Wall clock time and date at job start Sun Mar 29 2020 21:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00399 * 2 1 4 4 C 1.52999 * 109.47700 * 194.34455 * 3 2 1 5 5 C 1.53006 * 109.46786 * 273.55176 * 4 3 2 6 6 C 1.52996 * 109.46723 * 33.54982 * 4 3 2 7 7 C 1.47199 * 109.47479 * 153.55372 * 4 3 2 8 8 N 4.73373 * 124.56938 * 338.32738 * 2 1 3 9 9 C 1.46900 * 111.00044 * 123.95459 * 2 1 3 10 10 C 1.52999 * 109.47482 * 46.03782 * 9 2 1 11 11 C 1.50697 * 115.54799 * 59.04099 * 10 9 2 12 12 H 1.08011 * 120.00035 * 246.12943 * 11 10 9 13 13 C 1.37877 * 120.00222 * 65.85950 * 11 10 9 14 14 N 1.31514 * 119.99773 * 6.72495 * 13 11 10 15 15 Si 1.86802 * 120.00198 * 186.73318 * 13 11 10 16 16 H 1.48498 * 109.47436 * 89.99426 * 15 13 11 17 17 H 1.48499 * 109.46876 * 209.99666 * 15 13 11 18 18 H 1.48501 * 109.46847 * 329.99472 * 15 13 11 19 19 C 1.52999 * 117.49982 * 204.71456 * 10 9 2 20 20 C 1.53002 * 117.50056 * 273.37452 * 10 9 2 21 21 H 1.08994 * 109.47236 * 299.48774 * 1 2 3 22 22 H 1.08997 * 109.47261 * 59.49229 * 1 2 3 23 23 H 1.08998 * 109.47021 * 179.49163 * 1 2 3 24 24 H 1.09005 * 109.46681 * 314.34410 * 3 2 1 25 25 H 1.08997 * 109.47112 * 74.33784 * 3 2 1 26 26 H 1.08998 * 109.46925 * 51.45432 * 5 4 3 27 27 H 1.08998 * 109.46674 * 171.45177 * 5 4 3 28 28 H 1.08996 * 109.47200 * 291.45115 * 5 4 3 29 29 H 1.08998 * 109.47313 * 65.60977 * 6 4 3 30 30 H 1.09004 * 109.46733 * 185.60200 * 6 4 3 31 31 H 1.08996 * 109.47639 * 305.60444 * 6 4 3 32 32 H 1.09003 * 109.47130 * 286.03817 * 9 2 1 33 33 H 1.08997 * 109.47665 * 166.03994 * 9 2 1 34 34 H 0.96997 * 120.00017 * 184.98490 * 14 13 11 35 35 H 1.09009 * 117.49519 * 214.99791 * 19 10 9 36 36 H 1.08997 * 117.50131 * 0.02562 * 19 10 9 37 37 H 1.09000 * 117.49659 * 359.97189 * 20 10 9 38 38 H 1.08995 * 117.50185 * 144.96436 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.4830 1.3467 -0.3574 5 6 4.3085 1.1216 0.9111 6 6 3.7506 0.2120 -1.3481 7 6 3.8623 2.6312 -0.9681 8 7 4.1549 3.6224 -1.4395 9 6 1.9954 -0.7660 1.1376 10 6 1.2434 -2.0936 1.2503 11 6 1.3200 -2.9887 0.0404 12 1 0.4301 -3.1955 -0.5356 13 6 2.5272 -3.5393 -0.3345 14 7 3.5839 -3.3929 0.4347 15 14 2.6620 -4.4928 -1.9352 16 1 3.0263 -3.5644 -3.0354 17 1 3.7088 -5.5377 -1.8022 18 1 1.3580 -5.1345 -2.2404 19 6 1.1978 -2.7652 2.6243 20 6 -0.0585 -2.1021 2.0540 21 1 -0.3633 0.5058 0.8945 22 1 -0.3633 0.5217 -0.8854 23 1 -0.3633 -1.0276 -0.0091 24 1 1.4551 1.9680 -0.7350 25 1 1.8668 1.8100 0.9895 26 1 3.9257 0.2513 1.4440 27 1 5.3509 0.9527 0.6409 28 1 4.2371 2.0005 1.5518 29 1 3.2412 0.4229 -2.2884 30 1 4.8229 0.1306 -1.5262 31 1 3.3785 -0.7258 -0.9358 32 1 1.8606 -0.1930 2.0550 33 1 3.0567 -0.9615 0.9841 34 1 4.4486 -3.7170 0.1377 35 1 1.2231 -3.8547 2.6530 36 1 1.7031 -2.2611 3.4480 37 1 -0.3790 -1.1619 2.5028 38 1 -0.8597 -2.7547 1.7074 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602832553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:34 Heat of formation + Delta-G solvation = 48.646040 kcal Electronic energy + Delta-G solvation = -17775.490749 eV Core-core repulsion = 15232.834993 eV Total energy + Delta-G solvation = -2542.655756 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30170 -38.42731 -36.68242 -34.47319 -33.78488 -28.77342 -28.11042 -27.70261 -27.19570 -24.15042 -22.75285 -22.04238 -20.67311 -18.18800 -17.59012 -16.51457 -16.20769 -16.09996 -15.72967 -15.07794 -14.97380 -14.53023 -14.22690 -14.05175 -13.82319 -13.45164 -13.26431 -13.14050 -12.83301 -12.72044 -12.59732 -12.44317 -12.22268 -12.15121 -11.95662 -11.79898 -11.72338 -11.47486 -10.98476 -10.75149 -10.15866 -9.75728 -8.80381 -7.89904 -5.92963 1.51750 1.56653 1.60176 1.70132 1.74263 2.59436 2.79580 3.30073 3.46939 3.76027 3.87227 4.01514 4.19364 4.42033 4.54687 4.66053 4.68551 4.79333 4.84009 4.87762 4.92095 4.98605 5.03250 5.07570 5.12023 5.15791 5.26276 5.33283 5.39485 5.55606 5.71425 5.76451 5.88233 6.08553 6.43153 6.52312 6.59084 6.69124 7.05691 7.70591 9.18236 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.009946 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.177312 B = 2814.453256 C = 3445.127276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.525 5.525 3 C 0.068 3.932 4 C 0.044 3.956 5 C -0.152 4.152 6 C -0.130 4.130 7 C 0.249 3.751 8 N -0.484 5.484 9 C 0.101 3.899 10 C 0.038 3.962 11 C -0.476 4.476 12 H 0.043 0.957 13 C 0.047 3.953 14 N -0.897 5.897 15 Si 0.922 3.078 16 H -0.276 1.276 17 H -0.295 1.295 18 H -0.281 1.281 19 C -0.185 4.185 20 C -0.191 4.191 21 H 0.022 0.978 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.009 0.991 33 H 0.090 0.910 34 H 0.257 0.743 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 6.601 1.606 7.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.248 5.248 3 C -0.062 4.062 4 C 0.040 3.960 5 C -0.210 4.210 6 C -0.188 4.188 7 C -0.069 4.069 8 N -0.160 5.160 9 C -0.026 4.026 10 C 0.037 3.963 11 C -0.514 4.514 12 H 0.061 0.939 13 C -0.154 4.154 14 N -0.535 5.535 15 Si 0.750 3.250 16 H -0.202 1.202 17 H -0.221 1.221 18 H -0.206 1.206 19 C -0.224 4.224 20 C -0.229 4.229 21 H 0.040 0.960 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.027 0.973 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.276 7.777 0.489 7.896 hybrid contribution -0.132 -0.796 0.021 0.808 sum -1.408 6.980 0.510 7.139 Atomic orbital electron populations 1.22376 0.87180 1.02639 0.99392 1.61844 1.08106 1.10779 1.44113 1.22102 0.92047 0.90992 1.01059 1.18286 0.97023 0.84359 0.96308 1.22240 1.00012 1.03771 0.95005 1.21784 1.00550 0.98660 0.97800 1.29428 0.91667 0.93864 0.91900 1.81156 1.10556 1.13142 1.11103 1.21812 1.00716 0.91629 0.88410 1.18963 0.93527 0.93824 0.89993 1.20425 0.93833 1.26918 1.10193 0.93908 1.25182 0.96191 0.96318 0.97672 1.70027 0.99573 1.48217 1.35700 0.86138 0.76992 0.78847 0.83008 1.20204 1.22143 1.20607 1.22710 1.02033 0.98047 0.99566 1.22988 0.91915 1.01145 1.06805 0.95998 0.91720 0.91058 0.90067 0.92994 0.89747 0.91389 0.90954 0.92833 0.93017 0.88874 0.97288 0.89215 0.93409 0.92410 0.91002 0.89694 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 8.37 127.69 1.07 2.06 16 2 N -0.53 -17.61 3.25 -922.49 -3.00 -20.61 16 3 C 0.07 1.86 4.50 86.30 0.39 2.25 16 4 C 0.04 1.24 0.69 -53.99 -0.04 1.20 16 5 C -0.15 -3.95 8.11 71.98 0.58 -3.37 16 6 C -0.13 -4.15 7.90 71.98 0.57 -3.58 16 7 C 0.25 7.26 13.68 89.44 1.22 8.49 16 8 N -0.48 -15.84 18.54 20.00 0.37 -15.47 16 9 C 0.10 3.81 3.12 86.30 0.27 4.08 16 10 C 0.04 1.60 0.54 -52.93 -0.03 1.57 16 11 C -0.48 -23.22 7.94 25.60 0.20 -23.02 16 12 H 0.04 2.16 7.82 -2.90 -0.02 2.14 16 13 C 0.05 2.32 5.39 84.65 0.46 2.78 16 14 N -0.90 -45.54 12.48 21.45 0.27 -45.28 16 15 Si 0.92 41.01 29.55 68.60 2.03 43.04 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 C -0.19 -7.80 9.95 30.62 0.30 -7.49 16 20 C -0.19 -7.23 7.90 30.62 0.24 -6.98 16 21 H 0.02 0.61 7.89 -2.39 -0.02 0.59 16 22 H 0.06 1.78 8.08 -2.39 -0.02 1.76 16 23 H 0.07 2.55 5.18 -2.39 -0.01 2.54 16 24 H 0.08 2.08 7.71 -2.38 -0.02 2.06 16 25 H 0.05 1.31 7.67 -2.39 -0.02 1.29 16 26 H 0.08 2.49 4.50 -2.39 -0.01 2.48 16 27 H 0.07 1.68 8.11 -2.39 -0.02 1.66 16 28 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 31 H 0.09 3.62 5.51 -2.39 -0.01 3.61 16 32 H 0.01 0.32 7.87 -2.39 -0.02 0.30 16 33 H 0.09 3.68 3.88 -2.39 -0.01 3.67 16 34 H 0.26 12.73 8.32 -92.71 -0.77 11.96 16 35 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 36 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.08 2.82 7.81 -2.39 -0.02 2.80 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -52.26 302.34 5.94 -46.32 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 1.03 Total: 14.01 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 5.24 Total: -22.01 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -2.36 Total: -81.35 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -52.26 5.94 -46.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602832553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.962 kcal (2) G-P(sol) polarization free energy of solvation -52.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds