Wall clock time and date at job start Sun Mar 29 2020 21:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47201 * 109.50487 * 2 1 4 4 N 2.60798 * 109.50492 * 0.02562 * 2 1 3 5 5 C 1.53114 * 109.50488 * 120.12535 * 2 1 3 6 6 C 1.53120 * 109.16161 * 177.59417 * 5 2 1 7 7 C 1.53042 * 109.27679 * 302.34397 * 6 5 2 8 8 N 1.46846 * 109.52384 * 59.17688 * 7 6 5 9 9 C 1.46896 * 110.99998 * 174.15789 * 8 7 6 10 10 C 1.52992 * 109.47379 * 294.21502 * 9 8 7 11 11 C 1.53007 * 109.47341 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47437 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99646 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00322 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99712 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00150 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47235 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46928 * 119.99828 * 16 14 12 19 19 H 1.48498 * 109.47067 * 239.99644 * 16 14 12 20 20 C 1.46850 * 111.19870 * 298.26168 * 8 7 6 21 21 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46762 * 300.07293 * 1 2 3 23 23 H 1.09003 * 109.46807 * 60.06965 * 1 2 3 24 24 H 1.08995 * 109.52025 * 297.49872 * 5 2 1 25 25 H 1.09002 * 109.52325 * 57.68648 * 5 2 1 26 26 H 1.08998 * 109.50493 * 62.28140 * 6 5 2 27 27 H 1.09005 * 109.50270 * 182.40711 * 6 5 2 28 28 H 1.08993 * 109.46230 * 179.19773 * 7 6 5 29 29 H 1.09006 * 109.46257 * 299.17228 * 7 6 5 30 30 H 1.09002 * 109.47122 * 54.21627 * 9 8 7 31 31 H 1.09004 * 109.47037 * 174.21412 * 9 8 7 32 32 H 1.08998 * 109.47345 * 299.99711 * 10 9 8 33 33 H 1.08993 * 109.47560 * 60.00189 * 10 9 8 34 34 H 1.08998 * 109.46739 * 300.00173 * 11 10 9 35 35 H 1.09004 * 109.46981 * 59.99967 * 11 10 9 36 36 H 0.97003 * 119.99682 * 180.02562 * 15 14 12 37 37 H 1.08995 * 109.45831 * 301.71808 * 20 8 7 38 38 H 1.08998 * 109.45719 * 181.75658 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0215 1.3875 0.0000 4 7 2.4008 2.4583 0.0011 5 6 2.0413 -0.7244 1.2483 6 6 3.5712 -0.7725 1.2103 7 6 4.0229 -1.4730 -0.0732 8 7 3.5092 -0.7417 -1.2384 9 6 4.0371 -1.3048 -2.4881 10 6 5.5495 -1.0818 -2.5493 11 6 6.0995 -1.6690 -3.8507 12 6 7.5890 -1.4488 -3.9112 13 1 8.0930 -0.9404 -3.1025 14 6 8.3083 -1.8952 -4.9995 15 7 7.6945 -2.5138 -5.9845 16 14 10.1546 -1.6216 -5.0747 17 1 10.5995 -0.9077 -3.8511 18 1 10.8462 -2.9329 -5.1612 19 1 10.4859 -0.8073 -6.2716 20 6 2.0408 -0.7229 -1.2484 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5150 0.8894 23 1 -0.3633 0.5128 -0.8906 24 1 1.7158 -0.1880 2.1396 25 1 1.6452 -1.7397 1.2681 26 1 3.9679 0.2426 1.2297 27 1 3.9396 -1.3245 2.0751 28 1 5.1120 -1.4963 -0.1103 29 1 3.6373 -2.4925 -0.0856 30 1 3.8258 -2.3736 -2.5229 31 1 3.5627 -0.8129 -3.3373 32 1 5.7609 -0.0131 -2.5146 33 1 6.0240 -1.5737 -1.7002 34 1 5.8881 -2.7377 -3.8849 35 1 5.6251 -1.1774 -4.7001 36 1 8.2006 -2.8283 -6.7499 37 1 1.6647 -1.7459 -1.2553 38 1 1.6905 -0.2013 -2.1390 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612155635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:50 Heat of formation + Delta-G solvation = 3.491551 kcal Electronic energy + Delta-G solvation = -16657.933238 eV Core-core repulsion = 14113.319437 eV Total energy + Delta-G solvation = -2544.613802 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85615 -36.44696 -34.82936 -33.27604 -32.21630 -30.95154 -27.12860 -26.57567 -24.18747 -23.15010 -22.16019 -20.91281 -19.76661 -16.75746 -16.28495 -15.62692 -15.07123 -14.88904 -14.53370 -14.38196 -13.84487 -13.68973 -13.40257 -12.88400 -12.59321 -12.45314 -12.23941 -12.06185 -11.91496 -11.70504 -11.50837 -11.31103 -10.99610 -10.80903 -10.74252 -10.58457 -10.38322 -10.32272 -9.57530 -9.31211 -9.02337 -8.32449 -8.11406 -5.97813 -3.99485 2.89557 2.94051 3.32913 3.40320 3.45182 3.78561 4.05912 4.46196 4.49188 4.61260 4.75116 4.95004 5.19292 5.28502 5.36408 5.38340 5.41774 5.50654 5.56988 5.61157 5.66983 5.77184 5.80281 5.84729 6.01277 6.10485 6.21191 6.31784 6.71484 6.76681 7.12955 7.31961 7.35695 7.70943 7.72306 7.85520 8.02889 8.46587 9.07914 9.64583 11.13716 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.042279 B = 0.004522 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.101077 B = 6190.885577 C = 6255.975663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.038 3.962 3 C 0.232 3.768 4 N -0.439 5.439 5 C -0.108 4.108 6 C -0.123 4.123 7 C 0.051 3.949 8 N -0.543 5.543 9 C 0.059 3.941 10 C -0.105 4.105 11 C 0.022 3.978 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.065 3.935 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.052 0.948 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.297 0.017 13.650 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.034 3.966 3 C -0.087 4.087 4 N -0.114 5.114 5 C -0.146 4.146 6 C -0.160 4.160 7 C -0.077 4.077 8 N -0.267 5.267 9 C -0.068 4.068 10 C -0.143 4.143 11 C -0.016 4.016 12 C -0.555 4.555 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.065 4.065 21 H 0.095 0.905 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.519 2.054 13.513 19.940 hybrid contribution 0.684 -1.138 -0.312 1.364 sum -13.835 0.916 13.201 19.144 Atomic orbital electron populations 1.21849 0.91410 1.03504 1.03159 1.18392 0.95878 0.84129 0.98171 1.28629 0.92858 0.94090 0.93096 1.81161 1.08754 1.13079 1.08369 1.21704 0.96710 1.00671 0.95558 1.21673 0.94735 1.02018 0.97617 1.22168 1.01432 0.94554 0.89568 1.61967 1.06008 1.55162 1.03556 1.22272 0.98119 0.96754 0.89659 1.21661 0.91059 1.01070 1.00530 1.19077 0.95516 0.95829 0.91171 1.21291 0.93084 1.36801 1.04360 0.92664 1.25021 0.98438 0.95295 0.95738 1.69979 1.35611 1.39416 1.08646 0.86552 0.85735 0.77832 0.78002 1.19732 1.21050 1.21021 1.22141 0.89310 0.98942 0.96066 0.90499 0.91536 0.91499 0.91051 0.90053 0.91294 0.90915 0.89586 0.94694 0.95019 0.91167 0.92684 0.93385 0.96782 0.96630 0.93122 0.92993 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.44 37.16 0.31 -0.58 16 2 C 0.04 0.36 0.72 -157.22 -0.11 0.25 16 3 C 0.23 3.05 12.35 -20.76 -0.26 2.79 16 4 N -0.44 -7.10 18.54 42.15 0.78 -6.32 16 5 C -0.11 -0.88 4.77 -26.61 -0.13 -1.00 16 6 C -0.12 -1.27 5.83 -26.65 -0.16 -1.43 16 7 C 0.05 0.64 5.29 -3.83 -0.02 0.62 16 8 N -0.54 -7.77 4.25 -234.68 -1.00 -8.77 16 9 C 0.06 0.99 4.96 -3.83 -0.02 0.97 16 10 C -0.11 -2.20 5.08 -26.73 -0.14 -2.34 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 12 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.06 0.71 4.15 -3.83 -0.02 0.69 16 21 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.86 7.36 -51.93 -0.38 0.48 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.23 6.21 -51.93 -0.32 0.91 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 31 H 0.07 1.19 7.99 -51.93 -0.41 0.78 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.98 6.43 -51.93 -0.33 0.65 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.90 8.02 -51.93 -0.42 0.49 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -32.37 307.81 -7.42 -39.79 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -6.48 Total: -6.55 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.08 Total: -13.28 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.52 Total: -41.56 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.37 -7.42 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612155635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.285 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds