Wall clock time and date at job start Sun Mar 29 2020 21:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.47199 * 109.53770 * 2 1 4 4 N 2.60799 * 109.53617 * 0.02562 * 2 1 3 5 5 C 1.53127 * 109.50197 * 239.90624 * 2 1 3 6 6 C 1.53123 * 109.15019 * 182.39800 * 5 2 1 7 7 C 1.53034 * 109.27992 * 57.67185 * 6 5 2 8 8 N 1.46847 * 109.51345 * 300.80438 * 7 6 5 9 9 C 1.46895 * 110.99982 * 185.84805 * 8 7 6 10 10 C 1.52998 * 109.47410 * 66.04209 * 9 8 7 11 11 C 1.53005 * 109.47389 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47286 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99805 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99945 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99604 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00072 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47184 * 89.99809 * 16 14 12 18 18 H 1.48504 * 109.46970 * 209.99932 * 16 14 12 19 19 H 1.48502 * 109.46946 * 329.99667 * 16 14 12 20 20 C 1.46843 * 111.20124 * 61.74903 * 8 7 6 21 21 H 1.08996 * 109.46933 * 299.89518 * 1 2 3 22 22 H 1.08995 * 109.47202 * 59.89987 * 1 2 3 23 23 H 1.09002 * 109.47190 * 179.89984 * 1 2 3 24 24 H 1.09003 * 109.52393 * 302.30609 * 5 2 1 25 25 H 1.08997 * 109.52177 * 62.43698 * 5 2 1 26 26 H 1.08997 * 109.51083 * 297.71779 * 6 5 2 27 27 H 1.08998 * 109.48980 * 177.60711 * 6 5 2 28 28 H 1.09002 * 109.46271 * 180.79158 * 7 6 5 29 29 H 1.08994 * 109.46242 * 60.81457 * 7 6 5 30 30 H 1.08997 * 109.47568 * 186.04497 * 9 8 7 31 31 H 1.09005 * 109.47099 * 306.04338 * 9 8 7 32 32 H 1.09005 * 109.47295 * 300.00102 * 10 9 8 33 33 H 1.09007 * 109.47401 * 59.99986 * 10 9 8 34 34 H 1.08993 * 109.47015 * 300.00707 * 11 10 9 35 35 H 1.09005 * 109.46601 * 60.00430 * 11 10 9 36 36 H 0.96999 * 119.99427 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.46313 * 58.27251 * 20 8 7 38 38 H 1.09004 * 109.46429 * 178.24601 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0222 1.3872 0.0000 4 7 2.4021 2.4579 0.0011 5 6 2.0412 -0.7238 -1.2489 6 6 3.5712 -0.7716 -1.2107 7 6 4.0230 -1.4730 0.0722 8 7 3.5093 -0.7422 1.2377 9 6 4.0373 -1.3060 2.4872 10 6 5.5487 -1.0773 2.5513 11 6 6.0987 -1.6640 3.8530 12 6 7.5875 -1.4392 3.9158 13 1 8.0912 -0.9294 3.1079 14 6 8.3067 -1.8855 5.0042 15 7 9.6061 -1.6898 5.0587 16 14 7.4358 -2.7692 6.4006 17 1 7.4176 -4.2288 6.1277 18 1 8.1555 -2.5126 7.6740 19 1 6.0420 -2.2687 6.5102 20 6 2.0410 -0.7236 1.2480 21 1 -0.3633 0.5122 0.8909 22 1 -0.3633 0.5154 -0.8890 23 1 -0.3634 -1.0277 -0.0018 24 1 1.6452 -1.7391 -1.2692 25 1 1.7147 -0.1875 -2.1399 26 1 3.9677 0.2435 -1.2296 27 1 3.9394 -1.3229 -2.0759 28 1 5.1121 -1.4962 0.1091 29 1 3.6374 -2.4924 0.0838 30 1 3.5597 -0.8178 3.3366 31 1 3.8300 -2.3757 2.5193 32 1 6.0265 -1.5656 1.7019 33 1 5.7561 -0.0076 2.5191 34 1 5.6209 -1.1753 4.7021 35 1 5.8914 -2.7336 3.8855 36 1 10.1120 -2.0034 5.8246 37 1 1.6648 -1.7465 1.2543 38 1 1.6906 -0.2024 2.1389 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612155606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:48 Heat of formation + Delta-G solvation = -14.605948 kcal Electronic energy + Delta-G solvation = -16703.620981 eV Core-core repulsion = 14158.222413 eV Total energy + Delta-G solvation = -2545.398568 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76343 -37.65302 -36.21167 -34.96975 -33.37008 -32.73121 -28.96423 -27.49099 -25.54533 -23.99459 -23.33018 -22.08810 -21.26488 -18.90118 -17.56573 -16.87789 -16.31710 -16.15566 -15.75454 -15.46624 -15.10755 -14.81234 -14.62962 -14.38518 -13.94024 -13.76242 -13.44256 -13.24051 -13.10526 -12.86060 -12.69572 -12.60318 -12.40228 -12.30464 -11.83652 -11.78696 -11.72586 -11.47009 -11.40411 -11.16241 -11.00119 -10.75972 -9.17498 -8.29679 -6.34601 1.35819 1.39105 1.51255 1.89667 1.94864 2.36899 2.86685 3.05644 3.09385 3.72902 3.84254 3.98593 4.11097 4.23532 4.33967 4.42010 4.59320 4.65117 4.71005 4.73617 4.81490 4.89170 4.93514 4.98312 5.01730 5.03858 5.08154 5.12668 5.28087 5.37507 5.39624 5.52810 5.60652 5.66696 6.14675 6.26702 6.30325 6.73493 6.74154 7.30108 8.87783 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040156 B = 0.004817 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.106338 B = 5811.572196 C = 5916.906293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.039 3.961 3 C 0.250 3.750 4 N -0.505 5.505 5 C -0.103 4.103 6 C -0.121 4.121 7 C 0.049 3.951 8 N -0.565 5.565 9 C 0.070 3.930 10 C -0.090 4.090 11 C -0.008 4.008 12 C -0.536 4.536 13 H 0.023 0.977 14 C 0.000 4.000 15 N -0.955 5.955 16 Si 0.958 3.042 17 H -0.262 1.262 18 H -0.285 1.285 19 H -0.244 1.244 20 C 0.063 3.937 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.106 0.894 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.019 0.981 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.084 0.916 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.715 -4.252 -11.473 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.036 3.964 3 C -0.067 4.067 4 N -0.181 5.181 5 C -0.141 4.141 6 C -0.159 4.159 7 C -0.078 4.078 8 N -0.290 5.290 9 C -0.058 4.058 10 C -0.128 4.128 11 C -0.046 4.046 12 C -0.574 4.574 13 H 0.041 0.959 14 C -0.196 4.196 15 N -0.596 5.596 16 Si 0.780 3.220 17 H -0.187 1.187 18 H -0.211 1.211 19 H -0.167 1.167 20 C -0.066 4.066 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.125 0.875 24 H 0.133 0.867 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.834 -2.158 -11.414 25.619 hybrid contribution 0.613 -0.931 0.808 1.377 sum -22.221 -3.089 -10.606 24.815 Atomic orbital electron populations 1.21876 0.88400 1.05554 1.03560 1.18750 0.97986 0.81454 0.98259 1.29571 0.91182 0.94730 0.91190 1.81180 1.10990 1.15447 1.10504 1.21766 0.94454 1.02535 0.95321 1.21653 0.96862 1.00142 0.97203 1.22184 0.99863 0.95833 0.89942 1.61818 1.08631 1.55782 1.02795 1.21998 0.94408 0.97894 0.91478 1.21305 0.94664 0.99307 0.97509 1.19482 0.93553 0.96371 0.95205 1.21527 0.93733 1.37137 1.04989 0.95866 1.26128 0.95423 0.96603 1.01492 1.70097 1.08459 1.49003 1.32069 0.85547 0.79748 0.79293 0.77372 1.18673 1.21113 1.16705 1.22276 0.86701 1.00845 0.96745 0.91679 0.90762 0.87549 0.86728 0.89718 0.94475 0.89038 0.92510 0.92509 0.90822 0.93356 0.93441 0.94803 0.96235 0.95740 0.92499 0.89818 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.44 71.98 0.61 -0.43 16 2 C 0.04 0.58 0.72 -53.93 -0.04 0.54 16 3 C 0.25 6.22 12.34 89.44 1.10 7.33 16 4 N -0.51 -16.47 18.54 20.01 0.37 -16.10 16 5 C -0.10 -1.20 4.77 30.68 0.15 -1.06 16 6 C -0.12 -2.23 5.83 30.65 0.18 -2.05 16 7 C 0.05 1.12 5.29 86.32 0.46 1.58 16 8 N -0.57 -14.52 4.25 -896.39 -3.81 -18.32 16 9 C 0.07 2.07 4.96 86.30 0.43 2.50 16 10 C -0.09 -3.65 5.09 30.60 0.16 -3.49 16 11 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 12 C -0.54 -32.17 9.66 25.60 0.25 -31.92 16 13 H 0.02 1.55 7.99 -2.91 -0.02 1.53 16 14 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 15 N -0.96 -61.72 13.96 21.45 0.30 -61.42 16 16 Si 0.96 44.67 27.47 68.60 1.88 46.56 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 20 C 0.06 1.08 4.15 86.33 0.36 1.44 16 21 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 22 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.04 0.92 7.36 -2.39 -0.02 0.90 16 27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.61 6.22 -2.39 -0.01 1.60 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 2.14 7.98 -2.39 -0.02 2.12 16 31 H 0.05 1.29 8.12 -2.38 -0.02 1.27 16 32 H 0.05 1.95 6.44 -2.38 -0.02 1.94 16 33 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 35 H 0.02 1.09 7.57 -2.38 -0.02 1.07 16 36 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.41 8.01 -2.38 -0.02 1.39 16 Total: -1.00 -76.16 304.21 3.93 -72.23 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 0.96 Total: 2.44 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 4.23 Total: -25.38 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -3.14 Total: -95.84 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -76.16 3.93 -72.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612155606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.622 kcal (2) G-P(sol) polarization free energy of solvation -76.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds