Wall clock time and date at job start Sun Mar 29 2020 21:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47201 * 109.50487 * 2 1 4 4 N 2.60798 * 109.50492 * 0.02562 * 2 1 3 5 5 C 1.53114 * 109.50488 * 120.12535 * 2 1 3 6 6 C 1.53120 * 109.16161 * 177.59417 * 5 2 1 7 7 C 1.53042 * 109.27679 * 302.34397 * 6 5 2 8 8 N 1.46846 * 109.52384 * 59.17688 * 7 6 5 9 9 C 1.46896 * 110.99998 * 174.15789 * 8 7 6 10 10 C 1.52992 * 109.47379 * 294.21502 * 9 8 7 11 11 C 1.53007 * 109.47341 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47437 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99646 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00322 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99712 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00150 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47235 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46928 * 119.99828 * 16 14 12 19 19 H 1.48498 * 109.47067 * 239.99644 * 16 14 12 20 20 C 1.46850 * 111.19870 * 298.26168 * 8 7 6 21 21 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46762 * 300.07293 * 1 2 3 23 23 H 1.09003 * 109.46807 * 60.06965 * 1 2 3 24 24 H 1.08995 * 109.52025 * 297.49872 * 5 2 1 25 25 H 1.09002 * 109.52325 * 57.68648 * 5 2 1 26 26 H 1.08998 * 109.50493 * 62.28140 * 6 5 2 27 27 H 1.09005 * 109.50270 * 182.40711 * 6 5 2 28 28 H 1.08993 * 109.46230 * 179.19773 * 7 6 5 29 29 H 1.09006 * 109.46257 * 299.17228 * 7 6 5 30 30 H 1.09002 * 109.47122 * 54.21627 * 9 8 7 31 31 H 1.09004 * 109.47037 * 174.21412 * 9 8 7 32 32 H 1.08998 * 109.47345 * 299.99711 * 10 9 8 33 33 H 1.08993 * 109.47560 * 60.00189 * 10 9 8 34 34 H 1.08998 * 109.46739 * 300.00173 * 11 10 9 35 35 H 1.09004 * 109.46981 * 59.99967 * 11 10 9 36 36 H 0.97003 * 119.99682 * 180.02562 * 15 14 12 37 37 H 1.08995 * 109.45831 * 301.71808 * 20 8 7 38 38 H 1.08998 * 109.45719 * 181.75658 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0215 1.3875 0.0000 4 7 2.4008 2.4583 0.0011 5 6 2.0413 -0.7244 1.2483 6 6 3.5712 -0.7725 1.2103 7 6 4.0229 -1.4730 -0.0732 8 7 3.5092 -0.7417 -1.2384 9 6 4.0371 -1.3048 -2.4881 10 6 5.5495 -1.0818 -2.5493 11 6 6.0995 -1.6690 -3.8507 12 6 7.5890 -1.4488 -3.9112 13 1 8.0930 -0.9404 -3.1025 14 6 8.3083 -1.8952 -4.9995 15 7 7.6945 -2.5138 -5.9845 16 14 10.1546 -1.6216 -5.0747 17 1 10.5995 -0.9077 -3.8511 18 1 10.8462 -2.9329 -5.1612 19 1 10.4859 -0.8073 -6.2716 20 6 2.0408 -0.7229 -1.2484 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5150 0.8894 23 1 -0.3633 0.5128 -0.8906 24 1 1.7158 -0.1880 2.1396 25 1 1.6452 -1.7397 1.2681 26 1 3.9679 0.2426 1.2297 27 1 3.9396 -1.3245 2.0751 28 1 5.1120 -1.4963 -0.1103 29 1 3.6373 -2.4925 -0.0856 30 1 3.8258 -2.3736 -2.5229 31 1 3.5627 -0.8129 -3.3373 32 1 5.7609 -0.0131 -2.5146 33 1 6.0240 -1.5737 -1.7002 34 1 5.8881 -2.7377 -3.8849 35 1 5.6251 -1.1774 -4.7001 36 1 8.2006 -2.8283 -6.7499 37 1 1.6647 -1.7459 -1.2553 38 1 1.6905 -0.2013 -2.1390 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612155635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:50 Heat of formation + Delta-G solvation = -16.863081 kcal Electronic energy + Delta-G solvation = -16658.815881 eV Core-core repulsion = 14113.319437 eV Total energy + Delta-G solvation = -2545.496445 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76543 -37.64032 -36.20084 -35.00678 -33.24747 -32.56248 -28.63254 -27.48907 -25.67985 -23.99957 -23.54622 -22.16275 -21.23050 -18.51339 -17.55869 -16.85754 -16.35921 -16.28889 -15.75210 -15.45228 -15.06965 -14.77600 -14.46848 -14.23227 -13.95300 -13.64747 -13.41331 -13.12571 -13.07420 -12.85453 -12.68192 -12.63397 -12.45982 -12.42698 -12.18630 -11.80300 -11.61066 -11.44648 -11.32904 -11.15535 -10.94360 -10.55806 -9.19652 -8.21517 -6.32103 1.38150 1.38796 1.52192 1.89352 1.94425 2.39688 2.86414 3.09160 3.11575 3.72562 3.84184 3.98224 4.12484 4.24321 4.36084 4.43470 4.58627 4.66441 4.71979 4.75341 4.82683 4.92408 4.94515 5.02491 5.03753 5.09107 5.12374 5.19491 5.30690 5.37811 5.39919 5.51382 5.74472 5.85412 6.11141 6.25686 6.28460 6.73164 6.84470 7.37045 8.90505 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.042279 B = 0.004522 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.101077 B = 6190.885577 C = 6255.975663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.040 3.960 3 C 0.251 3.749 4 N -0.503 5.503 5 C -0.103 4.103 6 C -0.119 4.119 7 C 0.048 3.952 8 N -0.561 5.561 9 C 0.072 3.928 10 C -0.090 4.090 11 C 0.027 3.973 12 C -0.544 4.544 13 H 0.054 0.946 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.963 3.037 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.278 1.278 20 C 0.062 3.938 21 H 0.105 0.895 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.039 0.961 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.051 0.949 34 H -0.004 1.004 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.080 0.920 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.317 -1.023 15.119 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.036 3.964 3 C -0.067 4.067 4 N -0.179 5.179 5 C -0.141 4.141 6 C -0.157 4.157 7 C -0.079 4.079 8 N -0.286 5.286 9 C -0.055 4.055 10 C -0.128 4.128 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.072 0.928 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.788 3.212 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.203 1.203 20 C -0.067 4.067 21 H 0.123 0.877 22 H 0.095 0.905 23 H 0.082 0.918 24 H 0.105 0.895 25 H 0.131 0.869 26 H 0.058 0.942 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.555 1.017 14.999 21.633 hybrid contribution 0.988 -0.836 -0.777 1.509 sum -14.567 0.181 14.222 20.359 Atomic orbital electron populations 1.21883 0.88438 1.05506 1.03599 1.18722 0.97978 0.81534 0.98116 1.29522 0.91216 0.94691 0.91223 1.81168 1.10944 1.15316 1.10461 1.21770 0.94607 1.02460 0.95278 1.21654 0.96753 1.00254 0.97040 1.22205 1.00038 0.95701 0.89957 1.61864 1.08509 1.55563 1.02683 1.21938 0.95055 0.97248 0.91282 1.21399 0.94274 0.99350 0.97822 1.18965 0.94628 0.94642 0.92850 1.21706 0.94652 1.37114 1.04691 0.92783 1.25942 1.03717 0.94758 0.95205 1.70094 1.37729 1.40102 1.09276 0.85426 0.79362 0.78165 0.78271 1.18977 1.19958 1.20341 1.22274 0.86886 1.00712 0.96834 0.87680 0.90534 0.91779 0.89476 0.86885 0.94194 0.88819 0.92170 0.92912 0.94345 0.91688 0.94378 0.93033 0.98523 0.99135 0.92711 0.90168 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.44 71.98 0.61 -0.60 16 2 C 0.04 0.65 0.72 -53.94 -0.04 0.61 16 3 C 0.25 6.39 12.35 89.44 1.10 7.50 16 4 N -0.50 -16.52 18.54 20.01 0.37 -16.15 16 5 C -0.10 -1.28 4.77 30.67 0.15 -1.13 16 6 C -0.12 -2.23 5.83 30.65 0.18 -2.05 16 7 C 0.05 1.16 5.29 86.33 0.46 1.62 16 8 N -0.56 -15.56 4.25 -896.38 -3.81 -19.37 16 9 C 0.07 2.44 4.96 86.30 0.43 2.87 16 10 C -0.09 -3.90 5.08 30.59 0.16 -3.74 16 11 C 0.03 1.45 4.97 29.85 0.15 1.59 16 12 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 13 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 14 C 0.00 0.09 5.46 84.65 0.46 0.55 16 15 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 16 Si 0.96 45.30 29.54 68.60 2.03 47.32 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 C 0.06 1.20 4.15 86.32 0.36 1.56 16 21 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 22 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.04 0.98 7.36 -2.39 -0.02 0.96 16 27 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.06 1.73 6.21 -2.39 -0.01 1.71 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.04 1.24 8.12 -2.39 -0.02 1.22 16 31 H 0.06 2.24 7.99 -2.39 -0.02 2.22 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.05 2.16 6.43 -2.39 -0.02 2.14 16 34 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.58 8.02 -2.39 -0.02 1.56 16 Total: -1.00 -72.49 307.81 4.12 -68.37 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: 1.01 Total: -0.12 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 4.24 Total: -23.00 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -3.16 Total: -92.58 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -72.49 4.12 -68.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612155635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.507 kcal (2) G-P(sol) polarization free energy of solvation -72.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds