Wall clock time and date at job start Sun Mar 29 2020 22:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46934 * 2 1 4 4 C 1.53005 * 109.47532 * 240.00028 * 2 1 3 5 5 C 1.53001 * 109.46851 * 64.99633 * 4 2 1 6 6 C 1.47197 * 109.47113 * 180.02562 * 5 4 2 7 7 N 4.86668 * 101.55384 * 255.91431 * 2 1 3 8 8 C 1.53002 * 109.47302 * 120.00025 * 2 1 3 9 9 N 1.46896 * 109.46922 * 295.89950 * 8 2 1 10 10 C 1.46901 * 110.99932 * 185.22629 * 9 8 2 11 11 C 1.53005 * 109.47137 * 176.68337 * 10 9 8 12 12 C 1.50704 * 115.55202 * 304.91282 * 11 10 9 13 13 H 1.07994 * 120.00094 * 114.85855 * 12 11 10 14 14 C 1.37881 * 119.99363 * 295.13450 * 12 11 10 15 15 N 1.31515 * 119.99388 * 173.54165 * 14 12 11 16 16 Si 1.86792 * 120.00213 * 353.53742 * 14 12 11 17 17 H 1.48502 * 109.47191 * 88.74180 * 16 14 12 18 18 H 1.48499 * 109.47215 * 208.73899 * 16 14 12 19 19 H 1.48498 * 109.47605 * 328.74184 * 16 14 12 20 20 C 1.53001 * 117.49589 * 90.57878 * 11 10 9 21 21 C 1.52999 * 117.49581 * 159.23672 * 11 10 9 22 22 H 1.08994 * 109.46894 * 179.06868 * 1 2 3 23 23 H 1.08994 * 109.47120 * 299.07373 * 1 2 3 24 24 H 1.09002 * 109.47039 * 59.07468 * 1 2 3 25 25 H 1.08992 * 109.47336 * 184.99784 * 4 2 1 26 26 H 1.08999 * 109.46683 * 305.00351 * 4 2 1 27 27 H 1.08994 * 109.47673 * 300.00850 * 5 4 2 28 28 H 1.09007 * 109.46636 * 60.00581 * 5 4 2 29 29 H 1.08998 * 109.47105 * 175.89734 * 8 2 1 30 30 H 1.08998 * 109.46996 * 55.89759 * 8 2 1 31 31 H 1.00908 * 111.00358 * 61.27226 * 9 8 2 32 32 H 1.08996 * 109.46903 * 56.68716 * 10 9 8 33 33 H 1.08993 * 109.47265 * 296.68291 * 10 9 8 34 34 H 0.96999 * 119.99569 * 179.97438 * 15 14 12 35 35 H 1.08994 * 117.49940 * 215.00242 * 20 11 10 36 36 H 1.09001 * 117.50092 * 0.02562 * 20 11 10 37 37 H 1.08995 * 117.50229 * 359.97438 * 21 11 10 38 38 H 1.09000 * 117.49514 * 144.97673 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6353 0.0689 -2.4953 6 6 2.1255 -0.6252 -3.6972 7 7 2.5047 -1.1604 -4.6247 8 6 2.0400 -0.7213 1.2492 9 7 1.6329 0.0261 2.4466 10 6 2.2097 -0.5686 3.6597 11 6 1.8324 0.2825 4.8739 12 6 2.2034 1.7405 4.7862 13 1 1.4300 2.4938 4.7584 14 6 3.5302 2.1124 4.7358 15 7 3.8530 3.3708 4.5318 16 14 4.8690 0.8288 4.9575 17 1 5.2134 0.2399 3.6385 18 1 6.0744 1.4671 5.5446 19 1 4.3835 -0.2412 5.8656 20 6 0.5414 -0.0747 5.6133 21 6 1.8990 -0.3819 6.2505 22 1 -0.3633 -1.0275 -0.0167 23 1 -0.3633 0.4993 0.8981 24 1 -0.3633 0.5282 -0.8816 25 1 3.1263 -0.7994 -1.2056 26 1 1.6054 -1.7198 -1.2952 27 1 0.5490 0.1472 -2.5390 28 1 2.0700 1.0675 -2.4493 29 1 3.1275 -0.7853 1.2132 30 1 1.6179 -1.7255 1.2867 31 1 0.6276 0.0815 2.5139 32 1 3.2949 -0.6060 3.5653 33 1 1.8212 -1.5787 3.7893 34 1 4.7863 3.6325 4.4967 35 1 -0.0395 0.7448 6.0364 36 1 -0.0389 -0.9163 5.2351 37 1 2.2111 -1.4254 6.2911 38 1 2.2115 0.2354 7.0927 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602644184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:52 Heat of formation + Delta-G solvation = 15.132888 kcal Electronic energy + Delta-G solvation = -16492.836703 eV Core-core repulsion = 13948.727708 eV Total energy + Delta-G solvation = -2544.108995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.28111 -38.39371 -37.23741 -34.75379 -34.08610 -31.17815 -28.21415 -27.26806 -26.05298 -23.79026 -23.00452 -20.97367 -20.50838 -18.53191 -18.10730 -17.12486 -16.49085 -16.10914 -15.70799 -15.37210 -14.91617 -14.73487 -14.70151 -14.50663 -13.99320 -13.59113 -13.39197 -13.31950 -13.08493 -12.81941 -12.55264 -12.34048 -12.08754 -12.05653 -11.97679 -11.66294 -11.43796 -11.31052 -11.15215 -10.83110 -10.45888 -10.17902 -8.93312 -8.13643 -6.12664 1.38874 1.44236 1.55111 1.80789 1.86019 2.48298 3.03334 3.13927 3.38024 3.63254 4.02974 4.08825 4.27026 4.31965 4.40746 4.45022 4.53083 4.62309 4.65358 4.76037 4.80098 4.93192 4.95776 4.99918 5.02626 5.16753 5.18964 5.25270 5.29506 5.44073 5.57154 5.63693 5.67512 5.85304 6.41618 6.50033 6.64922 6.83410 6.90198 7.52400 9.03096 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027111 B = 0.005571 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.531677 B = 5025.084526 C = 5459.223409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 H 0.072 0.928 4 C -0.103 4.103 5 C -0.023 4.023 6 C 0.238 3.762 7 N -0.511 5.511 8 C 0.061 3.939 9 N -0.682 5.682 10 C 0.102 3.898 11 C -0.023 4.023 12 C -0.448 4.448 13 H 0.027 0.973 14 C 0.027 3.973 15 N -0.954 5.954 16 Si 0.928 3.072 17 H -0.276 1.276 18 H -0.306 1.306 19 H -0.230 1.230 20 C -0.166 4.166 21 C -0.194 4.194 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.343 0.657 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.259 0.741 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.940 -10.086 -8.229 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 H 0.090 0.910 4 C -0.143 4.143 5 C -0.063 4.063 6 C -0.078 4.078 7 N -0.189 5.189 8 C -0.068 4.068 9 N -0.314 5.314 10 C -0.027 4.027 11 C -0.024 4.024 12 C -0.486 4.486 13 H 0.046 0.954 14 C -0.169 4.169 15 N -0.596 5.596 16 Si 0.754 3.246 17 H -0.202 1.202 18 H -0.234 1.234 19 H -0.153 1.153 20 C -0.203 4.203 21 C -0.232 4.232 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.145 0.855 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.163 0.837 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.746 -10.310 -9.699 15.277 hybrid contribution 0.415 -0.479 0.708 0.950 sum -5.331 -10.790 -8.992 15.023 Atomic orbital electron populations 1.21909 0.93894 1.02255 1.02635 1.21027 0.96953 0.99907 0.92112 0.90964 1.21473 1.01526 0.99512 0.91758 1.19636 1.04427 0.98840 0.83380 1.29912 0.91529 0.92212 0.94137 1.81246 1.11717 1.11908 1.14019 1.22039 0.99489 0.94883 0.90427 1.60068 1.15434 1.54694 1.01216 1.21456 0.97813 0.93515 0.89911 1.19395 0.99608 0.93862 0.89540 1.20231 0.91463 0.89574 1.47334 0.95428 1.25539 1.00711 0.96303 0.94331 1.70059 1.17968 1.18799 1.52725 0.86092 0.78328 0.81044 0.79093 1.20205 1.23422 1.15310 1.22835 0.90261 1.02164 1.05056 1.23059 1.01787 1.00156 0.98171 0.92018 0.93501 0.90139 0.91832 0.90377 0.84393 0.85455 0.93208 0.94618 0.83729 0.94017 0.95100 0.93217 0.90702 0.88030 0.88977 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.70 71.98 0.63 -1.78 16 2 C -0.08 -1.60 2.60 -10.79 -0.03 -1.63 16 3 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 4 C -0.10 -1.50 4.64 30.60 0.14 -1.36 16 5 C -0.02 -0.25 5.46 28.79 0.16 -0.09 16 6 C 0.24 4.41 15.43 89.44 1.38 5.79 16 7 N -0.51 -13.28 18.54 20.00 0.37 -12.91 16 8 C 0.06 1.61 5.15 86.30 0.44 2.06 16 9 N -0.68 -23.61 6.12 -513.90 -3.14 -26.76 16 10 C 0.10 3.87 5.18 86.30 0.45 4.32 16 11 C -0.02 -0.98 1.06 -52.92 -0.06 -1.04 16 12 C -0.45 -24.65 9.09 25.60 0.23 -24.42 16 13 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 14 C 0.03 1.57 5.46 84.66 0.46 2.03 16 15 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 16 Si 0.93 44.23 25.04 68.60 1.72 45.94 16 17 H -0.28 -12.81 6.87 99.48 0.68 -12.13 16 18 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 19 H -0.23 -9.90 5.84 99.48 0.58 -9.32 16 20 C -0.17 -6.02 9.93 30.62 0.30 -5.72 16 21 C -0.19 -7.47 8.12 30.62 0.25 -7.22 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.05 0.95 6.74 -2.39 -0.02 0.93 16 24 H 0.08 0.90 6.61 -2.39 -0.02 0.88 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.14 0.82 6.58 -2.39 -0.02 0.80 16 28 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.05 1.47 8.11 -2.39 -0.02 1.45 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.34 10.88 7.16 -89.69 -0.64 10.24 16 32 H 0.04 1.72 4.95 -2.39 -0.01 1.71 16 33 H 0.03 1.00 8.09 -2.39 -0.02 0.98 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.07 2.96 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -70.04 310.30 3.85 -66.19 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.24 Total: 15.88 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 4.36 Total: -29.07 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -2.47 Total: -98.94 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.72 Total: 45.94 kcal Total: -70.04 3.85 -66.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602644184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.325 kcal (2) G-P(sol) polarization free energy of solvation -70.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds