Wall clock time and date at job start Sun Mar 29 2020 21:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40427 * 126.82560 * 2 1 4 4 C 1.30584 * 106.99392 * 179.82639 * 3 2 1 5 5 N 1.33367 * 109.11554 * 0.44228 * 4 3 2 6 6 C 1.31574 * 109.69553 * 359.71198 * 5 4 3 7 7 N 1.38327 * 126.07798 * 179.97438 * 6 5 4 8 8 C 1.46848 * 111.00076 * 296.90472 * 7 6 5 9 9 C 1.53041 * 109.52306 * 185.84054 * 8 7 6 10 10 C 1.53127 * 109.27327 * 300.81557 * 9 8 7 11 11 C 1.53110 * 109.15907 * 57.65863 * 10 9 8 12 12 H 1.08997 * 109.50755 * 62.32332 * 11 10 9 13 13 C 1.50705 * 109.50470 * 182.40327 * 11 10 9 14 14 H 1.07997 * 120.00136 * 119.99884 * 13 11 10 15 15 C 1.37877 * 119.99576 * 299.99948 * 13 11 10 16 16 N 1.31519 * 120.00189 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99727 * 179.97438 * 15 13 11 18 18 H 1.48488 * 109.47251 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46473 * 120.00517 * 17 15 13 20 20 H 1.48500 * 109.47195 * 239.99769 * 17 15 13 21 21 C 1.46853 * 110.99696 * 61.10974 * 7 6 5 22 22 H 1.08998 * 109.47306 * 264.26900 * 1 2 3 23 23 H 1.09001 * 109.46750 * 144.26925 * 1 2 3 24 24 H 1.09000 * 109.47366 * 24.27207 * 1 2 3 25 25 H 1.08009 * 125.44063 * 180.15368 * 4 3 2 26 26 H 1.09000 * 109.45911 * 305.84723 * 8 7 6 27 27 H 1.08991 * 109.46670 * 65.82881 * 8 7 6 28 28 H 1.08995 * 109.50445 * 60.75401 * 9 8 7 29 29 H 1.09000 * 109.50250 * 180.88109 * 9 8 7 30 30 H 1.08998 * 109.51950 * 177.56284 * 10 9 8 31 31 H 1.09000 * 109.52232 * 297.75351 * 10 9 8 32 32 H 0.96996 * 119.99899 * 179.97438 * 16 15 13 33 33 H 1.08991 * 109.46290 * 294.17905 * 21 7 6 34 34 H 1.09002 * 109.45833 * 54.14853 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1241 0.0000 4 6 3.5351 0.6811 0.0038 5 7 3.5184 -0.6525 -0.0036 6 6 2.2742 -1.0804 -0.0059 7 7 1.8676 -2.4026 -0.0137 8 6 2.3056 -3.0807 -1.2404 9 6 1.7169 -4.4927 -1.2823 10 6 2.1855 -5.2725 -0.0506 11 6 1.7586 -4.5202 1.2128 12 1 0.6709 -4.4618 1.2516 13 6 2.2671 -5.2503 2.4292 14 1 2.9394 -4.7554 3.1143 15 6 1.8739 -6.5502 2.6673 16 7 1.0548 -7.1528 1.8332 17 14 2.5047 -7.4555 4.1746 18 1 3.4052 -6.5629 4.9474 19 1 1.3568 -7.8579 5.0266 20 1 3.2527 -8.6655 3.7484 21 6 2.3461 -3.1073 1.1824 22 1 -0.3634 -0.1026 1.0225 23 1 -0.3633 -0.8343 -0.6001 24 1 -0.3634 0.9368 -0.4224 25 1 4.4227 1.2964 0.0072 26 1 1.9623 -2.5182 -2.1086 27 1 3.3938 -3.1405 -1.2535 28 1 0.6285 -4.4333 -1.2830 29 1 2.0549 -5.0012 -2.1852 30 1 1.7338 -6.2645 -0.0540 31 1 3.2713 -5.3655 -0.0698 32 1 0.7785 -8.0674 2.0005 33 1 3.4341 -3.1669 1.1579 34 1 2.0322 -2.5642 2.0738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596325838.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:58 Heat of formation + Delta-G solvation = 78.183025 kcal Electronic energy + Delta-G solvation = -17055.637158 eV Core-core repulsion = 14410.721879 eV Total energy + Delta-G solvation = -2644.915280 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.13583 -39.81972 -35.74656 -34.91641 -33.68403 -31.82806 -30.95384 -28.11710 -26.99842 -25.30648 -23.31862 -23.01212 -21.76644 -20.30777 -18.82283 -17.90399 -17.14726 -16.94740 -16.45352 -15.62392 -15.56892 -15.15222 -14.63760 -14.41439 -14.29161 -13.98787 -13.92914 -13.50057 -12.87418 -12.80451 -12.70450 -12.56558 -11.91308 -11.82051 -11.46052 -11.15880 -11.07025 -10.80013 -10.74561 -10.47196 -10.37914 -9.89186 -8.09109 -6.22224 0.47092 1.17823 1.41431 1.44364 1.54838 1.84826 2.42874 2.71138 3.18926 3.56527 3.66395 4.03328 4.16261 4.30694 4.39167 4.45265 4.54288 4.56870 4.68986 4.81832 4.84372 4.99800 5.04090 5.23884 5.28735 5.30277 5.46910 5.53258 5.64697 5.73601 6.00399 6.13474 6.26373 6.38570 6.87229 7.05917 7.45550 8.95871 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.035610 B = 0.006606 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.106091 B = 4237.322249 C = 4479.432625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.367 5.367 3 N -0.335 5.335 4 C 0.201 3.799 5 N -0.590 5.590 6 C 0.439 3.561 7 N -0.471 5.471 8 C 0.080 3.920 9 C -0.106 4.106 10 C -0.107 4.107 11 C 0.058 3.942 12 H 0.010 0.990 13 C -0.538 4.538 14 H 0.047 0.953 15 C 0.021 3.979 16 N -0.910 5.910 17 Si 0.951 3.049 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.101 3.899 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.110 0.890 25 H 0.251 0.749 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.028 0.972 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 10.939 -6.134 12.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.158 5.158 3 N -0.165 5.165 4 C -0.103 4.103 5 N -0.323 5.323 6 C 0.073 3.927 7 N -0.197 5.197 8 C -0.047 4.047 9 C -0.143 4.143 10 C -0.145 4.145 11 C 0.039 3.961 12 H 0.029 0.971 13 C -0.576 4.576 14 H 0.066 0.934 15 C -0.178 4.178 16 N -0.549 5.549 17 Si 0.777 3.223 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.026 4.026 22 H 0.103 0.897 23 H 0.120 0.880 24 H 0.129 0.871 25 H 0.267 0.733 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.049 11.328 -6.159 12.936 hybrid contribution 0.905 -0.813 0.995 1.572 sum -0.144 10.515 -5.164 11.715 Atomic orbital electron populations 1.22189 0.71509 1.05965 1.04791 1.50486 1.09183 1.02882 1.53298 1.77937 1.02551 1.07734 1.28236 1.26488 0.96694 0.89997 0.97091 1.71038 1.20509 1.13175 1.27574 1.22073 0.85118 0.89475 0.96012 1.59132 1.59051 0.95669 1.05865 1.22086 0.98255 0.95292 0.89042 1.21609 1.00836 0.93149 0.98747 1.21514 0.97978 1.00896 0.94150 1.18594 0.95051 0.88557 0.93860 0.97148 1.21445 1.28759 0.98638 1.08801 0.93428 1.25603 0.95073 0.98119 0.99027 1.69998 1.34457 1.13060 1.37424 0.85617 0.78242 0.78536 0.79926 1.19642 1.20496 1.20452 1.22015 0.96925 0.95504 0.88182 0.89747 0.87958 0.87119 0.73299 0.89703 0.94275 0.91699 0.89929 0.91408 0.95619 0.92855 0.95335 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.09 11.46 127.77 1.46 3.55 16 2 N -0.37 -11.15 4.05 -371.39 -1.51 -12.65 16 3 N -0.33 -10.03 12.68 -61.24 -0.78 -10.81 16 4 C 0.20 5.73 13.02 180.76 2.35 8.08 16 5 N -0.59 -20.75 11.17 -202.02 -2.26 -23.01 16 6 C 0.44 15.32 6.32 260.78 1.65 16.97 16 7 N -0.47 -17.25 4.62 -707.50 -3.27 -20.52 16 8 C 0.08 2.68 5.38 86.33 0.46 3.15 16 9 C -0.11 -3.72 6.09 30.65 0.19 -3.54 16 10 C -0.11 -4.88 5.02 30.67 0.15 -4.73 16 11 C 0.06 2.87 2.26 -11.49 -0.03 2.84 16 12 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 13 C -0.54 -29.38 8.56 25.60 0.22 -29.16 16 14 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 15 C 0.02 1.15 5.30 84.65 0.45 1.60 16 16 N -0.91 -50.91 11.35 21.45 0.24 -50.66 16 17 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 C 0.10 4.36 4.59 86.33 0.40 4.75 16 22 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.25 4.67 8.06 -2.91 -0.02 4.65 16 26 H 0.08 2.44 8.10 -2.39 -0.02 2.42 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.07 3.47 6.15 -2.39 -0.01 3.46 16 31 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 2.21 8.10 -2.39 -0.02 2.19 16 Total: -1.00 -63.48 282.50 2.85 -60.63 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.08 Total: 8.40 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 7.31 Total: 3.53 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -7.56 Total: -117.65 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -63.48 2.85 -60.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325838.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.811 kcal (2) G-P(sol) polarization free energy of solvation -63.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds