Wall clock time and date at job start Sun Mar 29 2020 21:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47306 * 2 1 4 4 N 1.46901 * 109.47299 * 119.99803 * 2 1 3 5 5 C 1.46900 * 111.00355 * 274.00160 * 4 2 1 6 6 H 1.09009 * 109.46763 * 33.39646 * 5 4 2 7 7 C 1.52994 * 109.47301 * 153.39445 * 5 4 2 8 8 C 1.50703 * 109.46923 * 273.39942 * 5 4 2 9 9 H 1.07994 * 119.99784 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99736 * 179.97438 * 8 5 4 11 11 N 1.31517 * 119.99779 * 179.97438 * 10 8 5 12 12 Si 1.86796 * 120.00175 * 359.97438 * 10 8 5 13 13 H 1.48499 * 109.47473 * 89.99858 * 12 10 8 14 14 H 1.48503 * 109.47256 * 209.99875 * 12 10 8 15 15 H 1.48501 * 109.47359 * 329.99957 * 12 10 8 16 16 C 1.50703 * 109.47543 * 239.99945 * 2 1 3 17 17 N 1.31787 * 119.08040 * 285.00537 * 16 2 1 18 18 C 1.32554 * 121.00746 * 180.02562 * 17 16 2 19 19 C 1.38115 * 119.19846 * 359.97438 * 18 17 16 20 20 C 1.39625 * 118.33565 * 0.28154 * 19 18 17 21 21 N 1.38536 * 120.53162 * 179.72526 * 20 19 18 22 22 N 1.31749 * 119.08343 * 105.01435 * 16 2 1 23 23 H 1.09002 * 109.46482 * 185.17435 * 1 2 3 24 24 H 1.08995 * 109.47145 * 305.17088 * 1 2 3 25 25 H 1.08994 * 109.46907 * 65.17788 * 1 2 3 26 26 H 1.00899 * 111.00081 * 150.04434 * 4 2 1 27 27 H 1.08994 * 109.47022 * 57.27517 * 7 5 4 28 28 H 1.09005 * 109.47203 * 177.27767 * 7 5 4 29 29 H 1.09000 * 109.47553 * 297.26942 * 7 5 4 30 30 H 0.96998 * 119.99846 * 179.97438 * 11 10 8 31 31 H 1.08003 * 120.39868 * 180.02562 * 18 17 16 32 32 H 1.08005 * 120.83251 * 180.02562 * 19 18 17 33 33 H 0.96999 * 120.00444 * 359.97438 * 21 20 19 34 34 H 0.97004 * 120.00161 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.1050 0.2282 2.3410 6 1 1.3068 0.9674 2.2720 7 6 1.9589 -0.5601 3.6440 8 6 3.4400 0.9274 2.3238 9 1 4.1537 0.7092 1.5432 10 6 3.7500 1.8455 3.3046 11 7 4.9151 2.4552 3.2898 12 14 2.5151 2.2232 4.6543 13 1 2.7331 1.3004 5.7971 14 1 2.6929 3.6255 5.1096 15 1 1.1376 2.0441 4.1293 16 6 2.0325 -0.7104 -1.2304 17 7 1.9649 -2.0255 -1.2833 18 6 2.3962 -2.6892 -2.3465 19 6 2.9228 -1.9858 -3.4121 20 6 2.9848 -0.5938 -3.3215 21 7 3.5096 0.1564 -4.3611 22 7 2.5272 0.0005 -2.2232 23 1 -0.3632 -1.0235 0.0927 24 1 -0.3633 0.5919 0.8400 25 1 -0.3633 0.4314 -0.9327 26 1 2.9097 -1.1342 1.0239 27 1 2.7278 -1.3312 3.6903 28 1 2.0704 0.1157 4.4920 29 1 0.9742 -1.0263 3.6782 30 1 5.1331 3.1014 3.9796 31 1 2.3357 -3.7671 -2.3795 32 1 3.2815 -2.4997 -4.2916 33 1 3.8381 -0.2848 -5.1601 34 1 3.5493 1.1230 -4.2899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601228071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:10 Heat of formation + Delta-G solvation = 55.437676 kcal Electronic energy + Delta-G solvation = -16648.378851 eV Core-core repulsion = 14002.477259 eV Total energy + Delta-G solvation = -2645.901592 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72871 -36.77057 -35.29541 -33.34521 -32.22503 -31.03423 -29.60734 -27.58678 -24.87090 -24.40179 -23.52051 -20.89684 -19.73500 -17.97843 -17.40160 -16.68861 -15.70147 -15.22355 -15.02530 -14.86970 -14.40419 -14.02603 -13.37863 -12.95551 -12.69880 -12.15159 -12.05770 -11.78349 -11.52728 -11.20179 -10.98164 -10.70790 -10.60969 -10.18236 -9.93836 -9.71206 -9.46857 -9.17507 -8.89502 -8.54782 -8.30733 -7.31635 -6.07278 -4.08078 1.23841 1.61753 3.30601 3.34547 3.40253 3.43216 4.12881 4.34699 4.42009 4.53821 4.99429 5.20639 5.27645 5.35987 5.53837 5.74509 5.92952 6.05581 6.21372 6.49087 6.50136 6.51518 6.65863 6.75261 6.83436 7.02059 7.07682 7.20137 7.31988 7.61926 7.72571 8.07975 8.42237 8.52099 8.64244 8.95399 9.55967 11.05941 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032479 B = 0.006692 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.878223 B = 4182.798954 C = 4572.604042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.154 3.846 3 H 0.077 0.923 4 N -0.660 5.660 5 C 0.175 3.825 6 H 0.035 0.965 7 C -0.134 4.134 8 C -0.545 4.545 9 H 0.070 0.930 10 C 0.072 3.928 11 N -0.899 5.899 12 Si 0.893 3.107 13 H -0.278 1.278 14 H -0.299 1.299 15 H -0.265 1.265 16 C 0.373 3.627 17 N -0.533 5.533 18 C 0.172 3.828 19 C -0.307 4.307 20 C 0.434 3.566 21 N -0.841 5.841 22 N -0.571 5.571 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.338 0.662 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.263 0.737 31 H 0.162 0.838 32 H 0.135 0.865 33 H 0.408 0.592 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 -7.037 -13.497 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.042 3.958 3 H 0.094 0.906 4 N -0.292 5.292 5 C 0.065 3.935 6 H 0.052 0.948 7 C -0.192 4.192 8 C -0.583 4.583 9 H 0.088 0.912 10 C -0.131 4.131 11 N -0.537 5.537 12 Si 0.724 3.276 13 H -0.205 1.205 14 H -0.227 1.227 15 H -0.190 1.190 16 C 0.104 3.896 17 N -0.251 5.251 18 C 0.009 3.991 19 C -0.336 4.336 20 C 0.188 3.812 21 N -0.385 5.385 22 N -0.295 5.295 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.156 0.844 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.179 0.821 32 H 0.153 0.847 33 H 0.238 0.762 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.387 -6.716 -12.423 15.499 hybrid contribution 1.014 0.594 -0.677 1.356 sum -5.374 -6.122 -13.100 15.426 Atomic orbital electron populations 1.21730 0.93734 1.02540 1.00707 1.20189 0.95342 0.96102 0.84188 0.90554 1.60874 1.33899 1.31486 1.02898 1.19660 0.96565 0.89980 0.87258 0.94761 1.21986 0.99501 0.99774 0.97966 1.21746 1.00782 1.23232 1.12578 0.91158 1.25014 0.95060 0.95281 0.97717 1.69929 1.21563 1.27558 1.34670 0.86765 0.82415 0.76048 0.82380 1.20529 1.22695 1.19000 1.23215 0.87239 0.86547 0.92602 1.68359 1.20998 1.09458 1.26245 1.22955 0.88436 1.00507 0.87227 1.22046 1.13761 0.93752 1.04002 1.18537 0.87040 0.88435 0.87157 1.42137 1.68563 1.10055 1.17795 1.67832 1.18270 1.41639 1.01766 0.91624 0.91827 0.93601 0.84415 0.93095 0.94446 0.94577 0.92712 0.82062 0.84700 0.76202 0.76352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.37 37.16 0.35 -1.87 16 2 C 0.15 3.08 2.81 -68.86 -0.19 2.89 16 3 H 0.08 1.72 7.66 -51.93 -0.40 1.32 16 4 N -0.66 -14.33 5.88 -102.16 -0.60 -14.93 16 5 C 0.17 4.22 1.98 -68.87 -0.14 4.08 16 6 H 0.03 0.85 6.29 -51.92 -0.33 0.52 16 7 C -0.13 -3.04 9.02 37.15 0.33 -2.71 16 8 C -0.54 -15.48 8.93 -34.44 -0.31 -15.79 16 9 H 0.07 2.20 7.96 -52.49 -0.42 1.78 16 10 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 11 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 12 Si 0.89 22.32 24.40 -169.99 -4.15 18.17 16 13 H -0.28 -6.78 6.84 56.52 0.39 -6.40 16 14 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 15 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 16 C 0.37 7.00 6.26 -157.24 -0.98 6.01 16 17 N -0.53 -9.20 10.03 -10.81 -0.11 -9.31 16 18 C 0.17 2.32 11.29 -17.28 -0.20 2.12 16 19 C -0.31 -3.75 10.04 -39.11 -0.39 -4.15 16 20 C 0.43 6.18 7.82 -154.78 -1.21 4.97 16 21 N -0.84 -8.38 9.06 31.24 0.28 -8.10 16 22 N -0.57 -10.24 10.35 -9.97 -0.10 -10.34 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.06 1.09 7.59 -51.93 -0.39 0.69 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.34 7.71 7.91 -39.29 -0.31 7.40 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.87 3.23 -51.93 -0.17 0.70 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.16 1.57 8.06 -52.48 -0.42 1.14 16 32 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.41 2.63 8.84 -40.82 -0.36 2.27 16 34 H 0.41 3.91 8.95 -40.82 -0.37 3.55 16 LS Contribution 282.55 15.07 4.26 4.26 Total: -1.00 -32.85 282.55 -6.94 -39.79 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -4.46 Total: 9.98 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.83 Total: -2.43 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: 0.24 Total: -69.77 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.15 Total: 18.17 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.85 -6.94 -39.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601228071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.229 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds