Wall clock time and date at job start Sun Mar 29 2020 22:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47127 * 2 1 4 4 C 1.53005 * 109.46738 * 240.00323 * 2 1 3 5 5 C 1.50698 * 109.47107 * 65.00406 * 4 2 1 6 6 H 1.07994 * 120.00409 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99760 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00178 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47428 * 59.99735 * 9 7 5 11 11 H 1.48504 * 109.47502 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47209 * 299.99633 * 9 7 5 13 13 C 1.52994 * 109.46964 * 120.00397 * 2 1 3 14 14 N 1.46895 * 109.47387 * 294.99811 * 13 2 1 15 15 C 1.46901 * 111.00600 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47340 * 180.02562 * 15 14 13 17 17 C 1.47199 * 112.91002 * 48.74535 * 16 15 14 18 18 N 5.44864 * 64.47031 * 79.94478 * 2 1 3 19 19 C 1.53784 * 113.61270 * 277.49546 * 16 15 14 20 20 C 1.53779 * 87.08045 * 220.02125 * 19 16 15 21 21 C 1.53779 * 87.08402 * 25.43458 * 20 19 16 22 22 H 1.08994 * 109.47337 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47057 * 299.99945 * 1 2 3 24 24 H 1.09007 * 109.46841 * 59.99665 * 1 2 3 25 25 H 1.09004 * 109.46803 * 185.00204 * 4 2 1 26 26 H 1.08993 * 109.47089 * 304.99447 * 4 2 1 27 27 H 0.97001 * 120.00341 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47311 * 174.99701 * 13 2 1 29 29 H 1.09006 * 109.47296 * 54.99928 * 13 2 1 30 30 H 1.00902 * 111.00430 * 303.95632 * 14 13 2 31 31 H 1.08999 * 109.46814 * 59.99706 * 15 14 13 32 32 H 1.09003 * 109.46640 * 300.00231 * 15 14 13 33 33 H 1.09002 * 113.61478 * 334.57090 * 19 16 15 34 34 H 1.09004 * 113.61162 * 105.47268 * 19 16 15 35 35 H 1.09006 * 113.61307 * 270.88660 * 20 19 16 36 36 H 1.09007 * 113.61642 * 139.98417 * 20 19 16 37 37 H 1.08997 * 113.61646 * 220.02209 * 21 20 19 38 38 H 1.09000 * 113.61527 * 89.11480 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0801 0.9743 -2.3757 7 6 1.9932 -0.4015 -3.7283 8 7 2.6772 -1.5181 -3.8512 9 14 1.4985 0.5629 -5.2496 10 1 2.0896 1.9238 -5.1870 11 1 1.9946 -0.1363 -6.4621 12 1 0.0185 0.6684 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0372 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7023 0.1906 4.8892 17 6 0.2794 0.5666 4.8621 18 7 -0.8182 0.8584 4.8411 19 6 2.6442 1.3657 5.2007 20 6 2.4673 1.0111 6.6866 21 6 2.1524 -0.4220 6.2260 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.1263 -0.7995 -1.2057 26 1 1.6054 -1.7197 -1.2952 27 1 2.9250 -1.8407 -4.7318 28 1 3.1263 -0.7996 1.2055 29 1 1.6053 -1.7199 1.2950 30 1 1.9882 0.9871 2.3967 31 1 3.2127 -0.7040 3.6400 32 1 1.6920 -1.6248 3.7299 33 1 3.6605 1.2196 4.8349 34 1 2.2322 2.3385 4.9320 35 1 1.6227 1.5137 7.1579 36 1 3.3865 1.0911 7.2670 37 1 1.3435 -0.8924 6.7850 38 1 3.0343 -1.0568 6.1405 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602695366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:13 Heat of formation + Delta-G solvation = 5.658145 kcal Electronic energy + Delta-G solvation = -16302.219323 eV Core-core repulsion = 13757.699472 eV Total energy + Delta-G solvation = -2544.519851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76963 -38.09899 -36.71697 -35.45160 -33.78068 -29.67693 -28.51661 -26.73212 -26.35680 -24.58991 -23.49588 -21.82371 -20.81777 -18.48579 -17.60364 -16.60225 -16.57200 -16.20447 -15.73175 -15.52693 -15.11314 -14.73401 -14.47777 -14.03990 -13.80173 -13.67438 -13.44508 -13.24121 -13.06904 -12.93712 -12.76247 -12.55301 -12.37921 -12.21983 -11.96617 -11.64717 -11.48989 -11.34557 -11.14826 -11.07875 -10.78849 -10.52029 -9.27511 -8.16931 -6.25642 1.40099 1.42453 1.50161 1.80574 1.89383 2.42333 2.92707 3.16428 3.23599 3.62239 3.80381 3.95639 3.98184 4.18767 4.34082 4.52354 4.54709 4.71374 4.81327 4.89087 4.91845 4.93243 4.96961 5.01311 5.12404 5.16588 5.21396 5.28603 5.44363 5.47460 5.48869 5.55957 5.81633 5.90147 6.08876 6.33058 6.53374 6.71020 6.90046 7.42396 8.94758 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.047929 B = 0.004177 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.057694 B = 6701.541434 C = 6918.140942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 H 0.054 0.946 4 C 0.034 3.966 5 C -0.532 4.532 6 H 0.057 0.943 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.081 3.919 14 N -0.700 5.700 15 C 0.077 3.923 16 C -0.002 4.002 17 C 0.264 3.736 18 N -0.494 5.494 19 C -0.118 4.118 20 C -0.139 4.139 21 C -0.108 4.108 22 H 0.032 0.968 23 H 0.055 0.945 24 H 0.035 0.965 25 H -0.008 1.008 26 H -0.011 1.011 27 H 0.262 0.738 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.344 0.656 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 3.092 20.921 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.196 1.196 13 C -0.048 4.048 14 N -0.331 5.331 15 C -0.053 4.053 16 C -0.006 4.006 17 C -0.053 4.053 18 N -0.170 5.170 19 C -0.157 4.157 20 C -0.177 4.177 21 C -0.146 4.146 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.011 0.989 26 H 0.007 0.993 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.991 3.138 20.798 21.127 hybrid contribution 0.800 0.259 -1.393 1.627 sum 2.791 3.397 19.405 19.896 Atomic orbital electron populations 1.21464 0.95618 1.00018 0.99842 1.21020 0.95895 0.98668 0.93776 0.92723 1.18997 0.94398 0.94535 0.92462 1.21619 1.34466 1.08598 0.92291 0.92457 1.25901 0.95262 0.96077 1.02473 1.70081 1.40176 1.22842 1.24331 0.85610 0.78774 0.78917 0.78413 1.19188 1.20856 1.19617 1.21804 0.97252 0.97000 0.88790 1.60421 1.64850 1.06202 1.01632 1.22024 0.99504 0.97325 0.86443 1.19567 0.82069 1.00517 0.98469 1.28683 0.94317 0.91630 0.90653 1.81190 1.14203 1.10664 1.10935 1.23146 0.99584 0.96019 0.96927 1.22882 1.02996 0.95736 0.96054 1.23065 1.02848 0.97844 0.90887 0.94834 0.92603 0.94631 0.98919 0.99256 0.92908 0.94910 0.92135 0.83742 0.90579 0.90552 0.86008 0.91475 0.91283 0.88297 0.90947 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 8.89 71.98 0.64 -3.90 16 2 C -0.07 -3.04 2.48 -10.79 -0.03 -3.06 16 3 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.29 8.41 25.60 0.22 -30.07 16 6 H 0.06 3.17 7.06 -2.91 -0.02 3.15 16 7 C 0.00 0.02 5.46 84.65 0.46 0.48 16 8 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 9 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 C 0.08 2.58 5.07 86.30 0.44 3.02 16 14 N -0.70 -17.87 5.36 -513.90 -2.75 -20.62 16 15 C 0.08 1.37 5.14 86.30 0.44 1.81 16 16 C 0.00 -0.04 1.03 -53.46 -0.06 -0.09 16 17 C 0.26 6.51 13.60 89.44 1.22 7.72 16 18 N -0.49 -15.62 18.54 20.00 0.37 -15.25 16 19 C -0.12 -1.29 7.20 31.12 0.22 -1.07 16 20 C -0.14 -1.25 7.79 31.12 0.24 -1.01 16 21 C -0.11 -1.01 7.21 31.12 0.22 -0.79 16 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 2.08 7.75 -2.39 -0.02 2.06 16 24 H 0.03 1.53 6.95 -2.38 -0.02 1.51 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 2.02 8.14 -2.38 -0.02 2.01 16 30 H 0.34 8.21 8.73 -89.69 -0.78 7.42 16 31 H 0.08 1.01 7.94 -2.39 -0.02 0.99 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.12 0.86 7.96 -2.39 -0.02 0.84 16 34 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 35 H 0.07 0.80 8.13 -2.38 -0.02 0.78 16 36 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 38 H 0.13 0.60 8.10 -2.39 -0.02 0.58 16 Total: -1.00 -69.62 317.01 4.33 -65.29 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.24 Total: 5.50 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 4.16 Total: -25.06 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -2.10 Total: -92.57 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -69.62 4.33 -65.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602695366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.952 kcal (2) G-P(sol) polarization free energy of solvation -69.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds