Wall clock time and date at job start Sun Mar 29 2020 21:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40427 * 126.82560 * 2 1 4 4 C 1.30584 * 106.99392 * 179.82639 * 3 2 1 5 5 N 1.33367 * 109.11554 * 0.44228 * 4 3 2 6 6 C 1.31574 * 109.69553 * 359.71198 * 5 4 3 7 7 N 1.38327 * 126.07798 * 179.97438 * 6 5 4 8 8 C 1.46848 * 111.00076 * 296.90472 * 7 6 5 9 9 C 1.53041 * 109.52306 * 185.84054 * 8 7 6 10 10 C 1.53127 * 109.27327 * 300.81557 * 9 8 7 11 11 C 1.53110 * 109.15907 * 57.65863 * 10 9 8 12 12 H 1.08997 * 109.50755 * 62.32332 * 11 10 9 13 13 C 1.50705 * 109.50470 * 182.40327 * 11 10 9 14 14 H 1.07997 * 120.00136 * 119.99884 * 13 11 10 15 15 C 1.37877 * 119.99576 * 299.99948 * 13 11 10 16 16 N 1.31519 * 120.00189 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99727 * 179.97438 * 15 13 11 18 18 H 1.48488 * 109.47251 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46473 * 120.00517 * 17 15 13 20 20 H 1.48500 * 109.47195 * 239.99769 * 17 15 13 21 21 C 1.46853 * 110.99696 * 61.10974 * 7 6 5 22 22 H 1.08998 * 109.47306 * 264.26900 * 1 2 3 23 23 H 1.09001 * 109.46750 * 144.26925 * 1 2 3 24 24 H 1.09000 * 109.47366 * 24.27207 * 1 2 3 25 25 H 1.08009 * 125.44063 * 180.15368 * 4 3 2 26 26 H 1.09000 * 109.45911 * 305.84723 * 8 7 6 27 27 H 1.08991 * 109.46670 * 65.82881 * 8 7 6 28 28 H 1.08995 * 109.50445 * 60.75401 * 9 8 7 29 29 H 1.09000 * 109.50250 * 180.88109 * 9 8 7 30 30 H 1.08998 * 109.51950 * 177.56284 * 10 9 8 31 31 H 1.09000 * 109.52232 * 297.75351 * 10 9 8 32 32 H 0.96996 * 119.99899 * 179.97438 * 16 15 13 33 33 H 1.08991 * 109.46290 * 294.17905 * 21 7 6 34 34 H 1.09002 * 109.45833 * 54.14853 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1241 0.0000 4 6 3.5351 0.6811 0.0038 5 7 3.5184 -0.6525 -0.0036 6 6 2.2742 -1.0804 -0.0059 7 7 1.8676 -2.4026 -0.0137 8 6 2.3056 -3.0807 -1.2404 9 6 1.7169 -4.4927 -1.2823 10 6 2.1855 -5.2725 -0.0506 11 6 1.7586 -4.5202 1.2128 12 1 0.6709 -4.4618 1.2516 13 6 2.2671 -5.2503 2.4292 14 1 2.9394 -4.7554 3.1143 15 6 1.8739 -6.5502 2.6673 16 7 1.0548 -7.1528 1.8332 17 14 2.5047 -7.4555 4.1746 18 1 3.4052 -6.5629 4.9474 19 1 1.3568 -7.8579 5.0266 20 1 3.2527 -8.6655 3.7484 21 6 2.3461 -3.1073 1.1824 22 1 -0.3634 -0.1026 1.0225 23 1 -0.3633 -0.8343 -0.6001 24 1 -0.3634 0.9368 -0.4224 25 1 4.4227 1.2964 0.0072 26 1 1.9623 -2.5182 -2.1086 27 1 3.3938 -3.1405 -1.2535 28 1 0.6285 -4.4333 -1.2830 29 1 2.0549 -5.0012 -2.1852 30 1 1.7338 -6.2645 -0.0540 31 1 3.2713 -5.3655 -0.0698 32 1 0.7785 -8.0674 2.0005 33 1 3.4341 -3.1669 1.1579 34 1 2.0322 -2.5642 2.0738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596325838.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:59 Heat of formation + Delta-G solvation = 94.550033 kcal Electronic energy + Delta-G solvation = -17054.927432 eV Core-core repulsion = 14410.721879 eV Total energy + Delta-G solvation = -2644.205553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.85752 -38.23530 -34.00364 -33.67538 -31.97818 -30.06621 -29.55679 -27.00945 -25.05055 -23.72708 -21.80473 -21.61513 -20.34235 -18.62013 -17.27108 -16.20263 -15.82982 -15.46307 -14.57101 -14.47424 -14.06203 -13.49522 -13.13279 -13.02627 -12.80101 -12.59879 -12.46389 -11.93377 -11.57710 -10.99705 -10.83514 -10.73355 -10.20966 -9.97436 -9.86310 -9.64316 -9.52189 -9.33982 -9.16460 -8.79970 -8.45598 -8.26417 -6.03542 -4.09645 1.76588 2.37504 3.10437 3.28036 3.36439 3.40759 4.02428 4.42536 4.73304 4.80314 5.27060 5.29265 5.39133 5.49749 5.59355 5.70968 5.90182 6.04615 6.29454 6.35633 6.42570 6.50119 6.57354 6.65828 6.69056 6.83465 7.02091 7.27962 7.37578 7.66375 7.71355 7.96685 8.07920 8.32424 8.38739 8.93683 9.55258 11.02681 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.035610 B = 0.006606 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.106091 B = 4237.322249 C = 4479.432625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.370 5.370 3 N -0.329 5.329 4 C 0.200 3.800 5 N -0.565 5.565 6 C 0.458 3.542 7 N -0.475 5.475 8 C 0.075 3.925 9 C -0.117 4.117 10 C -0.114 4.114 11 C 0.057 3.943 12 H 0.036 0.964 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.081 3.919 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.213 0.787 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.036 0.964 32 H 0.260 0.740 33 H 0.043 0.957 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 9.928 -5.598 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.161 5.161 3 N -0.159 5.159 4 C -0.104 4.104 5 N -0.297 5.297 6 C 0.094 3.906 7 N -0.202 5.202 8 C -0.052 4.052 9 C -0.155 4.155 10 C -0.152 4.152 11 C 0.038 3.962 12 H 0.054 0.946 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.045 4.045 22 H 0.097 0.903 23 H 0.114 0.886 24 H 0.104 0.896 25 H 0.230 0.770 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.111 10.299 -5.614 11.782 hybrid contribution 0.948 -0.560 0.831 1.379 sum -0.163 9.739 -4.783 10.851 Atomic orbital electron populations 1.21867 0.73639 1.04247 1.03978 1.50226 1.07925 1.03519 1.54442 1.77952 1.02184 1.07633 1.28110 1.25728 0.95636 0.90693 0.98319 1.71088 1.20032 1.11544 1.26999 1.22192 0.84456 0.89646 0.94351 1.59270 1.59194 0.95148 1.06588 1.22091 0.98797 0.95631 0.88660 1.21723 1.00803 0.93012 0.99920 1.21705 0.98979 1.01830 0.92651 1.18714 0.96770 0.86914 0.93826 0.94575 1.21123 1.28587 0.97928 1.07724 0.92591 1.24912 0.94874 0.97426 0.96483 1.69887 1.33810 1.12797 1.36182 0.86543 0.78712 0.79753 0.83052 1.19793 1.21023 1.20985 1.22456 0.98297 0.96763 0.87001 0.90324 0.88635 0.89608 0.77046 0.92336 0.93435 0.91848 0.92572 0.88659 0.94559 0.93006 0.93839 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.25 11.46 59.85 0.69 1.94 16 2 N -0.37 -5.96 4.05 -68.74 -0.28 -6.24 16 3 N -0.33 -5.30 12.68 29.29 0.37 -4.93 16 4 C 0.20 3.08 13.02 -91.81 -1.20 1.89 16 5 N -0.56 -10.32 11.17 -15.20 -0.17 -10.49 16 6 C 0.46 8.30 6.32 -320.80 -2.03 6.27 16 7 N -0.48 -8.89 4.62 -174.98 -0.81 -9.69 16 8 C 0.08 1.32 5.38 -3.83 -0.02 1.30 16 9 C -0.12 -2.13 6.09 -26.64 -0.16 -2.29 16 10 C -0.11 -2.56 5.02 -26.61 -0.13 -2.69 16 11 C 0.06 1.36 2.26 -91.69 -0.21 1.16 16 12 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.51 -13.76 8.56 -34.44 -0.29 -14.05 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -24.49 11.35 55.43 0.63 -23.86 16 17 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.08 1.72 4.59 -3.83 -0.02 1.71 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.21 2.30 8.06 -52.48 -0.42 1.88 16 26 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 2.39 6.15 -51.93 -0.32 2.07 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 LS Contribution 282.50 15.07 4.26 4.26 Total: -1.00 -29.62 282.50 -9.42 -39.04 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.93 Total: -0.80 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.47 Total: -3.13 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.26 Total: -55.22 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.62 -9.42 -39.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325838.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.589 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds