Wall clock time and date at job start Sun Mar 29 2020 22:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48502 * 109.46991 * 269.99573 * 3 2 1 5 5 H 1.48494 * 109.47334 * 30.00362 * 3 2 1 6 6 H 1.48506 * 109.46800 * 150.00039 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71992 * 12 9 7 14 14 C 1.52760 * 109.00861 * 233.58205 * 13 12 9 15 15 C 1.53046 * 109.38256 * 305.58983 * 14 13 12 16 16 F 1.39905 * 109.44805 * 181.25016 * 15 14 13 17 17 C 1.53042 * 109.53591 * 61.23964 * 15 14 13 18 18 C 1.46921 * 120.63289 * 89.99915 * 12 9 7 19 19 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.59343 * 353.42265 * 13 12 9 21 21 H 1.09010 * 109.58634 * 113.84364 * 13 12 9 22 22 H 1.09006 * 109.56563 * 185.55777 * 14 13 12 23 23 H 1.09001 * 109.35973 * 65.50306 * 14 13 12 24 24 H 1.08998 * 109.46354 * 301.21868 * 15 14 13 25 25 H 1.08998 * 109.49686 * 178.67995 * 17 15 14 26 26 H 1.09001 * 109.49965 * 58.58641 * 17 15 14 27 27 H 1.08997 * 109.58689 * 246.15965 * 18 12 9 28 28 H 1.08998 * 109.58450 * 6.44081 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 2.7522 -4.4890 -1.2648 14 6 2.5725 -6.0059 -1.2505 15 6 3.2394 -6.5846 -0.0004 16 9 3.1003 -7.9768 -0.0004 17 6 2.5730 -6.0057 1.2497 18 6 2.7568 -4.4849 1.2636 19 1 -0.4849 0.8400 -0.0004 20 1 2.1931 -4.0640 -2.0985 21 1 3.8104 -4.2502 -1.3724 22 1 3.0320 -6.4364 -2.1403 23 1 1.5088 -6.2437 -1.2385 24 1 4.2981 -6.3254 -0.0006 25 1 3.0327 -6.4359 2.1394 26 1 1.5093 -6.2434 1.2382 27 1 3.8153 -4.2457 1.3666 28 1 2.2024 -4.0553 2.0980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689808142.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:31 Heat of formation + Delta-G solvation = -152.595205 kcal Electronic energy + Delta-G solvation = -15712.242335 eV Core-core repulsion = 12803.458899 eV Total energy + Delta-G solvation = -2908.783436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.49849 -37.68614 -35.34817 -33.99682 -33.10868 -31.28201 -30.90470 -26.14410 -23.71832 -23.18802 -20.36802 -18.82049 -17.49904 -16.47049 -15.89848 -15.18192 -15.14492 -14.86154 -14.67535 -14.34212 -13.70366 -13.41487 -12.54321 -12.38049 -12.02717 -11.99779 -11.87784 -11.24936 -11.19884 -11.10632 -10.62744 -10.52637 -10.41802 -10.32655 -10.08411 -9.96639 -9.27188 -8.97003 -8.31445 -6.72238 -5.34833 2.20419 3.04914 3.11782 3.17958 4.02685 4.41937 4.61275 4.64514 4.72474 4.89346 5.07958 5.26226 5.53169 5.62971 5.75081 5.83462 5.85556 6.04776 6.11035 6.18034 6.20009 6.41075 6.41467 6.72628 7.29892 7.50993 7.94690 8.86495 10.21381 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.050033 B = 0.007812 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.490868 B = 3583.166420 C = 3631.945649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.003 7.003 11 O -1.003 7.003 12 N -1.014 6.014 13 C 0.126 3.874 14 C -0.158 4.158 15 C 0.093 3.907 16 F -0.221 7.221 17 C -0.158 4.158 18 C 0.126 3.874 19 H 0.291 0.709 20 H 0.100 0.900 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 -7.730 -0.014 10.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.816 3.184 10 O -0.993 6.993 11 O -0.993 6.993 12 N -0.849 5.849 13 C -0.001 4.001 14 C -0.198 4.198 15 C 0.057 3.943 16 F -0.201 7.201 17 C -0.197 4.197 18 C 0.000 4.000 19 H 0.101 0.899 20 H 0.119 0.881 21 H 0.080 0.920 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.590 -7.824 -0.011 10.230 hybrid contribution 1.007 1.092 -0.006 1.485 sum 7.597 -6.732 -0.017 10.151 Atomic orbital electron populations 1.69899 1.06785 1.30771 1.40077 1.24766 0.94473 1.00841 0.88495 0.86154 0.80150 0.80020 0.79176 1.19185 1.19970 1.18675 1.30613 1.06121 1.11795 1.66846 0.87962 1.00540 0.72108 0.72973 0.72818 1.93349 1.72702 1.87549 1.45708 1.93348 1.72676 1.87550 1.45741 1.58265 1.62740 1.54384 1.09557 1.21089 0.99879 0.91748 0.87349 1.22433 1.02607 0.97436 0.97292 1.21561 1.00917 0.74815 0.97040 1.92785 1.97492 1.32159 1.97704 1.22500 1.02589 0.97398 0.97260 1.21173 0.99824 0.91716 0.87334 0.89859 0.88143 0.91991 0.90140 0.90387 0.89946 0.90173 0.90370 0.91969 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.64 13.19 55.43 0.73 -23.91 15 2 C 0.13 3.64 5.46 -17.81 -0.10 3.55 15 3 Si 0.92 20.30 29.54 -169.99 -5.02 15.28 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.26 -5.58 7.11 56.52 0.40 -5.17 15 7 C -1.02 -27.60 9.75 30.60 0.30 -27.30 15 8 H 0.10 2.53 7.81 -52.49 -0.41 2.12 15 9 S 2.71 70.58 5.01 -107.50 -0.54 70.04 15 10 O -1.00 -28.60 16.61 -57.17 -0.95 -29.55 15 11 O -1.00 -28.60 16.60 -57.17 -0.95 -29.55 15 12 N -1.01 -19.79 3.30 -113.77 -0.37 -20.16 15 13 C 0.13 2.04 6.45 -3.93 -0.03 2.02 15 14 C -0.16 -2.21 5.80 -26.83 -0.16 -2.36 15 15 C 0.09 1.23 3.84 -26.69 -0.10 1.13 15 16 F -0.22 -3.17 17.08 2.25 0.04 -3.14 15 17 C -0.16 -2.21 5.82 -26.61 -0.15 -2.36 15 18 C 0.13 2.05 6.48 -3.71 -0.02 2.02 15 19 H 0.29 7.62 8.31 -40.82 -0.34 7.28 15 20 H 0.10 1.76 6.91 -51.93 -0.36 1.40 15 21 H 0.06 0.85 8.14 -51.92 -0.42 0.42 15 22 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.08 1.18 8.14 -51.93 -0.42 0.75 15 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.08 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 28 H 0.10 1.76 6.92 -51.93 -0.36 1.40 15 LS Contribution 253.18 15.07 3.82 3.82 Total: -1.00 -33.55 253.18 -6.73 -40.28 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -3.22 Total: 0.20 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -0.26 Total: -23.31 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.36 Total: -44.08 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -1.90 Total: -59.09 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 70.58 SS G_CDS: -0.54 Total: 70.04 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.55 -6.73 -40.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689808142.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.313 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds