Wall clock time and date at job start Sun Mar 29 2020 22:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.50709 * 109.47130 * 179.97438 * 15 14 13 17 17 C 1.40892 * 126.28865 * 90.02165 * 16 15 14 18 18 C 1.34848 * 107.41344 * 179.97438 * 17 16 15 19 19 N 1.36340 * 108.22022 * 359.97438 * 18 17 16 20 20 C 1.46506 * 125.63379 * 179.97438 * 19 18 17 21 21 C 1.34852 * 126.29066 * 269.71235 * 16 15 14 22 22 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 24 24 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 25 25 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 26 26 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 29 29 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 30 30 H 1.00907 * 110.99905 * 303.95595 * 14 13 2 31 31 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 32 32 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 33 33 H 1.08000 * 126.28801 * 359.94939 * 17 16 15 34 34 H 1.08005 * 125.88903 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.46184 * 90.03206 * 20 19 18 36 36 H 1.08989 * 109.47057 * 210.02717 * 20 19 18 37 37 H 1.08996 * 109.47440 * 330.03762 * 20 19 18 38 38 H 1.07998 * 125.89224 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 1.9987 -0.1340 -6.4619 11 1 0.0184 0.6649 -5.3125 12 1 2.0863 1.9251 -5.1840 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7098 0.1791 4.8708 17 6 0.5095 0.0375 5.5948 18 6 0.5303 0.9450 6.5920 19 7 1.6997 1.6412 6.5105 20 6 2.1147 2.7209 7.4097 21 6 2.4207 1.1641 5.4564 22 1 -0.3634 -1.0275 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.6053 -1.7198 -1.2952 26 1 3.1262 -0.7995 -1.2056 27 1 2.9362 -2.0177 -3.0611 28 1 1.6053 -1.7199 1.2950 29 1 3.1263 -0.7996 1.2055 30 1 1.9883 0.9872 2.3967 31 1 1.6921 -1.6248 3.7300 32 1 3.2127 -0.7039 3.6399 33 1 -0.2819 -0.6678 5.3887 34 1 -0.2453 1.0940 7.3288 35 1 2.6701 2.3015 8.2487 36 1 2.7497 3.4213 6.8675 37 1 1.2332 3.2427 7.7820 38 1 3.3926 1.5158 5.1430 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602573142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:16 Heat of formation + Delta-G solvation = 9.159519 kcal Electronic energy + Delta-G solvation = -16038.742459 eV Core-core repulsion = 13494.374439 eV Total energy + Delta-G solvation = -2544.368020 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.98198 -38.45713 -36.09382 -34.37175 -33.07071 -30.12455 -28.57611 -28.03325 -26.55762 -25.11357 -23.78949 -21.31667 -21.06202 -20.25153 -18.84193 -17.87939 -16.49101 -16.13441 -15.92652 -15.73689 -15.49445 -15.02179 -14.83073 -14.46471 -13.79553 -13.73890 -13.56364 -13.22199 -13.14822 -13.04343 -12.79765 -12.62993 -12.48206 -12.33158 -11.94240 -11.81460 -11.56855 -11.31827 -10.56395 -10.51011 -9.43079 -9.26176 -8.96246 -8.64731 -6.33587 1.37900 1.53130 1.62166 1.81151 2.02758 2.19442 2.59180 3.19508 3.49328 4.01586 4.04108 4.18421 4.22765 4.28824 4.42717 4.45407 4.48154 4.54101 4.72907 4.73949 4.81592 4.84154 4.89492 4.95373 5.08865 5.29184 5.32768 5.37353 5.48822 5.58101 5.65693 6.00853 6.07878 6.17610 6.23163 6.33069 6.49812 6.59343 6.63239 7.47559 8.75988 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.053045 B = 0.003665 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.728755 B = 7638.421952 C = 7733.896089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 H 0.052 0.948 4 C 0.017 3.983 5 C -0.606 4.606 6 H 0.052 0.948 7 C -0.044 4.044 8 N -0.942 5.942 9 Si 1.117 2.883 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.076 3.924 14 N -0.679 5.679 15 C 0.135 3.865 16 C -0.182 4.182 17 C -0.210 4.210 18 C -0.019 4.019 19 N -0.454 5.454 20 C 0.068 3.932 21 C -0.018 4.018 22 H 0.034 0.966 23 H 0.066 0.934 24 H 0.037 0.963 25 H -0.014 1.014 26 H -0.017 1.017 27 H 0.254 0.746 28 H 0.060 0.940 29 H 0.018 0.982 30 H 0.340 0.660 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.130 0.870 34 H 0.187 0.813 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 8.380 23.676 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.021 4.021 5 C -0.644 4.644 6 H 0.071 0.929 7 C -0.240 4.240 8 N -0.580 5.580 9 Si 0.938 3.062 10 H -0.210 1.210 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.053 4.053 14 N -0.310 5.310 15 C 0.006 3.994 16 C -0.189 4.189 17 C -0.235 4.235 18 C -0.149 4.149 19 N -0.130 5.130 20 C -0.072 4.072 21 C -0.149 4.149 22 H 0.053 0.947 23 H 0.085 0.915 24 H 0.056 0.944 25 H 0.004 0.996 26 H 0.001 0.999 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.158 0.842 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.147 0.853 34 H 0.204 0.796 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.178 8.404 22.342 23.969 hybrid contribution 1.050 -0.350 1.406 1.789 sum -1.129 8.054 23.748 25.102 Atomic orbital electron populations 1.21459 0.94655 1.00306 1.00434 1.20898 0.96748 0.98244 0.92782 0.92965 1.19188 0.93731 0.94891 0.94287 1.22450 1.38098 1.10391 0.93431 0.92945 1.27438 0.94029 0.97296 1.05236 1.70915 1.37941 1.16365 1.32813 0.82945 0.76948 0.74546 0.71762 1.20996 1.19428 1.19372 1.21867 0.96483 0.97378 0.89571 1.60499 1.64225 1.05609 1.00695 1.20132 0.96449 0.96491 0.86304 1.19423 0.97530 1.02182 0.99781 1.20964 0.99411 1.04014 0.99110 1.22183 0.91586 0.97609 1.03500 1.44201 1.15432 1.28991 1.24327 1.22275 1.03032 0.88381 0.93533 1.21873 0.99768 1.00318 0.92983 0.94688 0.91548 0.94415 0.99553 0.99875 0.93695 0.92109 0.96358 0.84232 0.91503 0.95015 0.85252 0.79627 0.89856 0.88941 0.88285 0.81004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.57 8.89 71.98 0.64 -3.93 16 2 C -0.07 -2.94 2.48 -10.79 -0.03 -2.96 16 3 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.02 0.90 3.76 29.85 0.11 1.01 16 5 C -0.61 -35.58 8.41 25.60 0.22 -35.36 16 6 H 0.05 2.99 7.06 -2.91 -0.02 2.97 16 7 C -0.04 -2.60 5.46 84.65 0.46 -2.14 16 8 N -0.94 -60.39 13.65 21.45 0.29 -60.10 16 9 Si 1.12 51.69 29.90 68.60 2.05 53.74 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 C 0.08 2.80 5.07 86.30 0.44 3.24 16 14 N -0.68 -21.32 5.94 -517.93 -3.08 -24.39 16 15 C 0.14 3.75 6.18 85.56 0.53 4.28 16 16 C -0.18 -4.67 5.65 -19.99 -0.11 -4.79 16 17 C -0.21 -5.18 10.81 22.14 0.24 -4.94 16 18 C -0.02 -0.36 11.43 83.21 0.95 0.59 16 19 N -0.45 -7.98 3.15 -547.90 -1.72 -9.70 16 20 C 0.07 0.56 11.12 127.77 1.42 1.98 16 21 C -0.02 -0.38 11.35 83.21 0.94 0.56 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.07 2.43 7.75 -2.39 -0.02 2.41 16 24 H 0.04 1.64 6.95 -2.39 -0.02 1.62 16 25 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 26 H -0.02 -0.98 8.00 -2.39 -0.02 -1.00 16 27 H 0.25 16.49 7.22 -92.71 -0.67 15.82 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.34 10.23 8.72 -89.69 -0.78 9.45 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -71.03 315.75 3.68 -67.35 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.33 Total: 15.58 kcal Atomic # 6 Polarization: -48.28 SS G_CDS: 5.81 Total: -42.46 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -4.51 Total: -94.20 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.05 Total: 53.74 kcal Total: -71.03 3.68 -67.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602573142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.505 kcal (2) G-P(sol) polarization free energy of solvation -71.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds