Wall clock time and date at job start Sun Mar 29 2020 22:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00292 * 2 1 4 4 H 1.48498 * 109.47379 * 269.99798 * 3 2 1 5 5 H 1.48510 * 109.47139 * 29.99768 * 3 2 1 6 6 H 1.48501 * 109.47201 * 149.99386 * 3 2 1 7 7 C 1.37872 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00399 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00036 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40169 * 66.45805 * 9 7 2 11 11 O 1.42103 * 106.39935 * 293.53700 * 9 7 2 12 12 N 1.65596 * 107.21942 * 179.97438 * 9 7 2 13 13 C 1.46505 * 120.00270 * 64.99955 * 12 9 7 14 14 C 1.52998 * 109.47025 * 165.00183 * 13 12 9 15 15 C 1.53042 * 113.14878 * 185.00266 * 14 13 12 16 16 S 1.81425 * 89.93235 * 211.82965 * 15 14 13 17 17 C 1.53039 * 113.15312 * 84.62545 * 14 13 12 18 18 H 0.97011 * 119.99505 * 0.02562 * 1 2 3 19 19 H 0.97006 * 119.99759 * 244.99668 * 12 9 7 20 20 H 1.08999 * 109.46509 * 44.99789 * 13 12 9 21 21 H 1.08991 * 109.46620 * 285.00073 * 13 12 9 22 22 H 1.09002 * 112.52349 * 314.80815 * 14 13 12 23 23 H 1.09002 * 113.14805 * 327.10916 * 15 14 13 24 24 H 1.09003 * 113.15177 * 96.55360 * 15 14 13 25 25 H 1.08997 * 113.14758 * 263.40323 * 17 14 13 26 26 H 1.08997 * 113.15183 * 32.84975 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4509 -2.7950 1.2501 12 7 2.2482 -3.9354 0.0005 13 6 3.1393 -4.1089 1.1504 14 6 3.8046 -5.4847 1.0770 15 6 4.6625 -5.8043 2.3033 16 16 5.7811 -6.7831 1.2630 17 6 5.0586 -5.5006 0.1999 18 1 -0.4850 0.8402 -0.0004 19 1 2.3170 -4.5325 -0.7608 20 1 2.5621 -4.0330 2.0719 21 1 3.9053 -3.3337 1.1365 22 1 3.0984 -6.2773 0.8296 23 1 5.1388 -4.9238 2.7344 24 1 4.1383 -6.4020 3.0491 25 1 4.8664 -5.8444 -0.8164 26 1 5.6110 -4.5613 0.2249 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697952657.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:35 Heat of formation + Delta-G solvation = -79.287111 kcal Electronic energy + Delta-G solvation = -13162.263819 eV Core-core repulsion = 10687.039342 eV Total energy + Delta-G solvation = -2475.224477 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.028 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.60768 -35.21464 -33.97339 -33.29446 -32.93973 -26.39343 -26.15530 -25.62928 -20.75739 -18.95480 -17.43807 -16.81054 -16.09570 -15.95996 -15.00764 -14.65023 -14.16348 -13.71300 -13.26056 -13.12991 -13.02109 -12.20145 -11.97191 -11.54060 -11.27533 -11.23512 -10.91071 -10.64250 -10.60444 -10.31251 -10.21601 -9.88923 -9.26932 -9.06688 -8.54309 -7.89000 -6.72344 -5.34592 1.70378 1.84908 2.31518 3.05106 3.12302 3.17798 4.02791 4.22276 4.60597 4.65316 4.71435 4.99800 5.23614 5.26106 5.35119 5.52353 5.70686 5.75225 6.02114 6.17807 6.45592 6.77635 7.29725 7.84765 7.94513 8.86875 10.21844 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.037852 B = 0.006978 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.541055 B = 4011.629815 C = 4413.236437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.021 5.021 8 H 0.102 0.898 9 S 2.716 3.284 10 O -1.006 7.006 11 O -1.007 7.007 12 N -1.137 6.137 13 C 0.139 3.861 14 C -0.099 4.099 15 C -0.073 4.073 16 S -0.316 6.316 17 C -0.073 4.073 18 H 0.291 0.709 19 H 0.402 0.598 20 H 0.084 0.916 21 H 0.066 0.934 22 H 0.116 0.884 23 H 0.109 0.891 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.018 -7.090 2.392 11.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.155 5.155 8 H 0.120 0.880 9 S 2.815 3.185 10 O -0.997 6.997 11 O -0.997 6.997 12 N -0.891 5.891 13 C 0.009 3.991 14 C -0.120 4.120 15 C -0.222 4.222 16 S -0.090 6.090 17 C -0.222 4.222 18 H 0.101 0.899 19 H 0.233 0.767 20 H 0.102 0.898 21 H 0.084 0.916 22 H 0.134 0.866 23 H 0.127 0.873 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.825 -8.176 2.589 12.306 hybrid contribution 0.470 1.810 -0.364 1.905 sum 9.295 -6.366 2.225 11.484 Atomic orbital electron populations 1.69898 1.06787 1.30742 1.40013 1.24741 0.94455 1.00829 0.88511 0.86168 0.80133 0.80114 0.79151 1.19240 1.19998 1.18688 1.30545 1.06053 1.11900 1.66954 0.87996 1.00395 0.72057 0.73218 0.72817 1.93379 1.73076 1.87621 1.45594 1.93359 1.72793 1.87509 1.45999 1.55970 1.55653 1.51247 1.26253 1.21061 0.93584 0.94201 0.90242 1.22803 0.96184 1.00202 0.92842 1.24328 0.96541 1.00805 1.00496 1.88945 1.64543 1.41532 1.13995 1.24511 0.96855 0.98440 1.02362 0.89872 0.76704 0.89800 0.91572 0.86584 0.87259 0.88225 0.88382 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.39 13.19 55.43 0.73 -23.66 15 2 C 0.13 3.61 5.46 -17.82 -0.10 3.51 15 3 Si 0.92 20.05 29.54 -169.99 -5.02 15.03 15 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 15 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 7 C -1.02 -26.99 9.72 30.60 0.30 -26.69 15 8 H 0.10 2.43 7.81 -52.48 -0.41 2.02 15 9 S 2.72 68.64 5.02 -107.50 -0.54 68.10 15 10 O -1.01 -28.60 18.02 -57.17 -1.03 -29.63 15 11 O -1.01 -28.26 17.49 -57.17 -1.00 -29.26 15 12 N -1.14 -20.39 6.00 -10.61 -0.06 -20.46 15 13 C 0.14 2.04 6.00 -4.04 -0.02 2.01 15 14 C -0.10 -1.13 3.45 -90.58 -0.31 -1.44 15 15 C -0.07 -0.74 7.49 37.18 0.28 -0.47 15 16 S -0.32 -3.80 24.80 -107.50 -2.67 -6.47 15 17 C -0.07 -0.79 7.49 37.18 0.28 -0.51 15 18 H 0.29 7.55 8.31 -40.82 -0.34 7.21 15 19 H 0.40 6.17 8.65 -34.47 -0.30 5.87 15 20 H 0.08 1.29 7.75 -51.93 -0.40 0.89 15 21 H 0.07 0.91 7.89 -51.93 -0.41 0.50 15 22 H 0.12 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.11 1.00 8.12 -51.93 -0.42 0.58 15 24 H 0.10 0.92 8.14 -51.93 -0.42 0.49 15 25 H 0.10 0.99 8.14 -51.93 -0.42 0.56 15 26 H 0.11 1.11 7.94 -51.93 -0.41 0.69 15 LS Contribution 255.90 15.07 3.86 3.86 Total: -1.00 -34.04 255.90 -8.07 -42.11 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -2.76 Total: 3.96 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 0.42 Total: -23.58 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.67 Total: -44.11 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -2.03 Total: -58.89 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 64.84 SS G_CDS: -3.21 Total: 61.63 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.04 -8.07 -42.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697952657.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.175 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds