25 1.00 11.61 16 10 N -0.72 -26.40 5.70 -344.00 -1.96 -28.36 16 11 C 0.16 7.20 5.66 86.38 0.49 7.69 16 12 C 0.02 1.11 5.09 29.85 0.15 1.27 16 13 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.01 0.36 5.46 84.65 0.46 0.82 16 16 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 17 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.41 9.66 6.66 -92.71 -0.62 9.04 16 27 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.19 3.58 8.06 -2.91 -0.02 3.56 16 29 H 0.41 13.47 6.66 -92.70 -0.62 12.85 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 33 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 34 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -67.04 292.99 1.03 -66.00 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -0.13 Total: 21.25 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.51 Total: 5.91 kcal Atomic # 7 Polarization: -131.54 SS G_CDS: -7.37 Total: -138.92 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.04 1.03 -66.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596190914.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.993 kcal (2) G-P(sol) polarization free energy of solvation -67.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds