Wall clock time and date at job start Sun Mar 29 2020 22:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47369 * 2 1 4 4 C 1.52994 * 109.46945 * 120.00372 * 2 1 3 5 5 C 1.50697 * 109.47362 * 294.99431 * 4 2 1 6 6 H 1.07995 * 119.99842 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00160 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99805 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47439 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47427 * 120.00322 * 9 7 5 12 12 H 1.48499 * 109.47113 * 240.00173 * 9 7 5 13 13 C 1.53006 * 109.46825 * 240.00486 * 2 1 3 14 14 N 1.46898 * 109.47138 * 65.00038 * 13 2 1 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 2 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 C 1.40892 * 126.28905 * 90.02473 * 16 15 14 18 18 C 1.34848 * 107.41230 * 179.97438 * 17 16 15 19 19 N 1.36346 * 108.22070 * 359.97438 * 18 17 16 20 20 C 1.46497 * 125.63189 * 180.02562 * 19 18 17 21 21 C 1.34848 * 126.29118 * 269.71367 * 16 15 14 22 22 H 1.09000 * 109.46878 * 300.00031 * 1 2 3 23 23 H 1.08999 * 109.47096 * 59.99651 * 1 2 3 24 24 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47133 * 55.00232 * 4 2 1 26 26 H 1.09003 * 109.46947 * 174.99410 * 4 2 1 27 27 H 0.97005 * 119.99700 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.46770 * 304.99985 * 13 2 1 29 29 H 1.08995 * 109.47019 * 185.00198 * 13 2 1 30 30 H 1.00901 * 111.00121 * 56.04666 * 14 13 2 31 31 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 32 32 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 33 33 H 1.07998 * 126.29137 * 359.93958 * 17 16 15 34 34 H 1.08002 * 125.88938 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.47533 * 89.97747 * 20 19 18 36 36 H 1.09004 * 109.46746 * 209.97349 * 20 19 18 37 37 H 1.09003 * 109.47464 * 329.97222 * 20 19 18 38 38 H 1.08000 * 125.88856 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0802 0.9740 2.3757 7 6 1.9924 -0.4025 3.7283 8 7 2.6755 -1.5196 3.8510 9 14 1.4978 0.5619 5.2496 10 1 0.7405 1.7730 4.8436 11 1 0.6434 -0.2874 6.1180 12 1 2.7156 0.9664 5.9969 13 6 2.0400 -0.7212 -1.2494 14 7 1.6513 0.0376 -2.4457 15 6 2.1246 -0.6269 -3.6674 16 6 1.7076 0.1783 -4.8710 17 6 2.4475 1.2107 -5.4807 18 6 1.7217 1.6667 -6.5218 19 7 0.5612 0.9532 -6.5774 20 6 -0.5060 1.1352 -7.5644 21 6 0.5604 0.0392 -5.5659 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6054 -1.7198 1.2950 26 1 3.1263 -0.7996 1.2054 27 1 2.9228 -1.8426 4.7316 28 1 1.6053 -1.7197 -1.2953 29 1 3.1262 -0.7995 -1.2057 30 1 1.9881 0.9875 -2.3967 31 1 3.2116 -0.7049 -3.6407 32 1 1.6902 -1.6247 -3.7298 33 1 3.4173 1.5711 -5.1708 34 1 2.0104 2.4596 -7.1958 35 1 -0.3184 0.4932 -8.4251 36 1 -1.4641 0.8713 -7.1163 37 1 -0.5299 2.1764 -7.8860 38 1 -0.2247 -0.6722 -5.3559 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602573143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:19 Heat of formation + Delta-G solvation = 32.583841 kcal Electronic energy + Delta-G solvation = -16007.720962 eV Core-core repulsion = 13464.368697 eV Total energy + Delta-G solvation = -2543.352265 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12693 -36.76167 -34.31218 -32.72523 -31.63425 -29.10518 -27.40033 -26.59703 -25.19709 -23.61556 -21.98636 -20.32189 -19.65214 -18.83489 -16.98950 -16.23616 -15.38049 -15.11180 -14.55797 -14.22811 -13.94445 -13.79785 -13.17907 -12.98062 -12.81873 -12.50431 -12.28053 -12.17431 -11.76534 -11.37439 -11.28036 -11.10338 -10.79991 -10.65840 -10.21726 -10.12857 -9.60148 -9.08959 -8.88039 -8.51345 -8.27226 -8.09709 -7.85145 -5.91946 -3.92539 2.25963 2.90262 3.00246 3.36012 3.43356 3.47960 4.52366 4.54679 4.86682 4.90612 4.97933 5.12361 5.18805 5.39187 5.43894 5.52091 5.78436 5.85004 5.96162 6.04846 6.20089 6.28066 6.48664 6.53470 6.67596 6.80537 7.01400 7.13012 7.22430 7.28188 7.31002 7.36022 7.57078 7.76967 7.87146 7.95169 8.09382 8.53974 9.14344 9.70509 11.19716 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.056003 B = 0.003652 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.853340 B = 7664.770170 C = 7806.299922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.683 5.683 15 C 0.130 3.870 16 C -0.158 4.158 17 C -0.193 4.193 18 C -0.024 4.024 19 N -0.457 5.457 20 C 0.076 3.924 21 C 0.003 3.997 22 H 0.052 0.948 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.258 0.742 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.337 0.663 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 4.294 -22.176 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.066 4.066 14 N -0.314 5.314 15 C 0.001 3.999 16 C -0.165 4.165 17 C -0.218 4.218 18 C -0.153 4.153 19 N -0.133 5.133 20 C -0.066 4.066 21 C -0.128 4.128 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.155 0.845 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.175 0.825 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.823 3.939 -22.339 23.190 hybrid contribution 0.751 0.659 0.929 1.364 sum -4.073 4.597 -21.410 22.274 Atomic orbital electron populations 1.21577 0.95834 1.00448 1.00053 1.21190 0.95936 0.98908 0.94090 0.92910 1.19129 0.95912 0.95564 0.90495 1.21299 1.34297 1.08227 0.91013 0.92523 1.25028 0.95426 0.95119 0.99088 1.69985 1.39317 1.21294 1.23177 0.86578 0.78212 0.80145 0.83327 1.19753 1.21132 1.21151 1.22150 0.97059 0.97697 0.89662 1.60581 1.64022 1.05752 1.01044 1.20179 0.96664 0.96273 0.86811 1.19417 0.96050 1.01576 0.99441 1.20837 1.01138 1.01091 0.98734 1.21715 0.88168 1.02014 1.03378 1.43929 1.15927 1.28895 1.24585 1.21963 0.89981 1.03028 0.91665 1.21630 1.00780 0.98113 0.92242 0.92929 0.93930 0.94254 0.96579 0.96933 0.93218 0.91710 0.95939 0.84513 0.95218 0.91204 0.85027 0.82546 0.91303 0.89961 0.90140 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 8.89 37.16 0.33 -2.15 16 2 C -0.08 -1.76 2.48 -90.62 -0.22 -1.99 16 3 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.65 8.41 -34.44 -0.29 -14.94 16 6 H 0.06 1.59 7.06 -52.49 -0.37 1.22 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 9 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.06 1.16 5.07 -3.82 -0.02 1.14 16 14 N -0.68 -10.96 5.94 -115.05 -0.68 -11.65 16 15 C 0.13 1.84 6.18 -4.97 -0.03 1.81 16 16 C -0.16 -2.11 5.65 -104.82 -0.59 -2.70 16 17 C -0.19 -2.39 10.81 -39.78 -0.43 -2.82 16 18 C -0.02 -0.25 11.43 -16.75 -0.19 -0.44 16 19 N -0.46 -4.67 3.15 -124.53 -0.39 -5.06 16 20 C 0.08 0.45 11.12 59.85 0.67 1.11 16 21 C 0.00 0.03 11.35 -16.75 -0.19 -0.16 16 22 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 23 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.34 5.37 8.72 -39.29 -0.34 5.03 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -32.06 317.06 -8.31 -40.37 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.53 Total: 0.35 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.19 Total: -19.09 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.34 Total: -43.49 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.06 -8.31 -40.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602573143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.953 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds