Wall clock time and date at job start Sun Mar 29 2020 21:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00399 * 2 1 4 4 C 1.52999 * 109.47700 * 194.34455 * 3 2 1 5 5 C 1.53006 * 109.46786 * 273.55176 * 4 3 2 6 6 C 1.52996 * 109.46723 * 33.54982 * 4 3 2 7 7 C 1.47199 * 109.47479 * 153.55372 * 4 3 2 8 8 N 4.73373 * 124.56938 * 338.32738 * 2 1 3 9 9 C 1.46900 * 111.00044 * 123.95459 * 2 1 3 10 10 C 1.52999 * 109.47482 * 46.03782 * 9 2 1 11 11 C 1.50697 * 115.54799 * 59.04099 * 10 9 2 12 12 H 1.08011 * 120.00035 * 246.12943 * 11 10 9 13 13 C 1.37877 * 120.00222 * 65.85950 * 11 10 9 14 14 N 1.31514 * 119.99773 * 6.72495 * 13 11 10 15 15 Si 1.86802 * 120.00198 * 186.73318 * 13 11 10 16 16 H 1.48498 * 109.47436 * 89.99426 * 15 13 11 17 17 H 1.48499 * 109.46876 * 209.99666 * 15 13 11 18 18 H 1.48501 * 109.46847 * 329.99472 * 15 13 11 19 19 C 1.52999 * 117.49982 * 204.71456 * 10 9 2 20 20 C 1.53002 * 117.50056 * 273.37452 * 10 9 2 21 21 H 1.08994 * 109.47236 * 299.48774 * 1 2 3 22 22 H 1.08997 * 109.47261 * 59.49229 * 1 2 3 23 23 H 1.08998 * 109.47021 * 179.49163 * 1 2 3 24 24 H 1.09005 * 109.46681 * 314.34410 * 3 2 1 25 25 H 1.08997 * 109.47112 * 74.33784 * 3 2 1 26 26 H 1.08998 * 109.46925 * 51.45432 * 5 4 3 27 27 H 1.08998 * 109.46674 * 171.45177 * 5 4 3 28 28 H 1.08996 * 109.47200 * 291.45115 * 5 4 3 29 29 H 1.08998 * 109.47313 * 65.60977 * 6 4 3 30 30 H 1.09004 * 109.46733 * 185.60200 * 6 4 3 31 31 H 1.08996 * 109.47639 * 305.60444 * 6 4 3 32 32 H 1.09003 * 109.47130 * 286.03817 * 9 2 1 33 33 H 1.08997 * 109.47665 * 166.03994 * 9 2 1 34 34 H 0.96997 * 120.00017 * 184.98490 * 14 13 11 35 35 H 1.09009 * 117.49519 * 214.99791 * 19 10 9 36 36 H 1.08997 * 117.50131 * 0.02562 * 19 10 9 37 37 H 1.09000 * 117.49659 * 359.97189 * 20 10 9 38 38 H 1.08995 * 117.50185 * 144.96436 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.4830 1.3467 -0.3574 5 6 4.3085 1.1216 0.9111 6 6 3.7506 0.2120 -1.3481 7 6 3.8623 2.6312 -0.9681 8 7 4.1549 3.6224 -1.4395 9 6 1.9954 -0.7660 1.1376 10 6 1.2434 -2.0936 1.2503 11 6 1.3200 -2.9887 0.0404 12 1 0.4301 -3.1955 -0.5356 13 6 2.5272 -3.5393 -0.3345 14 7 3.5839 -3.3929 0.4347 15 14 2.6620 -4.4928 -1.9352 16 1 3.0263 -3.5644 -3.0354 17 1 3.7088 -5.5377 -1.8022 18 1 1.3580 -5.1345 -2.2404 19 6 1.1978 -2.7652 2.6243 20 6 -0.0585 -2.1021 2.0540 21 1 -0.3633 0.5058 0.8945 22 1 -0.3633 0.5217 -0.8854 23 1 -0.3633 -1.0276 -0.0091 24 1 1.4551 1.9680 -0.7350 25 1 1.8668 1.8100 0.9895 26 1 3.9257 0.2513 1.4440 27 1 5.3509 0.9527 0.6409 28 1 4.2371 2.0005 1.5518 29 1 3.2412 0.4229 -2.2884 30 1 4.8229 0.1306 -1.5262 31 1 3.3785 -0.7258 -0.9358 32 1 1.8606 -0.1930 2.0550 33 1 3.0567 -0.9615 0.9841 34 1 4.4486 -3.7170 0.1377 35 1 1.2231 -3.8547 2.6530 36 1 1.7031 -2.2611 3.4480 37 1 -0.3790 -1.1619 2.5028 38 1 -0.8597 -2.7547 1.7074 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602832553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:35 Heat of formation + Delta-G solvation = 60.733986 kcal Electronic energy + Delta-G solvation = -17774.966576 eV Core-core repulsion = 15232.834993 eV Total energy + Delta-G solvation = -2542.131583 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.94699 -36.95781 -35.26927 -33.11551 -31.93020 -27.38746 -26.79795 -26.42341 -25.37769 -22.77865 -21.12269 -20.71777 -18.97092 -16.81085 -15.96457 -15.03339 -14.77178 -14.53822 -14.19141 -13.64381 -13.56558 -13.13187 -12.92680 -12.58619 -12.51621 -12.09187 -11.74019 -11.67331 -11.32225 -11.26541 -10.98150 -10.84904 -10.76650 -10.57613 -10.46595 -10.39495 -10.32966 -10.01019 -9.31333 -8.96240 -8.40080 -8.05039 -7.46685 -5.99966 -4.00965 2.96093 3.00296 3.34574 3.41463 3.44427 4.07177 4.45993 4.72474 5.07510 5.18054 5.26852 5.40652 5.44244 5.77699 5.82249 5.96389 6.01840 6.09010 6.17640 6.18280 6.29387 6.34015 6.42225 6.49212 6.52663 6.58013 6.67114 6.72929 6.97967 7.07363 7.19898 7.39839 7.50242 7.76588 7.84531 7.93200 7.98805 8.46397 8.94802 9.62003 11.09358 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.009946 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.177312 B = 2814.453256 C = 3445.127276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.511 5.511 3 C 0.066 3.934 4 C 0.036 3.964 5 C -0.156 4.156 6 C -0.134 4.134 7 C 0.229 3.771 8 N -0.459 5.459 9 C 0.088 3.912 10 C 0.056 3.944 11 C -0.471 4.471 12 H 0.057 0.943 13 C 0.077 3.923 14 N -0.881 5.881 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.277 1.277 19 C -0.174 4.174 20 C -0.216 4.216 21 H 0.008 0.992 22 H 0.048 0.952 23 H 0.093 0.907 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.121 0.879 32 H 0.000 1.000 33 H 0.105 0.895 34 H 0.259 0.741 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 5.311 1.419 5.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.234 5.234 3 C -0.064 4.064 4 C 0.032 3.968 5 C -0.213 4.213 6 C -0.193 4.193 7 C -0.089 4.089 8 N -0.134 5.134 9 C -0.038 4.038 10 C 0.055 3.945 11 C -0.508 4.508 12 H 0.075 0.925 13 C -0.125 4.125 14 N -0.519 5.519 15 Si 0.709 3.291 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.202 1.202 19 C -0.213 4.213 20 C -0.253 4.253 21 H 0.027 0.973 22 H 0.067 0.933 23 H 0.112 0.888 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.139 0.861 32 H 0.018 0.982 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.896 6.486 0.305 6.555 hybrid contribution -0.209 -0.364 0.086 0.429 sum -1.105 6.122 0.391 6.233 Atomic orbital electron populations 1.22435 0.87825 1.03665 0.97949 1.61938 1.07431 1.09355 1.44714 1.22072 0.92254 0.92251 0.99850 1.18354 0.96636 0.85395 0.96390 1.22282 1.00031 1.03579 0.95441 1.21908 1.00299 0.99393 0.97651 1.29487 0.92485 0.94241 0.92651 1.81124 1.09653 1.12298 1.10327 1.22056 1.01865 0.92475 0.87420 1.18876 0.91597 0.93023 0.91007 1.20274 0.94481 1.26666 1.09419 0.92510 1.24792 0.96110 0.95541 0.96039 1.69969 0.99540 1.47344 1.35014 0.86775 0.77627 0.79842 0.84856 1.20399 1.21660 1.20209 1.22757 1.00245 0.99142 0.99149 1.23030 0.92954 1.00741 1.08599 0.97320 0.93335 0.88811 0.91164 0.94532 0.88386 0.91872 0.92813 0.92730 0.93618 0.86090 0.98206 0.87752 0.93154 0.90210 0.92100 0.91933 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 8.37 60.06 0.50 0.99 16 2 N -0.51 -9.05 3.25 -242.93 -0.79 -9.84 16 3 C 0.07 1.00 4.50 -3.83 -0.02 0.98 16 4 C 0.04 0.54 0.69 -157.30 -0.11 0.44 16 5 C -0.16 -2.18 8.11 37.16 0.30 -1.88 16 6 C -0.13 -2.23 7.90 37.16 0.29 -1.93 16 7 C 0.23 3.61 13.68 -20.76 -0.28 3.32 16 8 N -0.46 -7.97 18.54 42.15 0.78 -7.19 16 9 C 0.09 1.72 3.12 -3.82 -0.01 1.71 16 10 C 0.06 1.21 0.54 -155.66 -0.08 1.12 16 11 C -0.47 -11.48 7.94 -34.44 -0.27 -11.76 16 12 H 0.06 1.42 7.82 -52.48 -0.41 1.01 16 13 C 0.08 1.92 5.39 -17.82 -0.10 1.83 16 14 N -0.88 -22.29 12.48 55.43 0.69 -21.60 16 15 Si 0.88 19.92 29.55 -169.99 -5.02 14.90 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C -0.17 -3.73 9.95 -26.69 -0.27 -4.00 16 20 C -0.22 -4.25 7.90 -26.69 -0.21 -4.46 16 21 H 0.01 0.13 7.89 -51.93 -0.41 -0.28 16 22 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 23 H 0.09 1.75 5.18 -51.93 -0.27 1.48 16 24 H 0.07 1.01 7.71 -51.93 -0.40 0.61 16 25 H 0.04 0.53 7.67 -51.93 -0.40 0.13 16 26 H 0.10 1.52 4.50 -51.93 -0.23 1.29 16 27 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 28 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 31 H 0.12 2.38 5.51 -51.93 -0.29 2.10 16 32 H 0.00 0.00 7.87 -51.93 -0.41 -0.41 16 33 H 0.10 2.18 3.88 -51.93 -0.20 1.98 16 34 H 0.26 6.38 8.32 -40.82 -0.34 6.04 16 35 H 0.08 1.81 8.14 -51.92 -0.42 1.39 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.13 7.81 -51.93 -0.41 0.72 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 302.34 15.07 4.56 4.56 Total: -1.00 -25.25 302.34 -5.97 -31.22 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.93 Total: 1.59 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.25 Total: -13.63 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.68 Total: -38.62 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -25.25 -5.97 -31.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602832553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.950 kcal (2) G-P(sol) polarization free energy of solvation -25.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds