Wall clock time and date at job start Sun Mar 29 2020 21:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53781 * 113.61429 * 2 1 4 4 C 1.53781 * 87.08070 * 270.79753 * 3 2 1 5 5 C 1.53003 * 113.61337 * 219.93686 * 4 3 2 6 6 N 1.46900 * 109.47021 * 183.47109 * 5 4 3 7 7 C 1.46897 * 111.00149 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47317 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47151 * 54.99739 * 8 7 6 10 10 C 1.47197 * 109.46935 * 295.00047 * 8 7 6 11 11 N 7.08684 * 110.18231 * 269.51434 * 2 1 3 12 12 C 1.52993 * 109.47121 * 174.99530 * 8 7 6 13 13 C 1.50707 * 109.47079 * 184.99803 * 12 8 7 14 14 H 1.08001 * 119.99937 * 0.02562 * 13 12 8 15 15 C 1.37877 * 119.99788 * 180.02562 * 13 12 8 16 16 N 1.31519 * 120.00222 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99656 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46916 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47145 * 119.99830 * 17 15 13 20 20 H 1.48502 * 109.46793 * 239.99432 * 17 15 13 21 21 C 1.53786 * 87.17350 * 334.52830 * 4 3 2 22 22 H 1.08998 * 109.46824 * 60.00430 * 1 2 3 23 23 H 1.08998 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47263 * 300.00711 * 1 2 3 25 25 H 1.09005 * 112.84647 * 131.19360 * 2 1 3 26 26 H 1.08999 * 113.61181 * 156.24808 * 3 2 1 27 27 H 1.08998 * 113.61680 * 25.34360 * 3 2 1 28 28 H 1.09002 * 113.61445 * 89.11830 * 4 3 2 29 29 H 1.09000 * 109.47107 * 303.47037 * 5 4 3 30 30 H 1.08997 * 109.47112 * 63.47187 * 5 4 3 31 31 H 1.00905 * 111.00223 * 56.04248 * 6 5 4 32 32 H 1.09008 * 109.46708 * 299.99808 * 7 6 5 33 33 H 1.08990 * 109.47145 * 59.99619 * 7 6 5 34 34 H 1.08995 * 109.47654 * 305.00211 * 12 8 7 35 35 H 1.09001 * 109.46986 * 65.00576 * 12 8 7 36 36 H 0.96996 * 119.99813 * 180.02562 * 16 15 13 37 37 H 1.08992 * 113.61675 * 140.02412 * 21 4 3 38 38 H 1.09000 * 113.60973 * 270.92699 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0951 1.3458 -1.5357 5 6 3.3286 1.9441 -2.2150 6 7 3.1487 1.9123 -3.6725 7 6 4.3166 2.4796 -4.3597 8 6 4.0923 2.4298 -5.8723 9 1 3.1569 2.9328 -6.1177 10 6 4.0251 1.0268 -6.3124 11 7 3.9750 -0.0564 -6.6515 12 6 5.2508 3.1324 -6.5830 13 6 4.9706 3.1917 -8.0626 14 1 4.0573 2.7707 -8.4566 15 6 5.8801 3.7834 -8.9133 16 7 6.9919 4.2965 -8.4335 17 14 5.5324 3.8574 -10.7472 18 1 4.2237 3.2148 -11.0292 19 1 5.4931 5.2754 -11.1867 20 1 6.6044 3.1405 -11.4835 21 6 2.1489 -0.1849 -1.3985 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.9532 -0.6616 0.7559 26 1 3.1585 1.4429 0.4023 27 1 1.4939 2.1707 0.4275 28 1 1.1595 1.7138 -1.9570 29 1 3.4594 2.9755 -1.8874 30 1 4.2100 1.3626 -1.9449 31 1 2.3022 2.3902 -3.9430 32 1 4.4546 3.5147 -4.0471 33 1 5.2046 1.9015 -4.1044 34 1 5.3565 4.1445 -6.1924 35 1 6.1731 2.5780 -6.4099 36 1 7.6316 4.7130 -9.0320 37 1 1.4993 -0.7092 -2.0992 38 1 3.1622 -0.5860 -1.3779 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598728685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:29 Heat of formation + Delta-G solvation = 1.039776 kcal Electronic energy + Delta-G solvation = -16029.125372 eV Core-core repulsion = 13484.405253 eV Total energy + Delta-G solvation = -2544.720118 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29030 -38.62392 -36.40694 -35.34036 -33.36950 -30.69386 -28.54102 -26.53369 -26.33508 -23.99650 -23.46890 -22.50304 -19.44161 -18.58600 -18.33853 -16.70473 -16.46392 -16.28511 -15.82056 -15.21647 -15.18125 -14.66042 -14.29036 -14.16172 -13.83992 -13.69642 -13.31510 -13.12058 -13.08586 -12.99623 -12.74871 -12.53240 -12.43877 -12.34132 -11.93374 -11.77046 -11.50198 -11.33481 -11.15254 -10.97448 -10.72771 -10.55980 -9.24930 -8.19829 -6.28055 1.39032 1.42187 1.52738 2.07620 2.14501 2.41499 3.15228 3.19383 3.37084 3.74534 3.82725 3.88012 4.04836 4.22199 4.37279 4.50314 4.59563 4.65625 4.74492 4.81295 4.86585 4.91230 4.93369 5.01211 5.01708 5.03910 5.13728 5.24514 5.36407 5.46917 5.54959 5.62078 5.69677 5.79275 6.07911 6.22590 6.58214 6.83440 6.94053 7.40687 8.91344 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.052370 B = 0.003947 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.524670 B = 7093.054534 C = 7339.584566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C -0.125 4.125 4 C -0.102 4.102 5 C 0.071 3.929 6 N -0.701 5.701 7 C 0.079 3.921 8 C 0.020 3.980 9 H 0.120 0.880 10 C 0.266 3.734 11 N -0.516 5.516 12 C 0.037 3.963 13 C -0.538 4.538 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.924 5.924 17 Si 0.949 3.051 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.286 1.286 21 C -0.130 4.130 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.349 0.651 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.036 0.964 35 H -0.001 1.001 36 H 0.264 0.736 37 H 0.053 0.947 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 -1.683 17.799 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 C -0.163 4.163 4 C -0.121 4.121 5 C -0.057 4.057 6 N -0.333 5.333 7 C -0.051 4.051 8 C -0.002 4.002 9 H 0.138 0.862 10 C -0.050 4.050 11 N -0.194 5.194 12 C -0.002 4.002 13 C -0.576 4.576 14 H 0.073 0.927 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.775 3.225 18 H -0.193 1.193 19 H -0.197 1.197 20 H -0.212 1.212 21 C -0.168 4.168 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.168 0.832 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.652 -3.878 17.182 20.585 hybrid contribution 0.263 1.267 -1.034 1.656 sum -10.389 -2.612 16.148 19.378 Atomic orbital electron populations 1.21587 0.93416 1.01934 1.02123 1.22380 0.96239 0.97691 0.97163 1.22979 1.01466 0.97012 0.94838 1.22502 0.97989 0.95954 0.95666 1.21964 0.98153 0.99293 0.86332 1.60419 1.05015 1.60871 1.07035 1.21848 0.94050 0.99287 0.89942 1.19192 1.03202 0.82525 0.95281 0.86194 1.29387 0.90503 0.94789 0.90323 1.80978 1.11619 1.14733 1.12044 1.18998 0.91699 0.95642 0.93836 1.21598 1.05043 1.37207 0.93792 0.92739 1.25730 0.94959 0.95182 1.03005 1.70041 1.10301 1.39488 1.36583 0.85627 0.78141 0.78094 0.80609 1.19336 1.19730 1.21189 1.23003 1.00464 0.96441 0.96883 0.92769 0.92471 0.91514 0.90634 0.89845 0.90609 0.89033 0.94039 0.91886 0.83236 0.91589 0.91601 0.94577 0.98228 0.92716 0.92793 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.59 71.98 0.69 -1.15 16 2 C -0.12 -1.81 4.55 -10.18 -0.05 -1.86 16 3 C -0.13 -1.84 7.23 31.12 0.23 -1.62 16 4 C -0.10 -1.82 3.54 -10.26 -0.04 -1.86 16 5 C 0.07 1.45 5.51 86.30 0.48 1.93 16 6 N -0.70 -17.18 6.20 -513.89 -3.19 -20.37 16 7 C 0.08 2.24 5.05 86.30 0.44 2.67 16 8 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 9 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 10 C 0.27 11.16 13.67 89.44 1.22 12.38 16 11 N -0.52 -23.81 18.54 20.01 0.37 -23.44 16 12 C 0.04 1.72 4.42 29.85 0.13 1.85 16 13 C -0.54 -28.65 8.60 25.60 0.22 -28.43 16 14 H 0.05 2.88 7.59 -2.91 -0.02 2.85 16 15 C 0.01 0.55 5.46 84.65 0.46 1.01 16 16 N -0.92 -53.28 13.29 21.45 0.28 -52.99 16 17 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 C -0.13 -2.57 7.22 31.21 0.23 -2.34 16 22 H 0.05 0.78 7.35 -2.39 -0.02 0.76 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 27 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 28 H 0.09 1.59 7.66 -2.39 -0.02 1.57 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 1.39 7.88 -2.39 -0.02 1.37 16 31 H 0.35 7.47 8.73 -89.69 -0.78 6.69 16 32 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.05 1.18 8.11 -2.39 -0.02 1.16 16 38 H 0.07 1.50 7.92 -2.39 -0.02 1.48 16 Total: -1.00 -62.66 319.09 3.71 -58.95 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.24 Total: 8.94 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 3.98 Total: -16.73 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -2.53 Total: -96.80 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.66 3.71 -58.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598728685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.994 kcal (2) G-P(sol) polarization free energy of solvation -62.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds