Wall clock time and date at job start Sun Mar 29 2020 22:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47340 * 2 1 4 4 C 1.36346 * 125.64029 * 89.96864 * 3 2 1 5 5 C 1.34844 * 108.21930 * 179.97438 * 4 3 2 6 6 C 1.40895 * 107.41841 * 359.97438 * 5 4 3 7 7 C 1.50706 * 126.29033 * 179.73472 * 6 5 4 8 8 N 1.46894 * 109.47207 * 90.02764 * 7 6 5 9 9 C 1.46904 * 110.99797 * 293.95598 * 8 7 6 10 10 C 1.46899 * 111.00135 * 169.99876 * 8 7 6 11 11 C 1.52995 * 109.47199 * 189.99769 * 10 8 7 12 12 C 1.50699 * 109.47328 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99836 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00202 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99850 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99966 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47339 * 90.00113 * 16 14 12 18 18 H 1.48500 * 109.47066 * 209.99852 * 16 14 12 19 19 H 1.48499 * 109.47150 * 329.99708 * 16 14 12 20 20 C 1.34848 * 107.41714 * 0.02562 * 6 5 4 21 21 H 1.09001 * 109.47283 * 300.00590 * 1 2 3 22 22 H 1.09000 * 109.46682 * 60.00560 * 1 2 3 23 23 H 1.08995 * 109.47110 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47525 * 239.99870 * 2 1 3 25 25 H 1.09004 * 109.47123 * 119.99598 * 2 1 3 26 26 H 1.07994 * 125.88498 * 359.96247 * 4 3 2 27 27 H 1.07998 * 126.29086 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.47030 * 210.02627 * 7 6 5 29 29 H 1.09007 * 109.46992 * 330.02437 * 7 6 5 30 30 H 1.09001 * 109.47252 * 59.99737 * 9 8 7 31 31 H 1.09007 * 109.46920 * 180.02562 * 9 8 7 32 32 H 1.09003 * 109.46873 * 299.99418 * 9 8 7 33 33 H 1.08994 * 109.46822 * 310.00130 * 10 8 7 34 34 H 1.09001 * 109.46901 * 70.00193 * 10 8 7 35 35 H 1.09005 * 109.47626 * 300.00688 * 11 10 8 36 36 H 1.09005 * 109.47309 * 60.00217 * 11 10 8 37 37 H 0.97006 * 119.99736 * 179.97438 * 15 14 12 38 38 H 1.08001 * 125.89182 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2827 2.1304 1.1081 5 6 2.7123 3.3432 0.7044 6 6 2.7139 3.3425 -0.7046 7 6 3.1149 4.4891 -1.5966 8 7 4.5527 4.4054 -1.8853 9 6 5.3472 4.6155 -0.6676 10 6 4.9355 5.3593 -2.9348 11 6 6.3705 5.0757 -3.3831 12 6 6.7630 6.0539 -4.4602 13 1 6.0593 6.8033 -4.7916 14 6 8.0203 5.9923 -5.0226 15 7 8.8773 5.0802 -4.6188 16 14 8.5069 7.2053 -6.3572 17 1 9.1157 8.4083 -5.7348 18 1 9.4903 6.5689 -7.2699 19 1 7.3015 7.6031 -7.1280 20 6 2.2847 2.1296 -1.1082 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.1675 1.8082 2.1324 27 1 3.0027 4.1638 1.3435 28 1 2.5534 4.4373 -2.5295 29 1 2.8993 5.4325 -1.0948 30 1 5.0934 3.8523 0.0680 31 1 6.4079 4.5487 -0.9099 32 1 5.1300 5.6019 -0.2578 33 1 4.2616 5.2537 -3.7850 34 1 4.8709 6.3747 -2.5439 35 1 7.0444 5.1812 -2.5328 36 1 6.4352 4.0603 -3.7740 37 1 9.7618 5.0366 -5.0148 38 1 2.1712 1.8067 -2.1325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616785366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:46 Heat of formation + Delta-G solvation = 25.972329 kcal Electronic energy + Delta-G solvation = -16271.977099 eV Core-core repulsion = 13728.338137 eV Total energy + Delta-G solvation = -2543.638962 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.02358 -38.53879 -35.43252 -34.74860 -32.10195 -30.32580 -29.83944 -27.85888 -26.86696 -24.64437 -23.45568 -21.57657 -20.94657 -20.25958 -18.56841 -17.81747 -16.53189 -16.41654 -16.13128 -15.47237 -15.43829 -14.93785 -14.50720 -14.25620 -14.16508 -13.97890 -13.44329 -13.12310 -13.01254 -12.93445 -12.82708 -12.70443 -12.49411 -12.34469 -12.05203 -11.99987 -11.76882 -11.31441 -11.22218 -10.52220 -9.37558 -9.05911 -8.88137 -8.17880 -6.29509 1.40985 1.43197 1.45469 1.54447 2.06380 2.19605 2.42724 3.14984 3.42762 3.88428 4.17779 4.21887 4.26620 4.36180 4.38692 4.46261 4.50216 4.58082 4.70562 4.74533 4.81836 4.89902 4.90793 4.98501 5.05367 5.14854 5.23847 5.35913 5.48591 5.61432 5.70644 5.81857 6.12191 6.17852 6.34713 6.40512 6.44674 6.65593 6.87824 7.39312 8.94385 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.050287 B = 0.004012 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.669856 B = 6976.737420 C = 7099.008637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.449 5.449 4 C -0.013 4.013 5 C -0.217 4.217 6 C -0.176 4.176 7 C 0.130 3.870 8 N -0.549 5.549 9 C 0.039 3.961 10 C 0.078 3.922 11 C 0.037 3.963 12 C -0.545 4.545 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.262 1.262 20 C -0.007 4.007 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.186 0.814 27 H 0.131 0.869 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.018 0.982 35 H -0.007 1.007 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.011 -9.243 11.258 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.125 5.125 4 C -0.143 4.143 5 C -0.241 4.241 6 C -0.183 4.183 7 C 0.002 3.998 8 N -0.273 5.273 9 C -0.110 4.110 10 C -0.049 4.049 11 C -0.001 4.001 12 C -0.583 4.583 13 H 0.079 0.921 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.186 1.186 20 C -0.139 4.139 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.124 0.876 26 H 0.203 0.797 27 H 0.149 0.851 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.011 0.989 36 H 0.009 0.991 37 H 0.072 0.928 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.892 -10.154 11.059 22.600 hybrid contribution 0.585 1.421 -0.403 1.589 sum -16.307 -8.733 10.656 21.348 Atomic orbital electron populations 1.22124 0.93673 1.03862 1.02359 1.22073 0.95962 0.79015 1.05463 1.44349 1.50251 1.12483 1.05399 1.22114 1.07554 0.92096 0.92568 1.20929 1.10246 0.98743 0.94224 1.19356 1.08687 0.96006 0.94216 1.20341 0.87434 0.94484 0.97534 1.62036 1.04579 1.51880 1.08822 1.22241 0.97502 0.99254 0.91973 1.21998 0.97720 0.91936 0.93288 1.18921 0.91373 0.95197 0.94576 1.21647 0.99289 1.16279 1.21104 0.92119 1.25998 0.96500 0.97692 0.99629 1.70125 1.06952 1.35889 1.44298 0.85397 0.78280 0.78540 0.78500 1.19766 1.20652 1.18608 1.21731 1.07784 0.92123 0.92214 0.92313 0.93047 0.88816 0.88741 0.87592 0.79674 0.85128 0.90771 0.94997 0.90502 0.93634 0.96088 0.91785 0.96382 0.98858 0.99111 0.92775 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 10.24 71.98 0.74 -0.99 16 2 C 0.10 1.24 6.81 86.38 0.59 1.83 16 3 N -0.45 -9.59 2.75 -524.48 -1.44 -11.03 16 4 C -0.01 -0.29 11.43 83.21 0.95 0.66 16 5 C -0.22 -5.83 9.50 22.14 0.21 -5.62 16 6 C -0.18 -5.31 4.97 -19.99 -0.10 -5.41 16 7 C 0.13 4.34 5.46 85.56 0.47 4.81 16 8 N -0.55 -22.23 4.75 -927.03 -4.41 -26.64 16 9 C 0.04 1.49 9.10 127.69 1.16 2.65 16 10 C 0.08 3.57 4.90 86.30 0.42 3.99 16 11 C 0.04 2.08 4.90 29.85 0.15 2.22 16 12 C -0.54 -32.30 9.11 25.60 0.23 -32.07 16 13 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 14 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 15 N -0.93 -58.61 13.29 21.45 0.28 -58.32 16 16 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 20 C -0.01 -0.19 11.35 83.21 0.94 0.75 16 21 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 28 H 0.07 2.37 7.93 -2.39 -0.02 2.35 16 29 H 0.03 1.04 8.12 -2.38 -0.02 1.03 16 30 H 0.08 2.70 6.33 -2.39 -0.02 2.69 16 31 H 0.04 1.97 6.30 -2.38 -0.02 1.96 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 2.83 7.93 -2.39 -0.02 2.81 16 34 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 35 H -0.01 -0.42 6.47 -2.38 -0.02 -0.43 16 36 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 37 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 38 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -70.29 313.29 3.69 -66.60 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.00 Total: 8.76 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 6.23 Total: -26.75 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -5.56 Total: -95.99 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.29 3.69 -66.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616785366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.577 kcal (2) G-P(sol) polarization free energy of solvation -70.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds