Wall clock time and date at job start Sun Mar 29 2020 21:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47168 * 10.26207 * 4 3 2 6 6 N 1.46896 * 109.47114 * 179.97438 * 5 4 3 7 7 C 1.46956 * 111.00264 * 293.80085 * 6 5 4 8 8 C 1.53048 * 109.36563 * 176.81245 * 7 6 5 9 9 N 1.46963 * 109.36781 * 58.39854 * 8 7 6 10 10 C 1.46896 * 110.99868 * 176.81328 * 9 8 7 11 11 C 1.50703 * 109.46979 * 293.79526 * 10 9 8 12 12 H 1.07997 * 120.00268 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99784 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99708 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99714 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47113 * 60.00451 * 15 13 11 17 17 H 1.48506 * 109.46989 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47445 * 300.00498 * 15 13 11 19 19 C 1.46957 * 110.87713 * 300.68055 * 9 8 7 20 20 C 1.46963 * 111.00169 * 169.99835 * 6 5 4 21 21 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 22 22 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 23 23 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 24 24 H 1.09001 * 109.47046 * 130.25833 * 4 3 2 25 25 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 26 26 H 1.09001 * 109.47289 * 300.00032 * 5 4 3 27 27 H 1.09004 * 109.47261 * 59.99776 * 5 4 3 28 28 H 1.09006 * 109.48298 * 296.77713 * 7 6 5 29 29 H 1.09000 * 109.49028 * 56.84339 * 7 6 5 30 30 H 1.08998 * 109.49036 * 298.43023 * 8 7 6 31 31 H 1.09001 * 109.49100 * 178.36836 * 8 7 6 32 32 H 1.08997 * 109.47364 * 53.79771 * 10 9 8 33 33 H 1.09005 * 109.46879 * 173.79995 * 10 9 8 34 34 H 0.97000 * 119.99163 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.48761 * 299.34899 * 19 9 8 36 36 H 1.09002 * 109.50314 * 179.29551 * 19 9 8 37 37 H 1.09002 * 109.48412 * 303.15760 * 20 6 5 38 38 H 1.08998 * 109.48746 * 63.21928 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6293 -1.4171 -0.2570 6 7 6.0983 -1.4157 -0.2576 7 6 6.6238 -0.6469 -1.3945 8 6 8.1515 -0.6029 -1.3146 9 7 8.6796 -1.9744 -1.3208 10 6 10.1485 -1.9729 -1.3214 11 6 10.6498 -1.3934 -2.6191 12 1 9.9474 -1.0592 -3.3683 13 6 12.0052 -1.2898 -2.8499 14 7 12.8605 -1.6972 -1.9377 15 14 12.6264 -0.5708 -4.4581 16 1 12.1306 0.8216 -4.6021 17 1 14.1115 -0.5694 -4.4587 18 1 12.1312 -1.3923 -5.5916 19 6 8.1541 -2.7431 -0.1839 20 6 6.6263 -2.7871 -0.2638 21 1 -0.3633 -0.6641 0.7843 22 1 -0.3633 1.0112 0.1831 23 1 -0.3634 -0.3471 -0.9672 24 1 4.4808 0.6663 -0.7843 25 1 4.4811 0.3492 0.9672 26 1 4.2666 -2.0816 0.5272 27 1 4.2663 -1.7645 -1.2243 28 1 6.3219 -1.1243 -2.3268 29 1 6.2285 0.3683 -1.3607 30 1 8.4533 -0.1013 -0.3952 31 1 8.5450 -0.0578 -2.1726 32 1 10.5116 -1.3692 -0.4896 33 1 10.5129 -2.9947 -1.2150 34 1 13.8140 -1.6246 -2.1003 35 1 8.4559 -2.2657 0.7484 36 1 8.5494 -3.7583 -0.2172 37 1 6.2328 -3.3321 0.5942 38 1 6.3245 -3.2888 -1.1832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613175120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:21 Heat of formation + Delta-G solvation = 49.078929 kcal Electronic energy + Delta-G solvation = -16270.719932 eV Core-core repulsion = 13728.082947 eV Total energy + Delta-G solvation = -2542.636984 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.85559 -35.90090 -34.31412 -32.59882 -31.31092 -30.37265 -28.33784 -26.83328 -24.82800 -23.22422 -22.06661 -21.19171 -19.16167 -16.89647 -16.28932 -15.63470 -15.25559 -14.57984 -14.42868 -14.24829 -14.02351 -13.86003 -13.68183 -13.55430 -13.20323 -12.72213 -12.32003 -11.97674 -11.71228 -11.48419 -11.11338 -10.84625 -10.72152 -10.62496 -10.40130 -10.27248 -9.90096 -9.78051 -9.60242 -9.17235 -8.42198 -8.14455 -7.20537 -6.01165 -4.02640 2.57222 2.62712 3.34350 3.38299 3.41232 3.91285 4.37380 4.43554 4.94743 4.99356 5.14785 5.30171 5.32138 5.34389 5.37859 5.43320 5.45680 5.59437 5.74031 5.77855 5.84380 5.88362 5.96072 5.97592 6.09794 6.23437 6.45952 6.61960 6.70866 7.19585 7.23562 7.36976 7.39689 7.55699 7.81467 8.11169 8.23153 8.57314 9.04672 9.61443 11.09723 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.046994 B = 0.004091 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.681896 B = 6842.700273 C = 7260.800910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.207 4.207 3 C -0.176 4.176 4 C -0.006 4.006 5 C 0.063 3.937 6 N -0.541 5.541 7 C 0.053 3.947 8 C 0.067 3.933 9 N -0.540 5.540 10 C 0.194 3.806 11 C -0.508 4.508 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.056 3.944 20 C 0.062 3.938 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.086 0.914 32 H -0.008 1.008 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.093 1.844 4.191 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.207 4.207 3 C -0.176 4.176 4 C -0.043 4.043 5 C -0.066 4.066 6 N -0.266 5.266 7 C -0.074 4.074 8 C -0.061 4.061 9 N -0.265 5.265 10 C 0.069 3.931 11 C -0.547 4.547 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.073 4.073 20 C -0.066 4.066 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.009 0.991 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.873 1.812 4.224 19.424 hybrid contribution 0.468 0.345 -0.809 0.996 sum -18.405 2.157 3.415 18.843 Atomic orbital electron populations 1.18807 0.84816 1.02807 1.02849 1.22375 0.93920 1.01726 1.02650 1.22415 0.93631 1.01011 1.00550 1.18692 0.83559 0.98138 1.03908 1.21963 0.88197 0.95842 1.00564 1.62150 1.05924 1.14525 1.43958 1.22330 0.96459 0.97410 0.91238 1.21990 0.91599 0.91384 1.01163 1.62282 1.12064 1.12231 1.39919 1.19694 0.79783 0.97065 0.96577 1.21124 0.91278 1.40460 1.01797 0.91985 1.24994 0.96864 0.95797 0.96967 1.69954 1.02149 1.47605 1.34130 0.86560 0.77452 0.79592 0.83795 1.20265 1.21365 1.20199 1.22063 0.92805 0.98986 0.93406 1.22150 0.95860 0.88424 1.00159 0.90401 0.90404 0.90401 0.89430 0.88758 0.90783 0.94703 0.94276 0.90960 0.95266 0.89564 0.99052 0.95246 0.92876 0.95092 0.90997 0.91173 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.26 10.32 34.37 0.35 0.09 16 2 C -0.21 -2.33 14.13 -37.12 -0.52 -2.86 16 3 C -0.18 -2.15 13.34 -37.12 -0.50 -2.65 16 4 C -0.01 -0.07 5.64 -29.52 -0.17 -0.24 16 5 C 0.06 0.78 4.91 -3.83 -0.02 0.76 16 6 N -0.54 -8.10 4.71 -234.46 -1.10 -9.21 16 7 C 0.05 0.86 5.41 -3.77 -0.02 0.84 16 8 C 0.07 1.34 5.43 -3.76 -0.02 1.32 16 9 N -0.54 -11.92 4.70 -235.91 -1.11 -13.02 16 10 C 0.19 5.13 4.72 -4.98 -0.02 5.11 16 11 C -0.51 -14.36 8.47 -34.44 -0.29 -14.66 16 12 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 15 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 20 C 0.06 0.96 5.61 -3.76 -0.02 0.94 16 21 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.09 0.98 6.49 -51.93 -0.34 0.64 16 25 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 27 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.00 6.34 -51.93 -0.33 0.67 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.82 6.79 -51.93 -0.35 1.47 16 32 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 33 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 37 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 311.24 15.07 4.69 4.69 Total: -1.00 -30.79 311.24 -9.58 -40.37 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -6.43 Total: -4.52 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.35 Total: -8.84 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -1.48 Total: -48.41 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.79 -9.58 -40.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613175120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.449 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds