Wall clock time and date at job start Sun Mar 29 2020 22:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47127 * 2 1 4 4 C 1.53005 * 109.46738 * 240.00323 * 2 1 3 5 5 C 1.50698 * 109.47107 * 65.00406 * 4 2 1 6 6 H 1.07994 * 120.00409 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99760 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00178 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47428 * 59.99735 * 9 7 5 11 11 H 1.48504 * 109.47502 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47209 * 299.99633 * 9 7 5 13 13 C 1.52994 * 109.46964 * 120.00397 * 2 1 3 14 14 N 1.46895 * 109.47387 * 294.99811 * 13 2 1 15 15 C 1.46901 * 111.00600 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47340 * 180.02562 * 15 14 13 17 17 C 1.47199 * 112.91002 * 48.74535 * 16 15 14 18 18 N 5.44864 * 64.47031 * 79.94478 * 2 1 3 19 19 C 1.53784 * 113.61270 * 277.49546 * 16 15 14 20 20 C 1.53779 * 87.08045 * 220.02125 * 19 16 15 21 21 C 1.53779 * 87.08402 * 25.43458 * 20 19 16 22 22 H 1.08994 * 109.47337 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47057 * 299.99945 * 1 2 3 24 24 H 1.09007 * 109.46841 * 59.99665 * 1 2 3 25 25 H 1.09004 * 109.46803 * 185.00204 * 4 2 1 26 26 H 1.08993 * 109.47089 * 304.99447 * 4 2 1 27 27 H 0.97001 * 120.00341 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47311 * 174.99701 * 13 2 1 29 29 H 1.09006 * 109.47296 * 54.99928 * 13 2 1 30 30 H 1.00902 * 111.00430 * 303.95632 * 14 13 2 31 31 H 1.08999 * 109.46814 * 59.99706 * 15 14 13 32 32 H 1.09003 * 109.46640 * 300.00231 * 15 14 13 33 33 H 1.09002 * 113.61478 * 334.57090 * 19 16 15 34 34 H 1.09004 * 113.61162 * 105.47268 * 19 16 15 35 35 H 1.09006 * 113.61307 * 270.88660 * 20 19 16 36 36 H 1.09007 * 113.61642 * 139.98417 * 20 19 16 37 37 H 1.08997 * 113.61646 * 220.02209 * 21 20 19 38 38 H 1.09000 * 113.61527 * 89.11480 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0801 0.9743 -2.3757 7 6 1.9932 -0.4015 -3.7283 8 7 2.6772 -1.5181 -3.8512 9 14 1.4985 0.5629 -5.2496 10 1 2.0896 1.9238 -5.1870 11 1 1.9946 -0.1363 -6.4621 12 1 0.0185 0.6684 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0372 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7023 0.1906 4.8892 17 6 0.2794 0.5666 4.8621 18 7 -0.8182 0.8584 4.8411 19 6 2.6442 1.3657 5.2007 20 6 2.4673 1.0111 6.6866 21 6 2.1524 -0.4220 6.2260 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.1263 -0.7995 -1.2057 26 1 1.6054 -1.7197 -1.2952 27 1 2.9250 -1.8407 -4.7318 28 1 3.1263 -0.7996 1.2055 29 1 1.6053 -1.7199 1.2950 30 1 1.9882 0.9871 2.3967 31 1 3.2127 -0.7040 3.6400 32 1 1.6920 -1.6248 3.7299 33 1 3.6605 1.2196 4.8349 34 1 2.2322 2.3385 4.9320 35 1 1.6227 1.5137 7.1579 36 1 3.3865 1.0911 7.2670 37 1 1.3435 -0.8924 6.7850 38 1 3.0343 -1.0568 6.1405 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602695366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:13 Heat of formation + Delta-G solvation = 25.035034 kcal Electronic energy + Delta-G solvation = -16301.379078 eV Core-core repulsion = 13757.699472 eV Total energy + Delta-G solvation = -2543.679606 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09137 -36.65908 -35.68948 -33.83590 -31.92187 -28.50242 -26.70496 -26.13137 -24.97279 -23.21814 -22.14889 -21.20170 -19.15007 -16.85832 -16.35211 -15.73375 -15.18522 -14.80875 -14.74319 -14.34497 -13.73998 -13.59535 -13.07720 -12.83244 -12.67740 -12.41746 -12.24519 -12.13872 -11.66020 -11.49318 -11.33114 -11.14168 -10.83516 -10.75597 -10.69007 -10.48802 -10.27351 -10.19616 -9.69067 -9.13156 -8.95188 -8.31387 -8.19034 -5.96495 -3.97512 2.73551 2.86332 3.35654 3.39795 3.42711 3.73696 4.09277 4.22899 4.43808 4.49769 4.60663 4.70929 5.13447 5.34366 5.36677 5.39320 5.40205 5.55299 5.58280 5.67252 5.69813 5.79362 5.90655 5.95361 6.16026 6.41695 6.54801 6.70235 7.00911 7.18627 7.20820 7.31799 7.58685 7.67220 7.70234 7.86264 8.03683 8.47934 9.08615 9.65829 11.15014 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.047929 B = 0.004177 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.057694 B = 6701.541434 C = 6918.140942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.690 5.690 15 C 0.076 3.924 16 C 0.007 3.993 17 C 0.245 3.755 18 N -0.432 5.432 19 C -0.124 4.124 20 C -0.144 4.144 21 C -0.118 4.118 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.339 0.661 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 2.450 19.871 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.321 5.321 15 C -0.054 4.054 16 C 0.003 3.997 17 C -0.073 4.073 18 N -0.107 5.107 19 C -0.162 4.162 20 C -0.181 4.181 21 C -0.158 4.158 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.931 2.485 19.724 19.902 hybrid contribution 1.109 0.480 -1.103 1.636 sum 2.039 2.964 18.621 18.966 Atomic orbital electron populations 1.21584 0.95760 1.00545 1.00113 1.21202 0.95961 0.98920 0.94052 0.92827 1.19114 0.95879 0.95565 0.90398 1.21204 1.34618 1.08314 0.91026 0.92647 1.25011 0.95326 0.95090 0.99066 1.69954 1.39050 1.21256 1.23473 0.86693 0.78938 0.80094 0.82485 1.20317 1.21365 1.20269 1.22152 0.97264 0.97695 0.89201 1.60524 1.64130 1.05921 1.01511 1.21923 0.97955 0.97686 0.87881 1.19252 0.84016 0.98905 0.97565 1.27882 0.93631 0.93322 0.92462 1.81183 1.12172 1.08452 1.08863 1.23073 0.99327 0.97512 0.96309 1.22904 1.02418 0.96304 0.96485 1.22996 1.02129 0.97326 0.93302 0.94202 0.94084 0.92800 0.96894 0.96566 0.93053 0.95452 0.91457 0.84361 0.93311 0.90234 0.88165 0.90496 0.90094 0.90447 0.90600 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 8.89 37.16 0.33 -2.16 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.91 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.07 1.08 5.07 -3.83 -0.02 1.06 16 14 N -0.69 -9.42 5.36 -113.78 -0.61 -10.03 16 15 C 0.08 0.78 5.14 -3.83 -0.02 0.76 16 16 C 0.01 0.06 1.03 -156.48 -0.16 -0.10 16 17 C 0.25 3.12 13.60 -20.76 -0.28 2.84 16 18 N -0.43 -6.79 18.54 42.15 0.78 -6.01 16 19 C -0.12 -0.86 7.20 -25.92 -0.19 -1.05 16 20 C -0.14 -0.86 7.79 -25.92 -0.20 -1.06 16 21 C -0.12 -0.75 7.21 -25.92 -0.19 -0.93 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 24 H 0.05 1.16 6.95 -51.93 -0.36 0.80 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.34 4.38 8.73 -39.29 -0.34 4.04 16 31 H 0.05 0.42 7.94 -51.93 -0.41 0.01 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.57 7.96 -51.93 -0.41 0.15 16 34 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.10 0.47 8.10 -51.93 -0.42 0.05 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -31.73 317.01 -7.30 -39.03 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.50 Total: -3.08 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.46 Total: -15.21 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.91 Total: -42.35 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.73 -7.30 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602695366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.064 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds