Wall clock time and date at job start Sun Mar 29 2020 22:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86808 * 119.99790 * 2 1 4 4 H 1.48500 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47254 * 300.00502 * 3 2 1 6 6 H 1.48501 * 109.46941 * 60.00482 * 3 2 1 7 7 C 1.38994 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99988 * 179.97438 * 7 2 1 9 9 N 1.36856 * 120.00269 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00580 * 180.02562 * 9 7 2 11 11 O 1.21791 * 119.99776 * 0.02562 * 10 9 7 12 12 C 1.46284 * 120.00669 * 179.97438 * 10 9 7 13 13 C 1.36018 * 125.00619 * 179.97438 * 12 10 9 14 14 C 1.38664 * 115.19468 * 180.02562 * 13 12 10 15 15 O 1.36646 * 139.74077 * 179.97438 * 14 13 12 16 16 C 1.34067 * 109.73471 * 179.97438 * 15 14 13 17 17 C 1.34260 * 109.49300 * 359.97438 * 16 15 14 18 18 C 1.38095 * 113.39194 * 359.97438 * 14 13 12 19 19 S 1.75649 * 124.99704 * 359.97438 * 12 10 9 20 20 H 0.97003 * 119.99946 * 359.97438 * 1 2 3 21 21 H 0.97004 * 119.99939 * 359.97438 * 9 7 2 22 22 H 1.08008 * 122.40231 * 359.97438 * 13 12 10 23 23 H 1.08005 * 125.25539 * 180.02562 * 16 15 14 24 24 H 1.08004 * 126.51290 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8892 2.3966 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0090 -1.2037 -0.0005 8 1 3.0890 -1.2037 -0.0010 9 7 1.3248 -2.3890 -0.0005 10 6 1.9987 -3.5561 -0.0005 11 8 3.2166 -3.5561 -0.0001 12 6 1.2674 -4.8230 0.0000 13 6 1.8422 -6.0558 -0.0004 14 6 0.9545 -7.1210 -0.0003 15 8 0.9653 -8.4874 -0.0009 16 6 -0.2930 -8.9501 0.0003 17 6 -1.1503 -7.9168 0.0023 18 6 -0.3702 -6.7308 0.0008 19 16 -0.4824 -4.9762 0.0014 20 1 -0.4850 0.8401 0.0004 21 1 0.3548 -2.3890 0.0002 22 1 2.9133 -6.1949 -0.0017 23 1 -0.5738 -9.9930 0.0005 24 1 -2.2287 -7.9765 0.0041 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609874880.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:36 Heat of formation + Delta-G solvation = 4.341407 kcal Electronic energy + Delta-G solvation = -13620.115259 eV Core-core repulsion = 11013.073236 eV Total energy + Delta-G solvation = -2607.042024 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.22713 -38.38098 -35.52418 -34.09979 -32.28967 -31.50665 -28.39002 -25.53567 -23.47475 -22.22652 -20.37632 -19.14634 -18.24885 -17.97332 -16.16907 -15.97897 -15.09887 -14.89068 -14.60595 -14.00039 -13.73853 -13.27829 -12.87934 -12.50231 -11.75694 -11.75662 -11.69341 -11.22600 -10.68921 -10.47458 -10.39684 -10.01745 -9.73543 -8.73832 -8.26698 -8.07952 -7.75549 -6.69945 -4.00518 0.73743 1.62305 2.24127 2.33597 2.68159 2.88993 3.09716 3.16370 3.23921 3.99141 4.09584 4.69187 4.82006 5.05646 5.12693 5.36472 5.66679 5.93251 6.02411 6.20006 6.40528 6.45977 7.08982 7.30095 7.79676 8.32621 8.90187 9.22493 9.77843 10.46013 Molecular weight = 237.02amu Principal moments of inertia in cm(-1) A = 0.062215 B = 0.005941 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.941587 B = 4711.752144 C = 5151.852397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.024 3.976 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.290 4.290 8 H 0.114 0.886 9 N -0.534 5.534 10 C 0.488 3.512 11 O -0.585 6.585 12 C -0.163 4.163 13 C -0.082 4.082 14 C 0.022 3.978 15 O -0.171 6.171 16 C -0.012 4.012 17 C -0.170 4.170 18 C -0.252 4.252 19 S 0.182 5.818 20 H 0.279 0.721 21 H 0.393 0.607 22 H 0.155 0.845 23 H 0.208 0.792 24 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 -11.294 0.002 12.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.420 4.420 8 H 0.132 0.868 9 N -0.167 5.167 10 C 0.275 3.725 11 O -0.472 6.472 12 C -0.284 4.284 13 C -0.115 4.115 14 C -0.035 4.035 15 O -0.070 6.070 16 C -0.081 4.081 17 C -0.193 4.193 18 C -0.370 4.370 19 S 0.445 5.555 20 H 0.089 0.911 21 H 0.228 0.772 22 H 0.172 0.828 23 H 0.225 0.775 24 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.260 -10.175 0.003 11.454 hybrid contribution 0.569 -0.330 0.000 0.658 sum -4.691 -10.505 0.003 11.504 Atomic orbital electron populations 1.69622 1.06262 1.29112 1.46884 1.25484 0.95776 1.00415 0.96400 0.85644 0.79823 0.80010 0.78044 1.18759 1.20317 1.20323 1.19973 0.94001 0.81761 1.46285 0.86842 1.41888 1.09351 1.04786 1.60665 1.16327 0.87113 0.81606 0.87467 1.90691 1.12275 1.86075 1.58178 1.24494 0.95994 0.98026 1.09868 1.18857 1.00368 0.86562 1.05702 1.19377 0.93597 0.81919 1.08613 1.84295 1.29511 1.18541 1.74680 1.23905 0.80231 0.99493 1.04461 1.20874 1.00199 0.88933 1.09266 1.24015 0.97398 0.99760 1.15858 1.83992 1.02766 0.94441 1.74285 0.91111 0.77236 0.82766 0.77504 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.92 13.05 55.50 0.72 -22.20 14 2 C 0.02 0.62 5.50 -17.46 -0.10 0.52 14 3 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 14 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 14 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 14 6 H -0.28 -5.79 7.11 56.52 0.40 -5.38 14 7 C -0.29 -7.89 9.67 -15.03 -0.15 -8.03 14 8 H 0.11 3.19 7.15 -52.49 -0.38 2.81 14 9 N -0.53 -13.77 5.27 -12.29 -0.06 -13.84 14 10 C 0.49 12.27 7.72 -13.03 -0.10 12.17 14 11 O -0.58 -16.43 16.35 5.11 0.08 -16.35 14 12 C -0.16 -3.43 6.39 -37.15 -0.24 -3.67 14 13 C -0.08 -1.58 9.88 -40.22 -0.40 -1.98 14 14 C 0.02 0.38 7.79 -39.48 -0.31 0.08 14 15 O -0.17 -2.61 10.72 -0.73 -0.01 -2.62 14 16 C -0.01 -0.13 12.00 29.33 0.35 0.22 14 17 C -0.17 -2.20 10.91 -39.56 -0.43 -2.63 14 18 C -0.25 -4.21 7.35 -38.21 -0.28 -4.49 14 19 S 0.18 3.23 22.29 -107.50 -2.40 0.84 14 20 H 0.28 6.74 8.31 -40.82 -0.34 6.41 14 21 H 0.39 9.69 6.95 -40.82 -0.28 9.40 14 22 H 0.15 2.90 8.01 -52.48 -0.42 2.48 14 23 H 0.21 1.29 8.06 -52.48 -0.42 0.87 14 24 H 0.15 1.52 8.06 -52.48 -0.42 1.09 14 LS Contribution 242.31 15.07 3.65 3.65 Total: -1.00 -30.56 242.31 -5.74 -36.29 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -1.06 Total: 7.11 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -1.64 Total: -7.81 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.66 Total: -36.04 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.08 Total: -18.97 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.40 Total: 0.84 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.56 -5.74 -36.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609874880.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.636 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds