Wall clock time and date at job start Sun Mar 29 2020 21:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47139 * 2 1 4 4 C 1.50698 * 109.47123 * 120.00333 * 2 1 3 5 5 H 1.07995 * 120.00505 * 120.00024 * 4 2 1 6 6 C 1.37882 * 119.99839 * 299.99625 * 4 2 1 7 7 N 1.31516 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99845 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47045 * 90.00688 * 8 6 4 10 10 H 1.48501 * 109.47348 * 210.00313 * 8 6 4 11 11 H 1.48493 * 109.47506 * 330.00230 * 8 6 4 12 12 N 1.46894 * 109.46957 * 240.00105 * 2 1 3 13 13 C 1.46906 * 111.00022 * 85.00182 * 12 2 1 14 14 H 1.09002 * 109.46718 * 324.99375 * 13 12 2 15 15 C 1.53000 * 109.47094 * 84.99808 * 13 12 2 16 16 C 1.50698 * 109.47057 * 205.00200 * 13 12 2 17 17 N 1.31795 * 119.08167 * 314.99521 * 16 13 12 18 18 C 1.32549 * 121.00732 * 180.02562 * 17 16 13 19 19 C 1.38119 * 119.20254 * 359.97438 * 18 17 16 20 20 C 1.39619 * 118.32925 * 0.28015 * 19 18 17 21 21 N 1.38548 * 120.52939 * 179.72294 * 20 19 18 22 22 N 1.31745 * 119.08728 * 134.97652 * 16 13 12 23 23 H 1.09001 * 109.47139 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46849 * 299.99477 * 1 2 3 25 25 H 1.08999 * 109.47121 * 59.99364 * 1 2 3 26 26 H 0.96996 * 119.99789 * 179.97438 * 7 6 4 27 27 H 1.00900 * 111.00007 * 208.95447 * 12 2 1 28 28 H 1.09003 * 109.46981 * 60.00391 * 15 13 12 29 29 H 1.09002 * 109.46882 * 179.97438 * 15 13 12 30 30 H 1.08996 * 109.47118 * 300.00146 * 15 13 12 31 31 H 1.08006 * 120.39643 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.83114 * 179.97438 * 19 18 17 33 33 H 0.97006 * 119.99622 * 359.97438 * 21 20 19 34 34 H 0.96995 * 120.00347 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3432 -0.9495 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2227 -2.3469 14 1 1.2576 0.9330 -2.2906 15 6 3.4111 0.9810 -2.3223 16 6 1.9785 -0.5675 -3.6259 17 7 2.6881 -1.6703 -3.7570 18 6 2.6263 -2.3944 -4.8655 19 6 1.8033 -1.9815 -5.8950 20 6 1.0694 -0.8059 -5.7257 21 7 0.2341 -0.3467 -6.7312 22 7 1.1806 -0.1369 -4.5817 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.7083 1.1608 3.4844 27 1 2.9173 -1.1205 -1.0287 28 1 4.2360 0.2706 -2.3786 29 1 3.4579 1.6596 -3.1740 30 1 3.4863 1.5525 -1.3973 31 1 3.2118 -3.2968 -4.9622 32 1 1.7331 -2.5511 -6.8099 33 1 0.1560 -0.8428 -7.5611 34 1 -0.2725 0.4708 -6.6053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601228080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:13 Heat of formation + Delta-G solvation = 46.879617 kcal Electronic energy + Delta-G solvation = -16497.474809 eV Core-core repulsion = 13851.202111 eV Total energy + Delta-G solvation = -2646.272697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.67217 -36.72397 -35.25770 -33.34050 -32.27800 -30.55961 -29.39746 -26.83077 -25.16960 -24.39812 -23.50531 -21.08672 -19.50807 -17.96671 -17.38825 -16.26961 -15.68407 -15.17538 -14.83966 -14.78019 -14.18483 -13.78455 -13.51668 -13.12817 -12.42397 -12.28041 -11.75151 -11.47611 -11.37361 -10.90159 -10.73057 -10.61334 -10.38735 -10.25216 -10.05233 -9.91855 -9.62254 -8.88338 -8.76310 -8.41866 -8.29202 -7.18114 -5.96545 -4.02042 1.29843 1.64935 3.33782 3.34478 3.40853 3.45675 4.16061 4.39750 4.47998 4.59799 5.03192 5.29446 5.34919 5.50864 5.61186 5.71777 5.81258 5.90232 6.21064 6.42453 6.49143 6.65781 6.95306 7.04699 7.19822 7.23605 7.30458 7.57011 7.74152 7.85743 7.97270 8.34479 8.48427 8.65112 8.76392 9.09676 9.63433 11.09938 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.043234 B = 0.005491 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.475651 B = 5097.615404 C = 5287.284461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.213 3.787 3 H 0.005 0.995 4 C -0.514 4.514 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.673 5.673 13 C 0.149 3.851 14 H 0.096 0.904 15 C -0.169 4.169 16 C 0.393 3.607 17 N -0.537 5.537 18 C 0.175 3.825 19 C -0.312 4.312 20 C 0.434 3.566 21 N -0.843 5.843 22 N -0.578 5.578 23 H 0.030 0.970 24 H 0.081 0.919 25 H 0.004 0.996 26 H 0.260 0.740 27 H 0.342 0.658 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.161 0.839 32 H 0.134 0.866 33 H 0.408 0.592 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -2.316 -16.998 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.022 0.978 4 C -0.553 4.553 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.305 5.305 13 C 0.035 3.965 14 H 0.114 0.886 15 C -0.229 4.229 16 C 0.125 3.875 17 N -0.254 5.254 18 C 0.011 3.989 19 C -0.340 4.340 20 C 0.188 3.812 21 N -0.388 5.388 22 N -0.303 5.303 23 H 0.049 0.951 24 H 0.099 0.901 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.161 0.839 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.152 0.848 33 H 0.237 0.763 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.738 -1.975 -16.150 16.287 hybrid contribution 0.604 -0.354 -0.193 0.727 sum 1.342 -2.329 -16.342 16.562 Atomic orbital electron populations 1.21742 0.98012 0.99304 0.99334 1.19138 0.92474 0.92545 0.85298 0.97756 1.21253 1.31246 1.12471 0.90318 0.92120 1.24908 0.95090 0.95031 0.98980 1.69902 1.36699 1.23012 1.23364 0.86525 0.78399 0.80126 0.82508 1.20793 1.21318 1.19857 1.60567 1.33294 1.31738 1.04908 1.20181 0.97949 0.91920 0.86418 0.88624 1.22408 0.97667 1.00596 1.02204 1.23156 0.83736 0.87945 0.92699 1.68283 1.25716 1.07507 1.23914 1.22924 0.91948 0.96806 0.87218 1.22005 1.07035 1.00910 1.04033 1.18511 0.86863 0.88516 0.87298 1.42119 1.48972 1.30832 1.16844 1.67775 1.24881 1.36024 1.01580 0.95115 0.90071 0.97675 0.93006 0.83919 0.92075 0.93276 0.91001 0.82209 0.84828 0.76253 0.76525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.18 37.16 0.34 -2.90 16 2 C 0.21 5.49 2.41 -68.87 -0.17 5.32 16 3 H 0.00 0.13 7.11 -51.93 -0.37 -0.24 16 4 C -0.51 -14.30 8.59 -34.44 -0.30 -14.59 16 5 H 0.06 1.67 7.62 -52.49 -0.40 1.27 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 12 N -0.67 -15.21 5.84 -102.17 -0.60 -15.80 16 13 C 0.15 2.94 2.80 -68.86 -0.19 2.75 16 14 H 0.10 2.00 7.09 -51.93 -0.37 1.64 16 15 C -0.17 -2.96 9.13 37.16 0.34 -2.62 16 16 C 0.39 7.34 6.60 -157.24 -1.04 6.31 16 17 N -0.54 -9.46 10.10 -10.81 -0.11 -9.57 16 18 C 0.17 2.41 11.29 -17.29 -0.20 2.21 16 19 C -0.31 -3.81 10.04 -39.11 -0.39 -4.20 16 20 C 0.43 6.00 7.82 -154.77 -1.21 4.78 16 21 N -0.84 -7.84 9.06 31.24 0.28 -7.56 16 22 N -0.58 -10.02 10.35 -9.97 -0.10 -10.12 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 25 H 0.00 0.10 7.43 -51.93 -0.39 -0.28 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.34 7.69 7.96 -39.29 -0.31 7.38 16 28 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.31 7.43 -51.93 -0.39 0.93 16 31 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.41 2.42 8.84 -40.82 -0.36 2.05 16 34 H 0.41 3.50 8.95 -40.82 -0.37 3.14 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -31.57 288.03 -8.00 -39.56 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.51 Total: 8.99 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.90 Total: -1.32 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: 0.10 Total: -68.08 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.57 -8.00 -39.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601228080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.440 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds