Wall clock time and date at job start Sun Mar 29 2020 22:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46934 * 2 1 4 4 C 1.53005 * 109.47532 * 240.00028 * 2 1 3 5 5 C 1.53001 * 109.46851 * 64.99633 * 4 2 1 6 6 C 1.47197 * 109.47113 * 180.02562 * 5 4 2 7 7 N 4.86668 * 101.55384 * 255.91431 * 2 1 3 8 8 C 1.53002 * 109.47302 * 120.00025 * 2 1 3 9 9 N 1.46896 * 109.46922 * 295.89950 * 8 2 1 10 10 C 1.46901 * 110.99932 * 185.22629 * 9 8 2 11 11 C 1.53005 * 109.47137 * 176.68337 * 10 9 8 12 12 C 1.50704 * 115.55202 * 304.91282 * 11 10 9 13 13 H 1.07994 * 120.00094 * 114.85855 * 12 11 10 14 14 C 1.37881 * 119.99363 * 295.13450 * 12 11 10 15 15 N 1.31515 * 119.99388 * 173.54165 * 14 12 11 16 16 Si 1.86792 * 120.00213 * 353.53742 * 14 12 11 17 17 H 1.48502 * 109.47191 * 88.74180 * 16 14 12 18 18 H 1.48499 * 109.47215 * 208.73899 * 16 14 12 19 19 H 1.48498 * 109.47605 * 328.74184 * 16 14 12 20 20 C 1.53001 * 117.49589 * 90.57878 * 11 10 9 21 21 C 1.52999 * 117.49581 * 159.23672 * 11 10 9 22 22 H 1.08994 * 109.46894 * 179.06868 * 1 2 3 23 23 H 1.08994 * 109.47120 * 299.07373 * 1 2 3 24 24 H 1.09002 * 109.47039 * 59.07468 * 1 2 3 25 25 H 1.08992 * 109.47336 * 184.99784 * 4 2 1 26 26 H 1.08999 * 109.46683 * 305.00351 * 4 2 1 27 27 H 1.08994 * 109.47673 * 300.00850 * 5 4 2 28 28 H 1.09007 * 109.46636 * 60.00581 * 5 4 2 29 29 H 1.08998 * 109.47105 * 175.89734 * 8 2 1 30 30 H 1.08998 * 109.46996 * 55.89759 * 8 2 1 31 31 H 1.00908 * 111.00358 * 61.27226 * 9 8 2 32 32 H 1.08996 * 109.46903 * 56.68716 * 10 9 8 33 33 H 1.08993 * 109.47265 * 296.68291 * 10 9 8 34 34 H 0.96999 * 119.99569 * 179.97438 * 15 14 12 35 35 H 1.08994 * 117.49940 * 215.00242 * 20 11 10 36 36 H 1.09001 * 117.50092 * 0.02562 * 20 11 10 37 37 H 1.08995 * 117.50229 * 359.97438 * 21 11 10 38 38 H 1.09000 * 117.49514 * 144.97673 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6353 0.0689 -2.4953 6 6 2.1255 -0.6252 -3.6972 7 7 2.5047 -1.1604 -4.6247 8 6 2.0400 -0.7213 1.2492 9 7 1.6329 0.0261 2.4466 10 6 2.2097 -0.5686 3.6597 11 6 1.8324 0.2825 4.8739 12 6 2.2034 1.7405 4.7862 13 1 1.4300 2.4938 4.7584 14 6 3.5302 2.1124 4.7358 15 7 3.8530 3.3708 4.5318 16 14 4.8690 0.8288 4.9575 17 1 5.2134 0.2399 3.6385 18 1 6.0744 1.4671 5.5446 19 1 4.3835 -0.2412 5.8656 20 6 0.5414 -0.0747 5.6133 21 6 1.8990 -0.3819 6.2505 22 1 -0.3633 -1.0275 -0.0167 23 1 -0.3633 0.4993 0.8981 24 1 -0.3633 0.5282 -0.8816 25 1 3.1263 -0.7994 -1.2056 26 1 1.6054 -1.7198 -1.2952 27 1 0.5490 0.1472 -2.5390 28 1 2.0700 1.0675 -2.4493 29 1 3.1275 -0.7853 1.2132 30 1 1.6179 -1.7255 1.2867 31 1 0.6276 0.0815 2.5139 32 1 3.2949 -0.6060 3.5653 33 1 1.8212 -1.5787 3.7893 34 1 4.7863 3.6325 4.4967 35 1 -0.0395 0.7448 6.0364 36 1 -0.0389 -0.9163 5.2351 37 1 2.2111 -1.4254 6.2911 38 1 2.2115 0.2354 7.0927 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602644184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:52 Heat of formation + Delta-G solvation = 35.419738 kcal Electronic energy + Delta-G solvation = -16491.957000 eV Core-core repulsion = 13948.727708 eV Total energy + Delta-G solvation = -2543.229291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.07626 -37.17186 -36.18210 -33.58162 -31.96656 -30.28744 -26.83522 -25.84876 -24.67141 -22.58545 -21.43250 -19.90418 -18.87562 -17.64326 -16.37324 -15.82579 -15.36080 -14.69622 -14.47645 -14.08897 -13.66867 -13.53314 -13.44718 -12.86327 -12.69291 -12.54541 -12.32882 -12.08297 -11.81617 -11.75015 -11.19427 -10.96876 -10.80409 -10.64236 -10.55032 -10.46448 -10.34175 -10.04627 -9.38886 -8.99661 -8.53378 -8.32674 -7.59683 -5.96802 -3.93371 2.60685 2.64296 3.34478 3.44564 3.49666 3.82352 4.53240 4.57832 4.78298 4.85752 5.02762 5.18491 5.19656 5.35028 5.37747 5.44453 5.69062 5.75502 5.81110 5.90663 5.91056 5.98880 6.03464 6.16013 6.21036 6.23905 6.42930 6.48877 6.52101 6.59964 6.77205 7.09820 7.16113 7.41453 7.77658 7.89798 8.12511 8.64175 9.05768 9.68495 11.16123 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027111 B = 0.005571 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.531677 B = 5025.084526 C = 5459.223409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.090 0.910 4 C -0.111 4.111 5 C -0.030 4.030 6 C 0.211 3.789 7 N -0.450 5.450 8 C 0.063 3.937 9 N -0.659 5.659 10 C 0.096 3.904 11 C 0.005 3.995 12 C -0.457 4.457 13 H 0.074 0.926 14 C 0.083 3.917 15 N -0.901 5.901 16 Si 0.869 3.131 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.255 1.255 20 C -0.188 4.188 21 C -0.197 4.197 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.017 0.983 31 H 0.337 0.663 32 H 0.060 0.940 33 H 0.004 0.996 34 H 0.261 0.739 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 -7.753 -7.944 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 H 0.109 0.891 4 C -0.150 4.150 5 C -0.070 4.070 6 C -0.107 4.107 7 N -0.127 5.127 8 C -0.067 4.067 9 N -0.290 5.290 10 C -0.033 4.033 11 C 0.004 3.996 12 C -0.495 4.495 13 H 0.092 0.908 14 C -0.118 4.118 15 N -0.540 5.540 16 Si 0.698 3.302 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.179 1.179 20 C -0.225 4.225 21 C -0.235 4.235 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.155 0.845 32 H 0.078 0.922 33 H 0.022 0.978 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.678 -7.950 -9.419 13.184 hybrid contribution 0.208 -1.275 0.573 1.413 sum -4.470 -9.225 -8.847 13.540 Atomic orbital electron populations 1.21923 0.95324 1.01327 1.02382 1.21134 0.95841 1.01140 0.92592 0.89134 1.21588 1.02015 0.99090 0.92306 1.19462 1.02769 0.98982 0.85757 1.29419 0.93189 0.93596 0.94469 1.81215 1.09584 1.09907 1.11987 1.21950 1.00280 0.93871 0.90625 1.60134 1.14878 1.53312 1.00632 1.21640 0.98746 0.92671 0.90258 1.19451 0.96515 0.96142 0.87488 1.20076 0.92743 0.87469 1.49187 0.90831 1.24794 0.98272 0.94682 0.94078 1.69902 1.17732 1.16444 1.49883 0.87029 0.81568 0.82987 0.78606 1.20745 1.22428 1.17949 1.22794 0.90924 1.01606 1.07163 1.23045 1.01036 0.99219 1.00192 0.93248 0.91572 0.92581 0.90975 0.91343 0.87180 0.87008 0.91568 0.96472 0.84472 0.92152 0.97847 0.92918 0.89813 0.91497 0.91670 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.70 37.16 0.32 -1.13 16 2 C -0.09 -0.96 2.60 -90.62 -0.24 -1.20 16 3 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.11 -0.95 4.64 -26.73 -0.12 -1.08 16 5 C -0.03 -0.21 5.46 -29.52 -0.16 -0.37 16 6 C 0.21 2.15 15.43 -20.76 -0.32 1.83 16 7 N -0.45 -6.04 18.54 42.15 0.78 -5.26 16 8 C 0.06 0.89 5.15 -3.82 -0.02 0.87 16 9 N -0.66 -11.88 6.12 -113.78 -0.70 -12.57 16 10 C 0.10 1.93 5.18 -3.82 -0.02 1.91 16 11 C 0.01 0.12 1.06 -155.66 -0.16 -0.05 16 12 C -0.46 -12.36 9.09 -34.44 -0.31 -12.67 16 13 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 14 C 0.08 2.34 5.46 -17.82 -0.10 2.24 16 15 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 16 Si 0.87 21.34 25.04 -169.99 -4.26 17.09 16 17 H -0.28 -6.80 6.87 56.52 0.39 -6.41 16 18 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.26 -5.93 5.84 56.52 0.33 -5.60 16 20 C -0.19 -3.66 9.93 -26.69 -0.26 -3.93 16 21 C -0.20 -4.08 8.12 -26.69 -0.22 -4.30 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.73 6.74 -51.93 -0.35 0.39 16 24 H 0.06 0.42 6.61 -51.93 -0.34 0.08 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.11 0.57 6.58 -51.93 -0.34 0.23 16 28 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.02 8.11 -51.93 -0.42 0.59 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.34 5.61 7.16 -39.29 -0.28 5.33 16 32 H 0.06 1.31 4.95 -51.93 -0.26 1.06 16 33 H 0.00 0.06 8.09 -51.93 -0.42 -0.36 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -31.17 310.30 -6.62 -37.79 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.29 Total: 2.51 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -1.61 Total: -17.86 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.86 Total: -44.20 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.26 Total: 17.09 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.17 -6.62 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602644184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.211 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds