Wall clock time and date at job start Sun Mar 29 2020 22:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.50709 * 109.47130 * 179.97438 * 15 14 13 17 17 C 1.40892 * 126.28865 * 90.02165 * 16 15 14 18 18 C 1.34848 * 107.41344 * 179.97438 * 17 16 15 19 19 N 1.36340 * 108.22022 * 359.97438 * 18 17 16 20 20 C 1.46506 * 125.63379 * 179.97438 * 19 18 17 21 21 C 1.34852 * 126.29066 * 269.71235 * 16 15 14 22 22 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 24 24 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 25 25 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 26 26 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 29 29 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 30 30 H 1.00907 * 110.99905 * 303.95595 * 14 13 2 31 31 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 32 32 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 33 33 H 1.08000 * 126.28801 * 359.94939 * 17 16 15 34 34 H 1.08005 * 125.88903 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.46184 * 90.03206 * 20 19 18 36 36 H 1.08989 * 109.47057 * 210.02717 * 20 19 18 37 37 H 1.08996 * 109.47440 * 330.03762 * 20 19 18 38 38 H 1.07998 * 125.89224 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 1.9987 -0.1340 -6.4619 11 1 0.0184 0.6649 -5.3125 12 1 2.0863 1.9251 -5.1840 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7098 0.1791 4.8708 17 6 0.5095 0.0375 5.5948 18 6 0.5303 0.9450 6.5920 19 7 1.6997 1.6412 6.5105 20 6 2.1147 2.7209 7.4097 21 6 2.4207 1.1641 5.4564 22 1 -0.3634 -1.0275 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.6053 -1.7198 -1.2952 26 1 3.1262 -0.7995 -1.2056 27 1 2.9362 -2.0177 -3.0611 28 1 1.6053 -1.7199 1.2950 29 1 3.1263 -0.7996 1.2055 30 1 1.9883 0.9872 2.3967 31 1 1.6921 -1.6248 3.7300 32 1 3.2127 -0.7039 3.6399 33 1 -0.2819 -0.6678 5.3887 34 1 -0.2453 1.0940 7.3288 35 1 2.6701 2.3015 8.2487 36 1 2.7497 3.4213 6.8675 37 1 1.2332 3.2427 7.7820 38 1 3.3926 1.5158 5.1430 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602573142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:17 Heat of formation + Delta-G solvation = 29.141638 kcal Electronic energy + Delta-G solvation = -16037.875970 eV Core-core repulsion = 13494.374439 eV Total energy + Delta-G solvation = -2543.501530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.16727 -36.88285 -34.48016 -32.87132 -31.66676 -29.10102 -27.37042 -26.31875 -25.23308 -23.56348 -22.09225 -20.39298 -19.70911 -19.05326 -17.05540 -16.62199 -15.42179 -15.10152 -14.40731 -14.24801 -13.95883 -13.64194 -13.53827 -13.07824 -12.92883 -12.53685 -12.36083 -12.09933 -11.72302 -11.44532 -11.37045 -11.15929 -10.90313 -10.61340 -10.12724 -10.02765 -9.71980 -9.37076 -8.54514 -8.38772 -8.23613 -8.18717 -7.90950 -6.26387 -3.93856 2.20143 2.86195 2.98236 3.49092 3.51456 3.69868 4.50255 4.61501 4.80799 4.85282 4.92710 5.07925 5.08391 5.35849 5.44095 5.50240 5.73194 5.74068 5.91726 5.97353 6.16599 6.17535 6.43546 6.47212 6.56288 6.70932 6.97662 7.00398 7.16702 7.19384 7.21720 7.31073 7.46664 7.51140 7.67315 7.80312 8.34640 8.57206 8.99328 9.77517 11.14156 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.053045 B = 0.003665 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.728755 B = 7638.421952 C = 7733.896089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.075 4.075 3 H 0.053 0.947 4 C 0.014 3.986 5 C -0.592 4.592 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.917 5.917 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.062 3.938 14 N -0.681 5.681 15 C 0.130 3.870 16 C -0.154 4.154 17 C -0.177 4.177 18 C -0.025 4.025 19 N -0.456 5.456 20 C 0.076 3.924 21 C -0.015 4.015 22 H 0.038 0.962 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.007 0.993 26 H 0.003 0.997 27 H 0.268 0.732 28 H 0.065 0.935 29 H 0.021 0.979 30 H 0.336 0.664 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 6.457 22.296 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.554 5.554 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.216 1.216 13 C -0.066 4.066 14 N -0.312 5.312 15 C 0.001 3.999 16 C -0.161 4.161 17 C -0.202 4.202 18 C -0.154 4.154 19 N -0.132 5.132 20 C -0.066 4.066 21 C -0.145 4.145 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.153 0.847 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.152 0.848 34 H 0.175 0.825 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.689 6.463 20.909 21.950 hybrid contribution 0.885 0.236 1.725 1.953 sum -0.804 6.699 22.634 23.618 Atomic orbital electron populations 1.21567 0.95530 1.00513 1.00264 1.21051 0.96157 0.98764 0.93444 0.92824 1.19253 0.95083 0.95632 0.92396 1.22052 1.38529 1.10195 0.92306 0.93233 1.25822 0.94778 0.97194 1.01358 1.70775 1.36067 1.15082 1.33486 0.83569 0.76059 0.75115 0.75665 1.20888 1.21480 1.21561 1.22162 0.96885 0.97800 0.89784 1.60545 1.64083 1.05545 1.00984 1.20194 0.96258 0.96710 0.86742 1.19423 0.96458 1.00840 0.99427 1.20805 0.99179 1.02599 0.97631 1.21766 0.91000 0.98718 1.03941 1.43884 1.16018 1.28763 1.24551 1.21962 1.01764 0.89188 0.93714 1.21622 0.99259 1.00876 0.92791 0.94294 0.93690 0.92800 0.97483 0.97915 0.92187 0.91668 0.96095 0.84692 0.90833 0.95565 0.84753 0.82457 0.91290 0.90053 0.90066 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.89 37.16 0.33 -2.20 16 2 C -0.08 -1.63 2.48 -90.62 -0.22 -1.85 16 3 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -17.26 8.41 -34.44 -0.29 -17.55 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.87 13.65 55.43 0.76 -28.12 16 9 Si 1.07 25.98 29.90 -169.99 -5.08 20.90 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.15 5.07 -3.83 -0.02 1.13 16 14 N -0.68 -10.94 5.94 -115.06 -0.68 -11.62 16 15 C 0.13 1.84 6.18 -4.97 -0.03 1.81 16 16 C -0.15 -2.05 5.65 -104.82 -0.59 -2.64 16 17 C -0.18 -2.26 10.81 -39.78 -0.43 -2.69 16 18 C -0.03 -0.27 11.43 -16.75 -0.19 -0.46 16 19 N -0.46 -4.59 3.15 -124.53 -0.39 -4.98 16 20 C 0.08 0.44 11.12 59.85 0.67 1.10 16 21 C -0.02 -0.18 11.35 -16.75 -0.19 -0.37 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.85 7.75 -51.93 -0.40 0.45 16 24 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 25 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 26 H 0.00 0.07 8.00 -51.93 -0.42 -0.34 16 27 H 0.27 8.40 7.22 -40.82 -0.29 8.11 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.34 5.25 8.72 -39.29 -0.34 4.90 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.39 8.14 -51.94 -0.42 -0.03 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 315.75 15.07 4.76 4.76 Total: -1.00 -32.97 315.75 -8.29 -41.26 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.47 Total: 1.02 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.17 Total: -23.21 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.32 Total: -44.72 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.08 Total: 20.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.97 -8.29 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602573142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.400 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds