Wall clock time and date at job start Sun Mar 29 2020 21:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47139 * 2 1 4 4 C 1.50698 * 109.47123 * 120.00333 * 2 1 3 5 5 H 1.07995 * 120.00505 * 120.00024 * 4 2 1 6 6 C 1.37882 * 119.99839 * 299.99625 * 4 2 1 7 7 N 1.31516 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99845 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47045 * 90.00688 * 8 6 4 10 10 H 1.48501 * 109.47348 * 210.00313 * 8 6 4 11 11 H 1.48493 * 109.47506 * 330.00230 * 8 6 4 12 12 N 1.46894 * 109.46957 * 240.00105 * 2 1 3 13 13 C 1.46906 * 111.00022 * 85.00182 * 12 2 1 14 14 H 1.09002 * 109.46718 * 324.99375 * 13 12 2 15 15 C 1.53000 * 109.47094 * 84.99808 * 13 12 2 16 16 C 1.50698 * 109.47057 * 205.00200 * 13 12 2 17 17 N 1.31795 * 119.08167 * 314.99521 * 16 13 12 18 18 C 1.32549 * 121.00732 * 180.02562 * 17 16 13 19 19 C 1.38119 * 119.20254 * 359.97438 * 18 17 16 20 20 C 1.39619 * 118.32925 * 0.28015 * 19 18 17 21 21 N 1.38548 * 120.52939 * 179.72294 * 20 19 18 22 22 N 1.31745 * 119.08728 * 134.97652 * 16 13 12 23 23 H 1.09001 * 109.47139 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46849 * 299.99477 * 1 2 3 25 25 H 1.08999 * 109.47121 * 59.99364 * 1 2 3 26 26 H 0.96996 * 119.99789 * 179.97438 * 7 6 4 27 27 H 1.00900 * 111.00007 * 208.95447 * 12 2 1 28 28 H 1.09003 * 109.46981 * 60.00391 * 15 13 12 29 29 H 1.09002 * 109.46882 * 179.97438 * 15 13 12 30 30 H 1.08996 * 109.47118 * 300.00146 * 15 13 12 31 31 H 1.08006 * 120.39643 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.83114 * 179.97438 * 19 18 17 33 33 H 0.97006 * 119.99622 * 359.97438 * 21 20 19 34 34 H 0.96995 * 120.00347 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6297 -0.5460 4.4124 10 1 1.3432 -0.9495 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2227 -2.3469 14 1 1.2576 0.9330 -2.2906 15 6 3.4111 0.9810 -2.3223 16 6 1.9785 -0.5675 -3.6259 17 7 2.6881 -1.6703 -3.7570 18 6 2.6263 -2.3944 -4.8655 19 6 1.8033 -1.9815 -5.8950 20 6 1.0694 -0.8059 -5.7257 21 7 0.2341 -0.3467 -6.7312 22 7 1.1806 -0.1369 -4.5817 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 0.7083 1.1608 3.4844 27 1 2.9173 -1.1205 -1.0287 28 1 4.2360 0.2706 -2.3786 29 1 3.4579 1.6596 -3.1740 30 1 3.4863 1.5525 -1.3973 31 1 3.2118 -3.2968 -4.9622 32 1 1.7331 -2.5511 -6.8099 33 1 0.1560 -0.8428 -7.5611 34 1 -0.2725 0.4708 -6.6053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601228080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:13 Heat of formation + Delta-G solvation = 23.395656 kcal Electronic energy + Delta-G solvation = -16498.493150 eV Core-core repulsion = 13851.202111 eV Total energy + Delta-G solvation = -2647.291038 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.81687 -38.36504 -36.41098 -35.09010 -33.64982 -32.17610 -30.65913 -28.65107 -27.26320 -25.75887 -24.56853 -22.64963 -21.33273 -19.09820 -18.81625 -17.89906 -16.93360 -16.53486 -16.18878 -16.08641 -15.62970 -15.54408 -14.95266 -14.45587 -14.20415 -13.95021 -13.36919 -13.22785 -12.81390 -12.62827 -12.53098 -12.35832 -12.24328 -12.14435 -11.89307 -11.43200 -10.90700 -10.80127 -10.53924 -10.05355 -9.24409 -9.00853 -8.09618 -6.22869 0.16844 0.57423 1.44945 1.46060 1.57063 2.39313 2.47010 2.98293 3.19023 3.19753 3.50063 3.90420 4.08452 4.25452 4.27413 4.44678 4.55087 4.73365 4.82323 4.82763 4.92478 5.08579 5.18646 5.23561 5.48854 5.52110 5.71119 5.87289 6.07505 6.23949 6.28192 6.51848 6.78243 6.91316 7.04572 7.46956 7.51002 8.96456 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.043234 B = 0.005491 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.475651 B = 5097.615404 C = 5287.284461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.219 3.781 3 H -0.020 1.020 4 C -0.534 4.534 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.672 5.672 13 C 0.150 3.850 14 H 0.076 0.924 15 C -0.156 4.156 16 C 0.373 3.627 17 N -0.565 5.565 18 C 0.159 3.841 19 C -0.293 4.293 20 C 0.419 3.581 21 N -0.822 5.822 22 N -0.605 5.605 23 H 0.022 0.978 24 H 0.060 0.940 25 H 0.016 0.984 26 H 0.262 0.738 27 H 0.341 0.659 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.195 0.805 32 H 0.177 0.823 33 H 0.426 0.574 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -3.637 -18.653 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.111 3.889 3 H -0.002 1.002 4 C -0.572 4.572 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.304 5.304 13 C 0.037 3.963 14 H 0.094 0.906 15 C -0.216 4.216 16 C 0.103 3.897 17 N -0.284 5.284 18 C -0.002 4.002 19 C -0.321 4.321 20 C 0.172 3.828 21 N -0.368 5.368 22 N -0.331 5.331 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.159 0.841 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.212 0.788 32 H 0.195 0.805 33 H 0.259 0.741 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.125 -3.309 -17.879 18.218 hybrid contribution 0.429 0.053 0.141 0.454 sum 1.554 -3.256 -17.738 18.101 Atomic orbital electron populations 1.21564 0.98224 0.98461 0.98836 1.18915 0.92244 0.91324 0.86423 1.00245 1.21534 1.31569 1.12639 0.91450 0.92361 1.25711 0.95160 0.95692 1.01930 1.70024 1.37442 1.24127 1.24128 0.85477 0.78009 0.78995 0.78642 1.19969 1.20922 1.19432 1.60460 1.33243 1.32202 1.04452 1.20071 0.98190 0.91606 0.86439 0.90615 1.22251 0.96721 1.00539 1.02090 1.22619 0.85588 0.88884 0.92626 1.68205 1.26377 1.07714 1.26088 1.23559 0.92634 0.97445 0.86542 1.22423 1.04788 0.99942 1.04931 1.18904 0.87697 0.89104 0.87096 1.42091 1.47407 1.30863 1.16464 1.67659 1.25346 1.37284 1.02832 0.95905 0.92093 0.96537 0.92851 0.84067 0.91615 0.91553 0.92510 0.78808 0.80520 0.74062 0.76042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.97 9.18 71.98 0.66 -5.31 16 2 C 0.22 11.66 2.41 44.17 0.11 11.77 16 3 H -0.02 -1.14 7.11 -2.39 -0.02 -1.16 16 4 C -0.53 -30.16 8.59 25.60 0.22 -29.94 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 6 C 0.01 0.80 5.30 84.66 0.45 1.24 16 7 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 8 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 N -0.67 -31.11 5.84 -477.15 -2.79 -33.90 16 13 C 0.15 6.07 2.80 44.17 0.12 6.19 16 14 H 0.08 3.31 7.09 -2.39 -0.02 3.29 16 15 C -0.16 -5.57 9.13 71.98 0.66 -4.92 16 16 C 0.37 13.85 6.60 138.76 0.92 14.77 16 17 N -0.57 -19.41 10.10 -188.10 -1.90 -21.31 16 18 C 0.16 3.98 11.29 84.56 0.95 4.94 16 19 C -0.29 -6.14 10.04 22.57 0.23 -5.91 16 20 C 0.42 10.59 7.82 133.16 1.04 11.63 16 21 N -0.82 -12.93 9.06 -55.09 -0.50 -13.43 16 22 N -0.61 -20.55 10.35 -185.44 -1.92 -22.47 16 23 H 0.02 1.18 8.14 -2.39 -0.02 1.17 16 24 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 25 H 0.02 0.78 7.43 -2.39 -0.02 0.77 16 26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.34 15.68 7.96 -89.69 -0.71 14.97 16 28 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 30 H 0.06 2.15 7.43 -2.39 -0.02 2.13 16 31 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.43 3.45 8.84 -92.70 -0.82 2.63 16 34 H 0.41 6.15 8.95 -92.71 -0.83 5.32 16 Total: -1.00 -68.91 288.03 -0.71 -69.62 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -1.23 Total: 24.15 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.35 Total: 4.46 kcal Atomic # 7 Polarization: -137.69 SS G_CDS: -6.86 Total: -144.56 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -68.91 -0.71 -69.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601228080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.012 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds