Wall clock time and date at job start Sun Mar 29 2020 21:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47306 * 2 1 4 4 N 1.46901 * 109.47299 * 119.99803 * 2 1 3 5 5 C 1.46900 * 111.00355 * 274.00160 * 4 2 1 6 6 H 1.09009 * 109.46763 * 33.39646 * 5 4 2 7 7 C 1.52994 * 109.47301 * 153.39445 * 5 4 2 8 8 C 1.50703 * 109.46923 * 273.39942 * 5 4 2 9 9 H 1.07994 * 119.99784 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99736 * 179.97438 * 8 5 4 11 11 N 1.31517 * 119.99779 * 179.97438 * 10 8 5 12 12 Si 1.86796 * 120.00175 * 359.97438 * 10 8 5 13 13 H 1.48499 * 109.47473 * 89.99858 * 12 10 8 14 14 H 1.48503 * 109.47256 * 209.99875 * 12 10 8 15 15 H 1.48501 * 109.47359 * 329.99957 * 12 10 8 16 16 C 1.50703 * 109.47543 * 239.99945 * 2 1 3 17 17 N 1.31787 * 119.08040 * 285.00537 * 16 2 1 18 18 C 1.32554 * 121.00746 * 180.02562 * 17 16 2 19 19 C 1.38115 * 119.19846 * 359.97438 * 18 17 16 20 20 C 1.39625 * 118.33565 * 0.28154 * 19 18 17 21 21 N 1.38536 * 120.53162 * 179.72526 * 20 19 18 22 22 N 1.31749 * 119.08343 * 105.01435 * 16 2 1 23 23 H 1.09002 * 109.46482 * 185.17435 * 1 2 3 24 24 H 1.08995 * 109.47145 * 305.17088 * 1 2 3 25 25 H 1.08994 * 109.46907 * 65.17788 * 1 2 3 26 26 H 1.00899 * 111.00081 * 150.04434 * 4 2 1 27 27 H 1.08994 * 109.47022 * 57.27517 * 7 5 4 28 28 H 1.09005 * 109.47203 * 177.27767 * 7 5 4 29 29 H 1.09000 * 109.47553 * 297.26942 * 7 5 4 30 30 H 0.96998 * 119.99846 * 179.97438 * 11 10 8 31 31 H 1.08003 * 120.39868 * 180.02562 * 18 17 16 32 32 H 1.08005 * 120.83251 * 180.02562 * 19 18 17 33 33 H 0.96999 * 120.00444 * 359.97438 * 21 20 19 34 34 H 0.97004 * 120.00161 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.1050 0.2282 2.3410 6 1 1.3068 0.9674 2.2720 7 6 1.9589 -0.5601 3.6440 8 6 3.4400 0.9274 2.3238 9 1 4.1537 0.7092 1.5432 10 6 3.7500 1.8455 3.3046 11 7 4.9151 2.4552 3.2898 12 14 2.5151 2.2232 4.6543 13 1 2.7331 1.3004 5.7971 14 1 2.6929 3.6255 5.1096 15 1 1.1376 2.0441 4.1293 16 6 2.0325 -0.7104 -1.2304 17 7 1.9649 -2.0255 -1.2833 18 6 2.3962 -2.6892 -2.3465 19 6 2.9228 -1.9858 -3.4121 20 6 2.9848 -0.5938 -3.3215 21 7 3.5096 0.1564 -4.3611 22 7 2.5272 0.0005 -2.2232 23 1 -0.3632 -1.0235 0.0927 24 1 -0.3633 0.5919 0.8400 25 1 -0.3633 0.4314 -0.9327 26 1 2.9097 -1.1342 1.0239 27 1 2.7278 -1.3312 3.6903 28 1 2.0704 0.1157 4.4920 29 1 0.9742 -1.0263 3.6782 30 1 5.1331 3.1014 3.9796 31 1 2.3357 -3.7671 -2.3795 32 1 3.2815 -2.4997 -4.2916 33 1 3.8381 -0.2848 -5.1601 34 1 3.5493 1.1230 -4.2899 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601228071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:10 Heat of formation + Delta-G solvation = 28.797182 kcal Electronic energy + Delta-G solvation = -16649.534070 eV Core-core repulsion = 14002.477259 eV Total energy + Delta-G solvation = -2647.056810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.89494 -38.39983 -36.47395 -35.02994 -33.79769 -32.70066 -30.77346 -29.22803 -27.01759 -25.69925 -24.60486 -22.46275 -21.48202 -19.14575 -19.08585 -18.23178 -17.02525 -16.71941 -16.27982 -16.14782 -15.85440 -15.55708 -14.82353 -14.67781 -14.36993 -13.98070 -13.73241 -13.37401 -12.92980 -12.76714 -12.60539 -12.38817 -12.31940 -11.87879 -11.51756 -11.33214 -11.26336 -10.89535 -10.73377 -10.09775 -9.29036 -9.14643 -8.32724 -6.38875 0.09296 0.51962 1.32754 1.37719 1.49249 2.31791 2.37708 2.94190 3.03348 3.11344 3.34075 3.76057 4.01815 4.27766 4.41783 4.46910 4.60700 4.63511 4.70855 4.75046 4.89245 4.99978 5.03213 5.17669 5.32528 5.46708 5.50896 5.54710 6.01599 6.07213 6.23022 6.39315 6.54973 6.73212 6.85018 7.29641 7.45138 8.84201 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032479 B = 0.006692 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.878223 B = 4182.798954 C = 4572.604042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.152 3.848 3 H 0.039 0.961 4 N -0.647 5.647 5 C 0.179 3.821 6 H 0.034 0.966 7 C -0.131 4.131 8 C -0.547 4.547 9 H 0.022 0.978 10 C 0.013 3.987 11 N -0.949 5.949 12 Si 0.958 3.042 13 H -0.263 1.263 14 H -0.299 1.299 15 H -0.244 1.244 16 C 0.350 3.650 17 N -0.555 5.555 18 C 0.160 3.840 19 C -0.288 4.288 20 C 0.416 3.584 21 N -0.823 5.823 22 N -0.607 5.607 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.328 0.672 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.266 0.734 31 H 0.201 0.799 32 H 0.179 0.821 33 H 0.426 0.574 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.048 -8.519 -14.228 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.040 3.960 3 H 0.057 0.943 4 N -0.277 5.277 5 C 0.069 3.931 6 H 0.052 0.948 7 C -0.188 4.188 8 C -0.585 4.585 9 H 0.041 0.959 10 C -0.185 4.185 11 N -0.589 5.589 12 Si 0.784 3.216 13 H -0.189 1.189 14 H -0.227 1.227 15 H -0.167 1.167 16 C 0.081 3.919 17 N -0.273 5.273 18 C -0.001 4.001 19 C -0.316 4.316 20 C 0.169 3.831 21 N -0.369 5.369 22 N -0.333 5.333 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.144 0.856 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.218 0.782 32 H 0.197 0.803 33 H 0.260 0.740 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -7.896 -8.229 -13.219 17.459 hybrid contribution 1.603 1.023 -0.678 2.018 sum -6.293 -7.206 -13.897 16.872 Atomic orbital electron populations 1.21625 0.91556 1.02923 1.01416 1.20135 0.96997 0.94161 0.84694 0.94302 1.60927 1.32916 1.30603 1.03239 1.19574 0.93741 0.90405 0.89370 0.94819 1.21907 1.01198 0.99420 0.96298 1.21998 1.01843 1.23653 1.11047 0.95945 1.25940 0.97053 0.95002 1.00497 1.70083 1.23996 1.28748 1.36074 0.85718 0.80607 0.75939 0.79319 1.18870 1.22725 1.16720 1.22771 0.89184 0.87358 0.92613 1.68287 1.22176 1.08686 1.28195 1.23648 0.87768 1.02211 0.86507 1.22474 1.11511 0.92759 1.04861 1.18965 0.87201 0.89907 0.87014 1.42118 1.67217 1.10142 1.17387 1.67712 1.19613 1.42826 1.03113 0.91084 0.91850 0.92276 0.85559 0.93320 0.94841 0.91601 0.92538 0.78241 0.80315 0.73984 0.76163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 9.37 71.98 0.67 -3.30 16 2 C 0.15 6.25 2.81 44.17 0.12 6.37 16 3 H 0.04 1.86 7.66 -2.38 -0.02 1.84 16 4 N -0.65 -28.45 5.88 -477.13 -2.81 -31.25 16 5 C 0.18 8.66 1.98 44.17 0.09 8.74 16 6 H 0.03 1.65 6.29 -2.38 -0.01 1.63 16 7 C -0.13 -5.67 9.02 71.98 0.65 -5.02 16 8 C -0.55 -32.16 8.93 25.60 0.23 -31.94 16 9 H 0.02 1.49 7.96 -2.91 -0.02 1.47 16 10 C 0.01 0.77 5.45 84.65 0.46 1.23 16 11 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 12 Si 0.96 45.74 24.40 68.60 1.67 47.41 16 13 H -0.26 -11.87 6.84 99.48 0.68 -11.19 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.24 -10.72 6.53 99.48 0.65 -10.07 16 16 C 0.35 13.32 6.26 138.77 0.87 14.18 16 17 N -0.55 -18.74 10.03 -188.10 -1.89 -20.62 16 18 C 0.16 3.92 11.29 84.55 0.95 4.88 16 19 C -0.29 -6.19 10.04 22.58 0.23 -5.96 16 20 C 0.42 11.27 7.82 133.16 1.04 12.31 16 21 N -0.82 -14.94 9.06 -55.09 -0.50 -15.43 16 22 N -0.61 -22.02 10.35 -185.44 -1.92 -23.94 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.06 2.11 7.59 -2.39 -0.02 2.09 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.33 15.46 7.91 -89.69 -0.71 14.75 16 27 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.03 1.47 3.23 -2.38 -0.01 1.46 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.43 4.29 8.84 -92.71 -0.82 3.47 16 34 H 0.41 7.45 8.95 -92.70 -0.83 6.62 16 Total: -1.00 -74.10 282.55 -1.12 -75.22 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -1.30 Total: 27.57 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 5.32 Total: 1.50 kcal Atomic # 7 Polarization: -144.90 SS G_CDS: -6.81 Total: -151.71 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.41 kcal Total: -74.10 -1.12 -75.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601228071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.018 kcal (2) G-P(sol) polarization free energy of solvation -74.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds