Wall clock time and date at job start Sun Mar 29 2020 21:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.47199 * 109.53770 * 2 1 4 4 N 2.60799 * 109.53617 * 0.02562 * 2 1 3 5 5 C 1.53127 * 109.50197 * 239.90624 * 2 1 3 6 6 C 1.53123 * 109.15019 * 182.39800 * 5 2 1 7 7 C 1.53034 * 109.27992 * 57.67185 * 6 5 2 8 8 N 1.46847 * 109.51345 * 300.80438 * 7 6 5 9 9 C 1.46895 * 110.99982 * 185.84805 * 8 7 6 10 10 C 1.52998 * 109.47410 * 66.04209 * 9 8 7 11 11 C 1.53005 * 109.47389 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47286 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99805 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99945 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99604 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00072 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47184 * 89.99809 * 16 14 12 18 18 H 1.48504 * 109.46970 * 209.99932 * 16 14 12 19 19 H 1.48502 * 109.46946 * 329.99667 * 16 14 12 20 20 C 1.46843 * 111.20124 * 61.74903 * 8 7 6 21 21 H 1.08996 * 109.46933 * 299.89518 * 1 2 3 22 22 H 1.08995 * 109.47202 * 59.89987 * 1 2 3 23 23 H 1.09002 * 109.47190 * 179.89984 * 1 2 3 24 24 H 1.09003 * 109.52393 * 302.30609 * 5 2 1 25 25 H 1.08997 * 109.52177 * 62.43698 * 5 2 1 26 26 H 1.08997 * 109.51083 * 297.71779 * 6 5 2 27 27 H 1.08998 * 109.48980 * 177.60711 * 6 5 2 28 28 H 1.09002 * 109.46271 * 180.79158 * 7 6 5 29 29 H 1.08994 * 109.46242 * 60.81457 * 7 6 5 30 30 H 1.08997 * 109.47568 * 186.04497 * 9 8 7 31 31 H 1.09005 * 109.47099 * 306.04338 * 9 8 7 32 32 H 1.09005 * 109.47295 * 300.00102 * 10 9 8 33 33 H 1.09007 * 109.47401 * 59.99986 * 10 9 8 34 34 H 1.08993 * 109.47015 * 300.00707 * 11 10 9 35 35 H 1.09005 * 109.46601 * 60.00430 * 11 10 9 36 36 H 0.96999 * 119.99427 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.46313 * 58.27251 * 20 8 7 38 38 H 1.09004 * 109.46429 * 178.24601 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0222 1.3872 0.0000 4 7 2.4021 2.4579 0.0011 5 6 2.0412 -0.7238 -1.2489 6 6 3.5712 -0.7716 -1.2107 7 6 4.0230 -1.4730 0.0722 8 7 3.5093 -0.7422 1.2377 9 6 4.0373 -1.3060 2.4872 10 6 5.5487 -1.0773 2.5513 11 6 6.0987 -1.6640 3.8530 12 6 7.5875 -1.4392 3.9158 13 1 8.0912 -0.9294 3.1079 14 6 8.3067 -1.8855 5.0042 15 7 9.6061 -1.6898 5.0587 16 14 7.4358 -2.7692 6.4006 17 1 7.4176 -4.2288 6.1277 18 1 8.1555 -2.5126 7.6740 19 1 6.0420 -2.2687 6.5102 20 6 2.0410 -0.7236 1.2480 21 1 -0.3633 0.5122 0.8909 22 1 -0.3633 0.5154 -0.8890 23 1 -0.3634 -1.0277 -0.0018 24 1 1.6452 -1.7391 -1.2692 25 1 1.7147 -0.1875 -2.1399 26 1 3.9677 0.2435 -1.2296 27 1 3.9394 -1.3229 -2.0759 28 1 5.1121 -1.4962 0.1091 29 1 3.6374 -2.4924 0.0838 30 1 3.5597 -0.8178 3.3366 31 1 3.8300 -2.3757 2.5193 32 1 6.0265 -1.5656 1.7019 33 1 5.7561 -0.0076 2.5191 34 1 5.6209 -1.1753 4.7021 35 1 5.8914 -2.7336 3.8855 36 1 10.1120 -2.0034 5.8246 37 1 1.6648 -1.7465 1.2543 38 1 1.6906 -0.2024 2.1389 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612155606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:48 Heat of formation + Delta-G solvation = 7.287931 kcal Electronic energy + Delta-G solvation = -16702.671591 eV Core-core repulsion = 14158.222413 eV Total energy + Delta-G solvation = -2544.449178 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.91226 -36.51438 -34.90624 -33.27910 -32.25554 -31.21875 -27.43542 -26.73958 -24.21121 -23.19756 -22.03395 -20.83285 -19.83660 -16.88900 -16.54375 -15.79895 -15.15120 -14.94762 -14.55675 -14.21887 -13.89432 -13.75690 -13.42682 -12.98244 -12.70772 -12.52935 -12.36365 -12.24576 -11.96349 -11.81156 -11.62867 -11.53626 -11.05767 -10.97042 -10.78732 -10.56519 -10.44416 -9.91537 -9.64908 -9.54093 -9.14490 -8.51269 -8.19337 -6.01510 -3.99183 2.86494 2.90930 3.31527 3.39040 3.42688 3.73814 3.99306 4.42205 4.47206 4.57184 4.69968 4.91097 5.14811 5.23501 5.31504 5.32653 5.36199 5.44310 5.50136 5.56375 5.60138 5.72020 5.74009 5.78392 5.91869 6.04445 6.15777 6.18634 6.55752 6.56900 6.91834 7.19763 7.22475 7.37888 7.48102 7.69290 7.82950 8.57946 9.04317 9.61064 11.12190 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040156 B = 0.004817 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.106338 B = 5811.572196 C = 5916.906293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.039 3.961 3 C 0.230 3.770 4 N -0.437 5.437 5 C -0.108 4.108 6 C -0.123 4.123 7 C 0.050 3.950 8 N -0.542 5.542 9 C 0.056 3.944 10 C -0.098 4.098 11 C -0.013 4.013 12 C -0.518 4.518 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.065 3.935 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.052 0.948 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.076 -1.896 -11.584 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.035 3.965 3 C -0.088 4.088 4 N -0.112 5.112 5 C -0.147 4.147 6 C -0.161 4.161 7 C -0.078 4.078 8 N -0.266 5.266 9 C -0.071 4.071 10 C -0.136 4.136 11 C -0.051 4.051 12 C -0.556 4.556 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.064 4.064 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.171 0.192 -11.498 22.355 hybrid contribution -0.620 -1.713 0.933 2.046 sum -19.791 -1.520 -10.565 22.486 Atomic orbital electron populations 1.21846 0.91395 1.03492 1.03191 1.18386 0.95877 0.84157 0.98123 1.28620 0.92919 0.94089 0.93171 1.81172 1.08678 1.13056 1.08281 1.21711 0.96717 1.00667 0.95572 1.21669 0.94705 1.02094 0.97589 1.22181 1.01508 0.94530 0.89537 1.61934 1.06075 1.55165 1.03428 1.22295 0.98076 0.96730 0.89973 1.21487 0.90924 1.01561 0.99621 1.19549 0.97068 0.95299 0.93154 1.21148 0.90772 1.37602 1.06091 0.91068 1.25044 0.94699 0.95688 0.98152 1.69924 1.06330 1.47408 1.30750 0.86764 0.80280 0.80230 0.81915 1.20368 1.21425 1.19047 1.22143 0.89198 0.98941 0.96156 0.91511 0.91493 0.90514 0.90073 0.90995 0.91214 0.90836 0.89470 0.94666 0.91172 0.95039 0.92779 0.92046 0.96676 0.97287 0.92794 0.92997 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.44 37.16 0.31 -0.53 16 2 C 0.04 0.35 0.72 -157.21 -0.11 0.23 16 3 C 0.23 2.95 12.34 -20.76 -0.26 2.70 16 4 N -0.44 -6.96 18.54 42.15 0.78 -6.18 16 5 C -0.11 -0.84 4.77 -26.60 -0.13 -0.97 16 6 C -0.12 -1.24 5.83 -26.65 -0.16 -1.39 16 7 C 0.05 0.61 5.29 -3.84 -0.02 0.59 16 8 N -0.54 -7.39 4.25 -234.68 -1.00 -8.38 16 9 C 0.06 0.89 4.96 -3.83 -0.02 0.87 16 10 C -0.10 -1.96 5.09 -26.73 -0.14 -2.10 16 11 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 12 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 13 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -28.37 13.96 55.43 0.77 -27.59 16 16 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 20 C 0.07 0.67 4.15 -3.83 -0.02 0.65 16 21 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.86 7.36 -51.93 -0.38 0.48 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.21 6.22 -51.93 -0.32 0.89 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 1.09 7.98 -51.93 -0.41 0.68 16 31 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.05 1.07 6.44 -51.93 -0.33 0.74 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 35 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -32.97 304.21 -7.05 -40.02 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -6.45 Total: -5.79 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.07 Total: -13.91 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.56 Total: -42.16 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.97 -7.05 -40.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612155606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.309 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds