Wall clock time and date at job start Sun Mar 29 2020 22:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47369 * 2 1 4 4 C 1.52994 * 109.46945 * 120.00372 * 2 1 3 5 5 C 1.50697 * 109.47362 * 294.99431 * 4 2 1 6 6 H 1.07995 * 119.99842 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00160 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99805 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47439 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47427 * 120.00322 * 9 7 5 12 12 H 1.48499 * 109.47113 * 240.00173 * 9 7 5 13 13 C 1.53006 * 109.46825 * 240.00486 * 2 1 3 14 14 N 1.46898 * 109.47138 * 65.00038 * 13 2 1 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 2 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 C 1.40892 * 126.28905 * 90.02473 * 16 15 14 18 18 C 1.34848 * 107.41230 * 179.97438 * 17 16 15 19 19 N 1.36346 * 108.22070 * 359.97438 * 18 17 16 20 20 C 1.46497 * 125.63189 * 180.02562 * 19 18 17 21 21 C 1.34848 * 126.29118 * 269.71367 * 16 15 14 22 22 H 1.09000 * 109.46878 * 300.00031 * 1 2 3 23 23 H 1.08999 * 109.47096 * 59.99651 * 1 2 3 24 24 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47133 * 55.00232 * 4 2 1 26 26 H 1.09003 * 109.46947 * 174.99410 * 4 2 1 27 27 H 0.97005 * 119.99700 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.46770 * 304.99985 * 13 2 1 29 29 H 1.08995 * 109.47019 * 185.00198 * 13 2 1 30 30 H 1.00901 * 111.00121 * 56.04666 * 14 13 2 31 31 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 32 32 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 33 33 H 1.07998 * 126.29137 * 359.93958 * 17 16 15 34 34 H 1.08002 * 125.88938 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.47533 * 89.97747 * 20 19 18 36 36 H 1.09004 * 109.46746 * 209.97349 * 20 19 18 37 37 H 1.09003 * 109.47464 * 329.97222 * 20 19 18 38 38 H 1.08000 * 125.88856 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0802 0.9740 2.3757 7 6 1.9924 -0.4025 3.7283 8 7 2.6755 -1.5196 3.8510 9 14 1.4978 0.5619 5.2496 10 1 0.7405 1.7730 4.8436 11 1 0.6434 -0.2874 6.1180 12 1 2.7156 0.9664 5.9969 13 6 2.0400 -0.7212 -1.2494 14 7 1.6513 0.0376 -2.4457 15 6 2.1246 -0.6269 -3.6674 16 6 1.7076 0.1783 -4.8710 17 6 2.4475 1.2107 -5.4807 18 6 1.7217 1.6667 -6.5218 19 7 0.5612 0.9532 -6.5774 20 6 -0.5060 1.1352 -7.5644 21 6 0.5604 0.0392 -5.5659 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6054 -1.7198 1.2950 26 1 3.1263 -0.7996 1.2054 27 1 2.9228 -1.8426 4.7316 28 1 1.6053 -1.7197 -1.2953 29 1 3.1262 -0.7995 -1.2057 30 1 1.9881 0.9875 -2.3967 31 1 3.2116 -0.7049 -3.6407 32 1 1.6902 -1.6247 -3.7298 33 1 3.4173 1.5711 -5.1708 34 1 2.0104 2.4596 -7.1958 35 1 -0.3184 0.4932 -8.4251 36 1 -1.4641 0.8713 -7.1163 37 1 -0.5299 2.1764 -7.8860 38 1 -0.2247 -0.6722 -5.3559 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602573143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:18 Heat of formation + Delta-G solvation = 13.451544 kcal Electronic energy + Delta-G solvation = -16008.550601 eV Core-core repulsion = 13464.368697 eV Total energy + Delta-G solvation = -2544.181904 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.94600 -38.30847 -35.85863 -34.27705 -33.05310 -30.15039 -28.88175 -27.99610 -26.53553 -25.10048 -23.64490 -21.12481 -20.99233 -20.16579 -18.47948 -17.78482 -16.60310 -16.43480 -16.05781 -15.62232 -15.32113 -14.79180 -14.61127 -14.22731 -13.94647 -13.73148 -13.44082 -13.30331 -13.06258 -12.97323 -12.78729 -12.65014 -12.52772 -12.20167 -12.15563 -11.89337 -11.46423 -11.07369 -10.89957 -10.52653 -9.42863 -9.17623 -8.92921 -8.16183 -6.25296 1.40900 1.41070 1.43090 1.54641 2.04714 2.23019 2.43491 3.17047 3.57845 4.03456 4.16553 4.27220 4.29320 4.39989 4.50622 4.50951 4.55488 4.58170 4.75754 4.84246 4.90297 4.93114 4.98182 5.05856 5.30842 5.32896 5.48268 5.51895 5.57746 5.60273 5.83378 5.90705 6.09629 6.18077 6.33561 6.38159 6.56208 6.62089 6.90866 7.42846 8.96224 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.056003 B = 0.003652 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.853340 B = 7664.770170 C = 7806.299922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 H 0.051 0.949 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.076 3.924 14 N -0.678 5.678 15 C 0.135 3.865 16 C -0.184 4.184 17 C -0.222 4.222 18 C -0.017 4.017 19 N -0.456 5.456 20 C 0.068 3.932 21 C -0.005 4.005 22 H 0.037 0.963 23 H 0.064 0.936 24 H 0.036 0.964 25 H -0.009 1.009 26 H -0.015 1.015 27 H 0.262 0.738 28 H 0.062 0.938 29 H 0.015 0.985 30 H 0.339 0.661 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.187 0.813 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 5.691 -23.435 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.053 4.053 14 N -0.309 5.309 15 C 0.006 3.994 16 C -0.191 4.191 17 C -0.246 4.246 18 C -0.147 4.147 19 N -0.131 5.131 20 C -0.072 4.072 21 C -0.137 4.137 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.009 0.991 26 H 0.004 0.996 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.157 0.843 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.150 0.850 34 H 0.204 0.796 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.096 5.347 -23.631 24.983 hybrid contribution 1.143 0.213 1.231 1.693 sum -4.952 5.560 -22.400 23.605 Atomic orbital electron populations 1.21464 0.94665 1.00373 1.00346 1.21014 0.96765 0.98314 0.93217 0.93060 1.19016 0.94065 0.94729 0.92716 1.21676 1.34295 1.08539 0.92090 0.92123 1.25973 0.95288 0.96134 1.02698 1.70117 1.40405 1.22983 1.24215 0.85431 0.78069 0.78874 0.78886 1.18572 1.20478 1.20503 1.21869 0.96426 0.97438 0.89575 1.60552 1.63950 1.05656 1.00743 1.20134 0.96435 0.96453 0.86423 1.19421 0.97311 1.02598 0.99755 1.21014 1.01807 1.01801 1.00022 1.22167 0.87793 1.01931 1.02849 1.44234 1.16536 1.27822 1.24515 1.22270 0.89100 1.04676 0.91179 1.21837 1.00598 0.98624 0.92619 0.94379 0.91709 0.94507 0.99087 0.99627 0.92942 0.91903 0.96654 0.84346 0.95571 0.91041 0.85038 0.79638 0.89842 0.89020 0.88289 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 8.89 71.98 0.64 -3.83 16 2 C -0.07 -3.20 2.48 -10.79 -0.03 -3.23 16 3 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.69 8.41 25.60 0.22 -30.47 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -58.38 13.29 21.45 0.28 -58.09 16 9 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 10 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.08 2.81 5.07 86.31 0.44 3.25 16 14 N -0.68 -21.38 5.94 -517.92 -3.08 -24.45 16 15 C 0.13 3.77 6.18 85.56 0.53 4.29 16 16 C -0.18 -4.76 5.65 -19.99 -0.11 -4.87 16 17 C -0.22 -5.29 10.81 22.14 0.24 -5.05 16 18 C -0.02 -0.33 11.43 83.21 0.95 0.62 16 19 N -0.46 -8.20 3.15 -547.90 -1.72 -9.93 16 20 C 0.07 0.60 11.12 127.77 1.42 2.02 16 21 C -0.01 -0.12 11.35 83.21 0.94 0.83 16 22 H 0.04 1.61 6.95 -2.39 -0.02 1.60 16 23 H 0.06 2.30 7.75 -2.39 -0.02 2.28 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 25 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 26 H -0.01 -0.87 8.14 -2.39 -0.02 -0.88 16 27 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.34 10.58 8.72 -89.69 -0.78 9.80 16 31 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -68.83 317.06 3.57 -65.26 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.23 Total: 14.11 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 5.83 Total: -34.31 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -4.52 Total: -92.47 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -68.83 3.57 -65.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602573143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.716 kcal (2) G-P(sol) polarization free energy of solvation -68.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds