Wall clock time and date at job start Sun Mar 29 2020 22:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48502 * 109.46991 * 269.99573 * 3 2 1 5 5 H 1.48494 * 109.47334 * 30.00362 * 3 2 1 6 6 H 1.48506 * 109.46800 * 150.00039 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71992 * 12 9 7 14 14 C 1.52760 * 109.00861 * 233.58205 * 13 12 9 15 15 C 1.53046 * 109.38256 * 305.58983 * 14 13 12 16 16 F 1.39905 * 109.44805 * 181.25016 * 15 14 13 17 17 C 1.53042 * 109.53591 * 61.23964 * 15 14 13 18 18 C 1.46921 * 120.63289 * 89.99915 * 12 9 7 19 19 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.59343 * 353.42265 * 13 12 9 21 21 H 1.09010 * 109.58634 * 113.84364 * 13 12 9 22 22 H 1.09006 * 109.56563 * 185.55777 * 14 13 12 23 23 H 1.09001 * 109.35973 * 65.50306 * 14 13 12 24 24 H 1.08998 * 109.46354 * 301.21868 * 15 14 13 25 25 H 1.08998 * 109.49686 * 178.67995 * 17 15 14 26 26 H 1.09001 * 109.49965 * 58.58641 * 17 15 14 27 27 H 1.08997 * 109.58689 * 246.15965 * 18 12 9 28 28 H 1.08998 * 109.58450 * 6.44081 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 2.7522 -4.4890 -1.2648 14 6 2.5725 -6.0059 -1.2505 15 6 3.2394 -6.5846 -0.0004 16 9 3.1003 -7.9768 -0.0004 17 6 2.5730 -6.0057 1.2497 18 6 2.7568 -4.4849 1.2636 19 1 -0.4849 0.8400 -0.0004 20 1 2.1931 -4.0640 -2.0985 21 1 3.8104 -4.2502 -1.3724 22 1 3.0320 -6.4364 -2.1403 23 1 1.5088 -6.2437 -1.2385 24 1 4.2981 -6.3254 -0.0006 25 1 3.0327 -6.4359 2.1394 26 1 1.5093 -6.2434 1.2382 27 1 3.8153 -4.2457 1.3666 28 1 2.2024 -4.0553 2.0980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689808142.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:30 Heat of formation + Delta-G solvation = -178.084575 kcal Electronic energy + Delta-G solvation = -15713.347637 eV Core-core repulsion = 12803.458899 eV Total energy + Delta-G solvation = -2909.888738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.57460 -38.98889 -37.47829 -36.13896 -35.17227 -32.60690 -32.12992 -28.24411 -25.01074 -24.41239 -21.62413 -20.76409 -19.15828 -18.40287 -17.22545 -16.87422 -16.72208 -16.07565 -16.00166 -15.86986 -15.28617 -15.16846 -13.99430 -13.85395 -13.61715 -13.45853 -13.16023 -13.11451 -13.00604 -12.53980 -12.46953 -12.29834 -12.13388 -12.07273 -11.35527 -11.30047 -11.24446 -10.95351 -9.85400 -8.74175 -7.48320 0.29140 1.34980 1.35272 1.51554 2.21007 2.58158 2.79842 3.53160 3.61772 3.69794 3.84010 4.02775 4.04918 4.31104 4.34824 4.42570 4.68481 4.78008 4.81410 4.91555 5.02866 5.06537 5.19913 5.29013 5.34691 5.91229 5.96800 6.78614 8.20917 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.050033 B = 0.007812 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.490868 B = 3583.166420 C = 3631.945649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.992 3.008 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.246 1.246 7 C -1.039 5.039 8 H 0.122 0.878 9 S 2.716 3.284 10 O -1.041 7.041 11 O -1.041 7.041 12 N -1.012 6.012 13 C 0.118 3.882 14 C -0.156 4.156 15 C 0.096 3.904 16 F -0.226 7.226 17 C -0.156 4.156 18 C 0.118 3.882 19 H 0.298 0.702 20 H 0.079 0.921 21 H 0.099 0.901 22 H 0.111 0.889 23 H 0.056 0.944 24 H 0.117 0.883 25 H 0.110 0.890 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.538 -7.813 -0.012 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.810 3.190 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.169 1.169 7 C -1.172 5.172 8 H 0.140 0.860 9 S 2.819 3.181 10 O -1.031 7.031 11 O -1.031 7.031 12 N -0.851 5.851 13 C -0.007 4.007 14 C -0.196 4.196 15 C 0.060 3.940 16 F -0.207 7.207 17 C -0.196 4.196 18 C -0.007 4.007 19 H 0.108 0.892 20 H 0.098 0.902 21 H 0.117 0.883 22 H 0.129 0.871 23 H 0.075 0.925 24 H 0.135 0.865 25 H 0.128 0.872 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.405 -7.933 -0.008 12.304 hybrid contribution 0.144 1.011 -0.008 1.021 sum 9.550 -6.922 -0.016 11.795 Atomic orbital electron populations 1.70002 1.08856 1.32313 1.41602 1.26057 0.95360 1.05486 0.87547 0.85107 0.79161 0.74714 0.80046 1.17869 1.18928 1.16905 1.30989 1.07229 1.12523 1.66479 0.86030 1.00051 0.72800 0.73834 0.71423 1.93288 1.74539 1.88345 1.46964 1.93287 1.74510 1.88347 1.46995 1.57755 1.62000 1.53197 1.12135 1.21378 1.01384 0.92990 0.84993 1.22426 1.01891 0.95836 0.99421 1.21623 1.02491 0.74248 0.95648 1.92779 1.97622 1.32620 1.97636 1.22492 1.01874 0.95793 0.99391 1.21462 1.01323 0.92961 0.84981 0.89166 0.90227 0.88291 0.87118 0.92538 0.86531 0.87165 0.92520 0.88281 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.41 13.19 21.45 0.28 -53.13 15 2 C 0.07 3.75 5.46 84.65 0.46 4.21 15 3 Si 0.99 40.61 29.54 68.60 2.03 42.64 15 4 H -0.25 -9.83 7.11 99.48 0.71 -9.13 15 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 15 7 C -1.04 -56.16 9.75 67.74 0.66 -55.50 15 8 H 0.12 5.85 7.81 -2.91 -0.02 5.83 15 9 S 2.72 144.63 5.01 -56.49 -0.28 144.35 15 10 O -1.04 -61.65 16.61 -128.00 -2.13 -63.77 15 11 O -1.04 -61.65 16.60 -128.00 -2.13 -63.77 15 12 N -1.01 -38.78 3.30 -513.86 -1.69 -40.47 15 13 C 0.12 3.62 6.45 86.22 0.56 4.17 15 14 C -0.16 -4.02 5.80 30.53 0.18 -3.84 15 15 C 0.10 2.21 3.84 30.62 0.12 2.33 15 16 F -0.23 -5.82 17.08 44.97 0.77 -5.05 15 17 C -0.16 -4.02 5.82 30.67 0.18 -3.84 15 18 C 0.12 3.63 6.48 86.36 0.56 4.18 15 19 H 0.30 15.97 8.31 -92.71 -0.77 15.20 15 20 H 0.08 2.78 6.91 -2.39 -0.02 2.77 15 21 H 0.10 2.33 8.14 -2.38 -0.02 2.31 15 22 H 0.11 2.19 8.14 -2.38 -0.02 2.17 15 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.12 1.99 8.14 -2.39 -0.02 1.98 15 25 H 0.11 2.19 8.14 -2.39 -0.02 2.17 15 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 15 27 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 28 H 0.08 2.79 6.92 -2.39 -0.02 2.77 15 Total: -1.00 -74.70 253.18 0.72 -73.98 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.16 Total: 13.51 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 2.71 Total: -48.29 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -1.41 Total: -93.60 kcal Atomic # 8 Polarization: -123.29 SS G_CDS: -4.25 Total: -127.54 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.77 Total: -5.05 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: 144.63 SS G_CDS: -0.28 Total: 144.35 kcal Total: -74.70 0.72 -73.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689808142.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.101 kcal (2) G-P(sol) polarization free energy of solvation -74.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds