Wall clock time and date at job start Sun Mar 29 2020 21:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53781 * 113.61429 * 2 1 4 4 C 1.53781 * 87.08070 * 270.79753 * 3 2 1 5 5 C 1.53003 * 113.61337 * 219.93686 * 4 3 2 6 6 N 1.46900 * 109.47021 * 183.47109 * 5 4 3 7 7 C 1.46897 * 111.00149 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47317 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.46868 * 305.00106 * 8 7 6 10 10 C 1.47206 * 109.47120 * 64.99497 * 8 7 6 11 11 N 7.65032 * 94.23803 * 301.46347 * 2 1 3 12 12 C 1.52991 * 109.47021 * 184.99606 * 8 7 6 13 13 C 1.50708 * 109.47278 * 174.99707 * 12 8 7 14 14 H 1.08007 * 119.99403 * 0.02562 * 13 12 8 15 15 C 1.37875 * 120.00239 * 179.97438 * 13 12 8 16 16 N 1.31513 * 120.00147 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99625 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47452 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46757 * 120.00586 * 17 15 13 20 20 H 1.48508 * 109.47181 * 240.00016 * 17 15 13 21 21 C 1.53786 * 87.17350 * 334.52830 * 4 3 2 22 22 H 1.08998 * 109.46824 * 60.00430 * 1 2 3 23 23 H 1.08998 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47263 * 300.00711 * 1 2 3 25 25 H 1.09005 * 112.84647 * 131.19360 * 2 1 3 26 26 H 1.08999 * 113.61181 * 156.24808 * 3 2 1 27 27 H 1.08998 * 113.61680 * 25.34360 * 3 2 1 28 28 H 1.09002 * 113.61445 * 89.11830 * 4 3 2 29 29 H 1.09000 * 109.47107 * 303.47037 * 5 4 3 30 30 H 1.08997 * 109.47112 * 63.47187 * 5 4 3 31 31 H 1.00901 * 111.00278 * 303.95625 * 6 5 4 32 32 H 1.09008 * 109.46708 * 299.99808 * 7 6 5 33 33 H 1.08990 * 109.47145 * 59.99619 * 7 6 5 34 34 H 1.08999 * 109.47568 * 295.00097 * 12 8 7 35 35 H 1.08999 * 109.47345 * 55.00105 * 12 8 7 36 36 H 0.97001 * 120.00172 * 179.97438 * 16 15 13 37 37 H 1.08992 * 113.61675 * 140.02412 * 21 4 3 38 38 H 1.09000 * 113.60973 * 270.92699 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0951 1.3458 -1.5357 5 6 3.3286 1.9441 -2.2150 6 7 3.1487 1.9123 -3.6725 7 6 4.3166 2.4796 -4.3597 8 6 4.0923 2.4298 -5.8723 9 1 3.8660 1.4068 -6.1726 10 6 2.9656 3.3069 -6.2305 11 7 2.0954 3.9822 -6.5077 12 6 5.3567 2.9045 -6.5912 13 6 5.1806 2.7399 -8.0789 14 1 4.2588 2.3373 -8.4722 15 6 6.1958 3.1041 -8.9377 16 7 7.3180 3.5948 -8.4588 17 14 5.9771 2.9006 -10.7817 18 1 4.6340 2.3321 -11.0612 19 1 6.1016 4.2239 -11.4439 20 1 7.0218 1.9845 -11.3060 21 6 2.1489 -0.1849 -1.3985 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.9532 -0.6616 0.7559 26 1 3.1585 1.4429 0.4023 27 1 1.4939 2.1707 0.4275 28 1 1.1595 1.7138 -1.9570 29 1 3.4594 2.9755 -1.8874 30 1 4.2100 1.3626 -1.9449 31 1 2.9612 0.9742 -3.9934 32 1 4.4546 3.5147 -4.0471 33 1 5.2046 1.9015 -4.1044 34 1 5.5333 3.9551 -6.3603 35 1 6.2083 2.3113 -6.2583 36 1 8.0324 3.8507 -9.0630 37 1 1.4993 -0.7092 -2.0992 38 1 3.1622 -0.5860 -1.3779 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598728695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:30 Heat of formation + Delta-G solvation = 0.759252 kcal Electronic energy + Delta-G solvation = -16016.077834 eV Core-core repulsion = 13471.345551 eV Total energy + Delta-G solvation = -2544.732283 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.31574 -38.62194 -36.40324 -35.33874 -33.36826 -30.69292 -28.53307 -26.58684 -26.33020 -24.00595 -23.45996 -22.45119 -19.37636 -18.67284 -18.35716 -16.81999 -16.54757 -16.10630 -15.72338 -15.30136 -15.17915 -14.56180 -14.42205 -14.15966 -13.80523 -13.65274 -13.34174 -13.12643 -13.08579 -12.98078 -12.80217 -12.55125 -12.49461 -12.35214 -11.90537 -11.77785 -11.47825 -11.32692 -11.15853 -10.96041 -10.69876 -10.55952 -9.29177 -8.19769 -6.28003 1.39097 1.42272 1.52809 2.07185 2.13995 2.41560 3.15304 3.19901 3.36656 3.73365 3.81365 3.91216 3.99569 4.20392 4.36684 4.51883 4.57988 4.65211 4.77376 4.79991 4.88095 4.90119 4.95787 4.99707 5.02736 5.04635 5.12325 5.25073 5.35886 5.46889 5.52923 5.62062 5.69489 5.79279 6.08324 6.22656 6.57172 6.83273 6.93538 7.40736 8.91400 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.048010 B = 0.003926 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.074551 B = 7130.335662 C = 7278.845988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C -0.129 4.129 4 C -0.107 4.107 5 C 0.071 3.929 6 N -0.702 5.702 7 C 0.078 3.922 8 C 0.020 3.980 9 H 0.120 0.880 10 C 0.266 3.734 11 N -0.516 5.516 12 C 0.037 3.963 13 C -0.538 4.538 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.924 5.924 17 Si 0.949 3.051 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.134 4.134 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.348 0.652 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.000 1.000 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.065 0.935 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 -9.477 17.470 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C -0.167 4.167 4 C -0.126 4.126 5 C -0.057 4.057 6 N -0.334 5.334 7 C -0.052 4.052 8 C -0.002 4.002 9 H 0.138 0.862 10 C -0.050 4.050 11 N -0.194 5.194 12 C -0.002 4.002 13 C -0.577 4.577 14 H 0.073 0.927 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.775 3.225 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.171 4.171 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.167 0.833 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.018 0.982 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.783 -7.810 16.989 20.658 hybrid contribution 1.115 -0.597 -1.055 1.647 sum -7.668 -8.406 15.934 19.580 Atomic orbital electron populations 1.21602 0.93822 1.02042 1.01810 1.22324 0.95932 0.97305 0.97624 1.23006 1.01509 0.97259 0.94951 1.22510 0.98121 0.96278 0.95681 1.21955 0.96754 1.00570 0.86466 1.60449 1.39382 1.27944 1.05588 1.21859 0.92488 1.00878 0.89980 1.19193 0.88347 0.96746 0.95928 0.86239 1.29379 0.92792 0.92669 0.90160 1.80968 1.14188 1.12211 1.11986 1.18998 0.91399 0.96085 0.93688 1.21597 1.00786 1.42178 0.93092 0.92747 1.25726 0.95112 0.94911 1.03113 1.70039 1.06010 1.43972 1.36377 0.85627 0.78431 0.77745 0.80669 1.19343 1.21184 1.19728 1.23128 1.01340 0.95488 0.97147 0.93203 0.91963 0.91988 0.90115 0.89516 0.91556 0.89997 0.91910 0.93985 0.83303 0.91490 0.91585 0.98183 0.94575 0.92712 0.91626 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.59 71.98 0.69 -1.16 16 2 C -0.11 -1.60 4.55 -10.18 -0.05 -1.65 16 3 C -0.13 -1.97 7.23 31.12 0.23 -1.74 16 4 C -0.11 -1.94 3.54 -10.26 -0.04 -1.98 16 5 C 0.07 1.47 5.51 86.30 0.48 1.94 16 6 N -0.70 -17.40 6.20 -513.89 -3.19 -20.59 16 7 C 0.08 2.23 5.05 86.30 0.44 2.66 16 8 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 9 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 10 C 0.27 11.17 13.67 89.45 1.22 12.40 16 11 N -0.52 -23.80 18.54 20.01 0.37 -23.43 16 12 C 0.04 1.72 4.42 29.85 0.13 1.85 16 13 C -0.54 -28.67 8.60 25.60 0.22 -28.45 16 14 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 15 C 0.01 0.56 5.46 84.65 0.46 1.02 16 16 N -0.92 -53.25 13.29 21.45 0.28 -52.96 16 17 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 C -0.13 -2.08 7.22 31.21 0.23 -1.85 16 22 H 0.05 0.77 7.35 -2.39 -0.02 0.75 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.09 1.21 8.10 -2.39 -0.02 1.19 16 27 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 28 H 0.08 1.75 7.66 -2.39 -0.02 1.73 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 0.78 7.88 -2.39 -0.02 0.76 16 31 H 0.35 7.69 8.73 -89.69 -0.78 6.91 16 32 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.06 1.05 8.11 -2.39 -0.02 1.03 16 38 H 0.08 1.23 7.92 -2.39 -0.02 1.21 16 Total: -1.00 -62.39 319.09 3.71 -58.68 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.24 Total: 8.95 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 3.98 Total: -16.28 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -2.53 Total: -96.98 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.39 3.71 -58.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598728695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.438 kcal (2) G-P(sol) polarization free energy of solvation -62.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds