Wall clock time and date at job start Sun Mar 29 2020 21:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47168 * 10.26207 * 4 3 2 6 6 N 1.46896 * 109.47114 * 179.97438 * 5 4 3 7 7 C 1.46956 * 111.00264 * 293.80085 * 6 5 4 8 8 C 1.53048 * 109.36563 * 176.81245 * 7 6 5 9 9 N 1.46963 * 109.36781 * 58.39854 * 8 7 6 10 10 C 1.46896 * 110.99868 * 176.81328 * 9 8 7 11 11 C 1.50703 * 109.46979 * 293.79526 * 10 9 8 12 12 H 1.07997 * 120.00268 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99784 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99708 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99714 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47113 * 60.00451 * 15 13 11 17 17 H 1.48506 * 109.46989 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47445 * 300.00498 * 15 13 11 19 19 C 1.46957 * 110.87713 * 300.68055 * 9 8 7 20 20 C 1.46963 * 111.00169 * 169.99835 * 6 5 4 21 21 H 1.09001 * 109.47046 * 229.74167 * 1 2 3 22 22 H 1.08996 * 109.47170 * 349.73467 * 1 2 3 23 23 H 1.08992 * 109.47449 * 109.74243 * 1 2 3 24 24 H 1.09001 * 109.47046 * 130.25833 * 4 3 2 25 25 H 1.08996 * 109.47366 * 250.26237 * 4 3 2 26 26 H 1.09001 * 109.47289 * 300.00032 * 5 4 3 27 27 H 1.09004 * 109.47261 * 59.99776 * 5 4 3 28 28 H 1.09006 * 109.48298 * 296.77713 * 7 6 5 29 29 H 1.09000 * 109.49028 * 56.84339 * 7 6 5 30 30 H 1.08998 * 109.49036 * 298.43023 * 8 7 6 31 31 H 1.09001 * 109.49100 * 178.36836 * 8 7 6 32 32 H 1.08997 * 109.47364 * 53.79771 * 10 9 8 33 33 H 1.09005 * 109.46879 * 173.79995 * 10 9 8 34 34 H 0.97000 * 119.99163 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.48761 * 299.34899 * 19 9 8 36 36 H 1.09002 * 109.50314 * 179.29551 * 19 9 8 37 37 H 1.09002 * 109.48412 * 303.15760 * 20 6 5 38 38 H 1.08998 * 109.48746 * 63.21928 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6293 -1.4171 -0.2570 6 7 6.0983 -1.4157 -0.2576 7 6 6.6238 -0.6469 -1.3945 8 6 8.1515 -0.6029 -1.3146 9 7 8.6796 -1.9744 -1.3208 10 6 10.1485 -1.9729 -1.3214 11 6 10.6498 -1.3934 -2.6191 12 1 9.9474 -1.0592 -3.3683 13 6 12.0052 -1.2898 -2.8499 14 7 12.8605 -1.6972 -1.9377 15 14 12.6264 -0.5708 -4.4581 16 1 12.1306 0.8216 -4.6021 17 1 14.1115 -0.5694 -4.4587 18 1 12.1312 -1.3923 -5.5916 19 6 8.1541 -2.7431 -0.1839 20 6 6.6263 -2.7871 -0.2638 21 1 -0.3633 -0.6641 0.7843 22 1 -0.3633 1.0112 0.1831 23 1 -0.3634 -0.3471 -0.9672 24 1 4.4808 0.6663 -0.7843 25 1 4.4811 0.3492 0.9672 26 1 4.2666 -2.0816 0.5272 27 1 4.2663 -1.7645 -1.2243 28 1 6.3219 -1.1243 -2.3268 29 1 6.2285 0.3683 -1.3607 30 1 8.4533 -0.1013 -0.3952 31 1 8.5450 -0.0578 -2.1726 32 1 10.5116 -1.3692 -0.4896 33 1 10.5129 -2.9947 -1.2150 34 1 13.8140 -1.6246 -2.1003 35 1 8.4559 -2.2657 0.7484 36 1 8.5494 -3.7583 -0.2172 37 1 6.2328 -3.3321 0.5942 38 1 6.3245 -3.2888 -1.1832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613175120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:20 Heat of formation + Delta-G solvation = 28.705798 kcal Electronic energy + Delta-G solvation = -16271.603377 eV Core-core repulsion = 13728.082947 eV Total energy + Delta-G solvation = -2543.520430 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.25097 -37.27988 -35.45690 -34.50590 -32.43337 -31.76917 -29.80509 -28.11258 -26.37741 -24.69182 -23.61825 -22.68790 -20.64058 -18.49457 -17.83458 -17.02125 -16.39424 -16.30716 -15.84453 -15.54723 -15.39830 -15.12708 -14.83037 -14.41181 -14.19445 -14.05484 -13.82549 -13.46649 -13.18314 -12.96371 -12.69164 -12.62617 -12.28522 -12.24999 -12.11408 -11.85726 -11.52465 -11.19269 -10.66342 -10.61540 -10.54783 -9.36885 -9.03252 -8.20901 -6.31584 1.41075 1.44583 1.52518 1.71766 1.78703 2.40205 2.84787 3.11131 3.30011 3.49447 3.98308 3.98879 4.18163 4.23406 4.38062 4.46346 4.49118 4.56460 4.66422 4.79470 4.82297 4.84584 4.86302 4.97523 4.97926 5.03662 5.04272 5.06584 5.16983 5.22722 5.28078 5.63202 5.98809 6.03725 6.08226 6.34335 6.62107 6.72599 6.84129 7.38209 8.90263 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.046994 B = 0.004091 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.681896 B = 6842.700273 C = 7260.800910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.204 4.204 3 C -0.215 4.215 4 C 0.000 4.000 5 C 0.070 3.930 6 N -0.546 5.546 7 C 0.065 3.935 8 C 0.068 3.932 9 N -0.547 5.547 10 C 0.209 3.791 11 C -0.525 4.525 12 H 0.063 0.937 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.971 3.029 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.054 3.946 20 C 0.071 3.929 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.017 0.983 31 H 0.069 0.931 32 H -0.040 1.040 33 H 0.003 0.997 34 H 0.265 0.735 35 H 0.022 0.978 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.232 2.336 3.542 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.204 4.204 3 C -0.215 4.215 4 C -0.036 4.036 5 C -0.058 4.058 6 N -0.271 5.271 7 C -0.063 4.063 8 C -0.060 4.060 9 N -0.272 5.272 10 C 0.083 3.917 11 C -0.563 4.563 12 H 0.081 0.919 13 C -0.197 4.197 14 N -0.576 5.576 15 Si 0.795 3.205 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.075 4.075 20 C -0.057 4.057 21 H 0.111 0.889 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.036 0.964 31 H 0.087 0.913 32 H -0.022 1.022 33 H 0.021 0.979 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.047 2.304 3.583 21.474 hybrid contribution 1.062 0.172 -0.538 1.203 sum -19.985 2.477 3.045 20.367 Atomic orbital electron populations 1.19078 0.82293 1.04249 1.04181 1.23366 0.95232 1.00381 1.01439 1.22683 0.94250 1.02576 1.02017 1.18589 0.83581 0.97411 1.04049 1.21949 0.86075 0.96862 1.00907 1.62129 1.07692 1.14046 1.43276 1.22188 0.93309 0.99186 0.91575 1.21983 0.94460 0.89795 0.99763 1.62222 1.09263 1.13935 1.41814 1.19343 0.82771 0.94591 0.95010 1.21428 0.91826 1.40727 1.02366 0.91859 1.25950 0.97012 0.95961 1.00806 1.70088 1.02549 1.48594 1.36329 0.85408 0.76887 0.79155 0.79003 1.19076 1.20811 1.19306 1.22163 0.95364 0.98231 0.91695 1.22082 0.93083 0.89136 1.01432 0.88874 0.88858 0.89050 0.89275 0.88613 0.89722 0.94758 0.94594 0.88415 0.96424 0.91277 1.02239 0.97853 0.92637 0.95922 0.91000 0.88264 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.48 10.32 70.18 0.72 0.24 16 2 C -0.20 -4.18 14.13 31.13 0.44 -3.74 16 3 C -0.21 -4.90 13.34 31.13 0.42 -4.48 16 4 C 0.00 0.01 5.64 28.79 0.16 0.17 16 5 C 0.07 1.59 4.91 86.30 0.42 2.01 16 6 N -0.55 -15.43 4.71 -895.71 -4.22 -19.65 16 7 C 0.07 2.01 5.41 86.31 0.47 2.48 16 8 C 0.07 2.75 5.43 86.31 0.47 3.22 16 9 N -0.55 -24.71 4.70 -900.28 -4.23 -28.94 16 10 C 0.21 11.55 4.72 85.56 0.40 11.96 16 11 C -0.53 -30.38 8.47 25.60 0.22 -30.16 16 12 H 0.06 3.57 7.13 -2.91 -0.02 3.55 16 13 C 0.00 0.04 5.46 84.66 0.46 0.50 16 14 N -0.94 -57.23 13.29 21.45 0.28 -56.94 16 15 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 C 0.05 2.03 5.61 86.31 0.48 2.51 16 20 C 0.07 2.07 5.61 86.31 0.48 2.55 16 21 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.09 1.83 6.49 -2.39 -0.02 1.81 16 25 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.08 1.77 8.03 -2.39 -0.02 1.76 16 27 H 0.03 0.80 8.12 -2.38 -0.02 0.78 16 28 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.10 2.52 6.34 -2.39 -0.02 2.51 16 30 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 2.97 6.79 -2.39 -0.02 2.96 16 32 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 33 H 0.00 0.20 8.03 -2.38 -0.02 0.18 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 2.65 8.07 -2.39 -0.02 2.63 16 37 H 0.10 2.37 8.07 -2.39 -0.02 2.35 16 38 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -67.09 311.24 0.02 -67.07 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.01 Total: 4.49 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 5.15 Total: -12.73 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -8.17 Total: -105.53 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.09 0.02 -67.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613175120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.776 kcal (2) G-P(sol) polarization free energy of solvation -67.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds