Wall clock time and date at job start Sun Mar 29 2020 21:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53781 * 113.61429 * 2 1 4 4 C 1.53781 * 87.08070 * 270.79753 * 3 2 1 5 5 C 1.53003 * 113.61337 * 219.93686 * 4 3 2 6 6 N 1.46900 * 109.47021 * 183.47109 * 5 4 3 7 7 C 1.46897 * 111.00149 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47317 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.46868 * 305.00106 * 8 7 6 10 10 C 1.47206 * 109.47120 * 64.99497 * 8 7 6 11 11 N 7.65032 * 94.23803 * 301.46347 * 2 1 3 12 12 C 1.52991 * 109.47021 * 184.99606 * 8 7 6 13 13 C 1.50708 * 109.47278 * 174.99707 * 12 8 7 14 14 H 1.08007 * 119.99403 * 0.02562 * 13 12 8 15 15 C 1.37875 * 120.00239 * 179.97438 * 13 12 8 16 16 N 1.31513 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99625 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47452 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46757 * 120.00586 * 17 15 13 20 20 H 1.48508 * 109.47181 * 240.00016 * 17 15 13 21 21 C 1.53786 * 87.17350 * 334.52830 * 4 3 2 22 22 H 1.08998 * 109.46824 * 60.00430 * 1 2 3 23 23 H 1.08998 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47263 * 300.00711 * 1 2 3 25 25 H 1.09005 * 112.84647 * 131.19360 * 2 1 3 26 26 H 1.08999 * 113.61181 * 156.24808 * 3 2 1 27 27 H 1.08998 * 113.61680 * 25.34360 * 3 2 1 28 28 H 1.09002 * 113.61445 * 89.11830 * 4 3 2 29 29 H 1.09000 * 109.47107 * 303.47037 * 5 4 3 30 30 H 1.08997 * 109.47112 * 63.47187 * 5 4 3 31 31 H 1.00901 * 111.00278 * 303.95625 * 6 5 4 32 32 H 1.09008 * 109.46708 * 299.99808 * 7 6 5 33 33 H 1.08990 * 109.47145 * 59.99619 * 7 6 5 34 34 H 1.08999 * 109.47568 * 295.00097 * 12 8 7 35 35 H 1.08999 * 109.47345 * 55.00105 * 12 8 7 36 36 H 0.97001 * 120.00172 * 179.97438 * 16 15 13 37 37 H 1.08992 * 113.61675 * 140.02412 * 21 4 3 38 38 H 1.09000 * 113.60973 * 270.92699 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0951 1.3458 -1.5357 5 6 3.3286 1.9441 -2.2150 6 7 3.1487 1.9123 -3.6725 7 6 4.3166 2.4796 -4.3597 8 6 4.0923 2.4298 -5.8723 9 1 3.8660 1.4068 -6.1726 10 6 2.9656 3.3069 -6.2305 11 7 2.0954 3.9822 -6.5077 12 6 5.3567 2.9045 -6.5912 13 6 5.1806 2.7399 -8.0789 14 1 4.2588 2.3373 -8.4722 15 6 6.1958 3.1041 -8.9377 16 7 7.3180 3.5948 -8.4588 17 14 5.9771 2.9006 -10.7817 18 1 4.6340 2.3321 -11.0612 19 1 6.1016 4.2239 -11.4439 20 1 7.0218 1.9845 -11.3060 21 6 2.1489 -0.1849 -1.3985 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.9532 -0.6616 0.7559 26 1 3.1585 1.4429 0.4023 27 1 1.4939 2.1707 0.4275 28 1 1.1595 1.7138 -1.9570 29 1 3.4594 2.9755 -1.8874 30 1 4.2100 1.3626 -1.9449 31 1 2.9612 0.9742 -3.9934 32 1 4.4546 3.5147 -4.0471 33 1 5.2046 1.9015 -4.1044 34 1 5.5333 3.9551 -6.3603 35 1 6.2083 2.3113 -6.2583 36 1 8.0324 3.8507 -9.0630 37 1 1.4993 -0.7092 -2.0992 38 1 3.1622 -0.5860 -1.3779 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598728695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:31 Heat of formation + Delta-G solvation = 17.798400 kcal Electronic energy + Delta-G solvation = -16015.338961 eV Core-core repulsion = 13471.345551 eV Total energy + Delta-G solvation = -2543.993410 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58214 -37.14500 -34.99283 -33.48429 -31.72722 -29.74091 -27.09512 -25.85144 -25.12317 -22.56131 -21.93236 -21.46746 -18.69055 -17.16462 -16.39949 -15.75178 -15.29284 -14.79348 -14.58066 -14.14870 -13.84295 -13.69997 -12.92694 -12.78652 -12.44347 -12.32657 -12.23673 -12.04764 -11.90552 -11.53824 -11.29099 -11.08906 -10.98169 -10.70550 -10.64947 -10.50436 -10.29068 -10.23122 -10.07108 -9.50385 -9.19162 -8.45887 -8.25527 -6.09257 -4.12261 3.28785 3.37051 3.41896 3.76844 3.86457 4.18066 4.40457 4.41964 4.52422 4.60631 4.75450 4.94474 5.19838 5.28971 5.32442 5.37228 5.50829 5.53131 5.59446 5.62721 5.68797 5.72994 5.79171 5.83190 5.95569 6.01210 6.05592 6.20930 6.38227 6.43855 6.52019 7.16291 7.43227 7.52771 7.56391 7.86383 8.23905 8.61396 8.92877 9.53270 11.01720 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.048010 B = 0.003926 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.074551 B = 7130.335662 C = 7278.845988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 C -0.133 4.133 4 C -0.106 4.106 5 C 0.069 3.931 6 N -0.693 5.693 7 C 0.066 3.934 8 C 0.009 3.991 9 H 0.098 0.902 10 C 0.256 3.744 11 N -0.480 5.480 12 C 0.031 3.969 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.137 4.137 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.340 0.660 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.026 0.974 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.064 -8.180 16.812 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C -0.171 4.171 4 C -0.125 4.125 5 C -0.060 4.060 6 N -0.324 5.324 7 C -0.064 4.064 8 C -0.013 4.013 9 H 0.116 0.884 10 C -0.061 4.061 11 N -0.157 5.157 12 C -0.008 4.008 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.174 4.174 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.158 0.842 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.565 -6.499 16.322 19.545 hybrid contribution 1.061 -1.007 -0.876 1.706 sum -7.504 -7.507 15.445 18.741 Atomic orbital electron populations 1.21594 0.94014 1.01650 1.01980 1.22320 0.95755 0.97559 0.97845 1.23001 1.01004 0.96887 0.96164 1.22574 0.99502 0.95473 0.94923 1.21930 0.95604 1.00623 0.87887 1.60516 1.40250 1.27273 1.04349 1.22066 0.91054 1.00724 0.92556 1.19214 0.91573 0.96643 0.93847 0.88368 1.28853 0.92864 0.93168 0.91192 1.80970 1.12892 1.11121 1.10728 1.19174 0.89193 0.97603 0.94806 1.21195 1.01143 1.42878 0.91129 0.92429 1.24960 0.95176 0.94903 0.98998 1.69949 1.05273 1.42869 1.34982 0.86534 0.78243 0.77875 0.85423 1.19653 1.20969 1.20865 1.23134 1.00976 0.96541 0.96759 0.92269 0.92616 0.92561 0.91012 0.90224 0.91538 0.88496 0.91150 0.95191 0.84224 0.90601 0.93390 0.95556 0.94469 0.92863 0.91399 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.59 37.16 0.36 -0.67 16 2 C -0.12 -0.94 4.55 -89.67 -0.41 -1.35 16 3 C -0.13 -1.13 7.23 -25.92 -0.19 -1.32 16 4 C -0.11 -1.04 3.54 -89.80 -0.32 -1.36 16 5 C 0.07 0.77 5.51 -3.82 -0.02 0.75 16 6 N -0.69 -9.18 6.20 -113.78 -0.71 -9.89 16 7 C 0.07 0.99 5.05 -3.82 -0.02 0.97 16 8 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 9 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 10 C 0.26 5.45 13.67 -20.76 -0.28 5.17 16 11 N -0.48 -11.13 18.54 42.15 0.78 -10.34 16 12 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 13 C -0.53 -14.09 8.60 -34.44 -0.30 -14.38 16 14 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 C -0.14 -1.20 7.22 -25.77 -0.19 -1.38 16 22 H 0.06 0.48 7.35 -51.93 -0.38 0.10 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.10 1.07 7.66 -51.93 -0.40 0.67 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.32 7.88 -51.93 -0.41 -0.09 16 31 H 0.34 4.12 8.73 -39.29 -0.34 3.78 16 32 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 38 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -29.76 319.09 -7.75 -37.51 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.54 Total: -2.14 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.80 Total: -11.41 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.81 Total: -45.16 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.76 -7.75 -37.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598728695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.310 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds